View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_122 (Length: 322)
Name: NF1137_low_122
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_122 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 29 - 310
Target Start/End: Complemental strand, 19901542 - 19901261
Alignment:
| Q |
29 |
aacaaacgtattccttattaagtaannnnnnngacggaaaatatttattttgttcttacttccttctcgtttgcaccgagctttctctttcatttcttca |
128 |
Q |
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| T |
19901542 |
aacaaacgtattccttattaagtaatttttttgacggaaaatatttattttgttcttacttccttctcgtttgcaccgagctttctctttcatttcttca |
19901443 |
T |
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| Q |
129 |
tcatgttctccgtcatcaaagggaacaacctcaatgtaaggatattccataaatgcttccaaaagcttaccaccatatatatgcttctccttaaccttct |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19901442 |
tcatgttctccgtcatcaaagggaacaacctcaatgtaaggatgtttcataaatgcttccaaaagcttaccaccatatatatgcttctccttaaccttct |
19901343 |
T |
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| Q |
229 |
ttattgccgttaagcatgcaaaattaattaagcctgtgcacacagcaaaaaatagtaatggtgacttataataaaggatatt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19901342 |
ttattgccgttaagcatgcaaaattaattaagcctgtgcacacagcaaaaaatagtaatggtgacttataataaaggatatt |
19901261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 20082536 - 20082578
Alignment:
| Q |
110 |
tttctctttcatttcttcatcatgttctccgtcatcaaaggga |
152 |
Q |
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| T |
20082536 |
tttctcttttatttcttcatcatgtgctccgtaatcaaaggga |
20082578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 20110711 - 20110756
Alignment:
| Q |
107 |
agctttctctttcatttcttcatcatgttctccgtcatcaaaggga |
152 |
Q |
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| T |
20110711 |
agctttctcttttatttcttcgtcatgttctccataatcaaaggga |
20110756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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