View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_123 (Length: 322)

Name: NF1137_low_123
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_123
NF1137_low_123
[»] chr7 (6 HSPs)
chr7 (219-313)||(33140939-33141033)
chr7 (145-228)||(33141056-33141139)
chr7 (31-106)||(33141142-33141217)
chr7 (222-310)||(18740832-18740920)
chr7 (266-311)||(11596404-11596449)
chr7 (266-311)||(45054916-45054961)
[»] chr1 (2 HSPs)
chr1 (222-310)||(24575379-24575467)
chr1 (266-311)||(43090004-43090049)
[»] chr3 (2 HSPs)
chr3 (212-271)||(44572903-44572962)
chr3 (266-315)||(20661798-20661847)
[»] chr2 (4 HSPs)
chr2 (249-308)||(19591137-19591196)
chr2 (197-310)||(1093936-1094049)
chr2 (266-311)||(2647572-2647617)
chr2 (259-311)||(18667239-18667291)
[»] chr8 (1 HSPs)
chr8 (266-311)||(43967005-43967050)
[»] chr5 (3 HSPs)
chr5 (266-311)||(4983937-4983982)
chr5 (266-311)||(41782817-41782862)
chr5 (267-311)||(11136635-11136679)
[»] chr6 (1 HSPs)
chr6 (258-310)||(3082304-3082356)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 33141033 - 33140939
Alignment:
Q  219 aattcgacttgagtttgaaacgaatatttattttagcatgagtttgactcgtttacagctcacgagcaactcagttcggctcattaggttcatct 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||    
T  33141033 aattcgacttgagtttgaaacgaatatttattttagcatgagtttgactcatttacagctcacgagcaactcggtttggctcattaggttcatct 33140939  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 33141139 - 33141056
Alignment:
Q  145 tttgaaaatgtaacggtgtttaatctcttgagagtatggtttggaaataagccgagtcgaatttgtttgagctcaattcgactt 228  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  33141139 tttgaaaatgtaacggtgtttaatctcttgagagtagggtttgaaaataagccgagtcgaatttgtttgagctcaattcgactt 33141056  T

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Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 33141217 - 33141142
Alignment:
Q  31 atcaatgcaattaattaatgaatccaaagtaacgtatcaattttaaattcaagagtatttgaatgaaatggtaaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33141217 atcaatgcaattaattaatgaatccaaagtaacgtatcaattttaaattcaagagtatttgaatgaaatggtaaaa 33141142  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 18740920 - 18740832
Alignment:
Q  222 tcgacttgagtttgaaacgaatatttattttagcatgagtttgactcgtttacagctcacgagcaactcagttcggctcattaggttca 310  Q
    |||||| ||||||||||| ||| ||| ||| | |  ||||| |||||||||| || |||||| |||||| ||||||||| |||||||||    
T  18740920 tcgactcgagtttgaaacaaatctttttttaaactcgagttcgactcgtttaaagttcacgaacaactcggttcggctcgttaggttca 18740832  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 11596449 - 11596404
Alignment:
Q  266 ctcgtttacagctcacgagcaactcagttcggctcattaggttcat 311  Q
    |||||||| || ||||||||||||| ||||||||| ||||||||||    
T  11596449 ctcgtttaaagttcacgagcaactcggttcggctcgttaggttcat 11596404  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 45054916 - 45054961
Alignment:
Q  266 ctcgtttacagctcacgagcaactcagttcggctcattaggttcat 311  Q
    |||||||| || ||||||||||||| ||||||||| ||||||||||    
T  45054916 ctcgtttaaagttcacgagcaactcggttcggctcgttaggttcat 45054961  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 24575379 - 24575467
Alignment:
Q  222 tcgacttgagtttgaaacgaatatttattttagcatgagtttgactcgtttacagctcacgagcaactcagttcggctcattaggttca 310  Q
    |||||| ||||||||||||||  ||| ||||| |  ||||| | |||||||| || |||||| |||||| ||||||||| |||||||||    
T  24575379 tcgactcgagtttgaaacgaactttttttttaactcgagttcggctcgtttaaagttcacgaacaactcggttcggctcgttaggttca 24575467  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 43090049 - 43090004
Alignment:
Q  266 ctcgtttacagctcacgagcaactcagttcggctcattaggttcat 311  Q
    |||||||| || ||||||||||||| ||||||||| ||||||||||    
T  43090049 ctcgtttaaagttcacgagcaactcggttcggctcgttaggttcat 43090004  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 44572903 - 44572962
Alignment:
Q  212 tgagctcaattcgacttgagtttgaaacgaatatttattttagcatgagtttgactcgtt 271  Q
    ||||||| | ||||||||||||||| |||||| ||| ||||||| |||||||| ||||||    
T  44572903 tgagctcgactcgacttgagtttgatacgaatcttttttttagcttgagtttggctcgtt 44572962  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 20661798 - 20661847
Alignment:
Q  266 ctcgtttacagctcacgagcaactcagttcggctcattaggttcatctca 315  Q
    |||||||| || |||||| |||||| ||||||||| ||||||||||||||    
T  20661798 ctcgtttaaagttcacgaacaactcggttcggctcgttaggttcatctca 20661847  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 19591196 - 19591137
Alignment:
Q  249 ttttagcatgagtttgactcgtttacagctcacgagcaactcagttcggctcattaggtt 308  Q
    |||||||  ||||||||||| |||| || |||||||||||||||||| |||| |||||||    
T  19591196 ttttagctcgagtttgactcatttaaagttcacgagcaactcagttcagctcgttaggtt 19591137  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 310
Target Start/End: Original strand, 1093936 - 1094049
Alignment:
Q  197 cgagtcgaatttgtttgagctcaattcgacttgagtttgaaacgaatatttattttagcatgagtttgactcgtttacagctcacgagcaactcagttcg 296  Q
    |||||||||  ||| |||| || | |||||| ||||||||||||||  ||| ||||| | |||||| | |||||||| || || ||| | |||| |||||    
T  1093936 cgagtcgaacctgtctgagttcgactcgactcgagtttgaaacgaaccttttttttaacttgagttcggctcgtttaaagttcgcgaactactcggttcg 1094035  T
Q  297 gctcattaggttca 310  Q
    |||| |||||||||    
T  1094036 gctcgttaggttca 1094049  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 2647617 - 2647572
Alignment:
Q  266 ctcgtttacagctcacgagcaactcagttcggctcattaggttcat 311  Q
    |||||||| || ||||||||||||| ||||||||| ||||||||||    
T  2647617 ctcgtttaaagttcacgagcaactcggttcggctcgttaggttcat 2647572  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 18667239 - 18667291
Alignment:
Q  259 agtttgactcgtttacagctcacgagcaactcagttcggctcattaggttcat 311  Q
    |||||| |||||||| || | ||||| ||||| ||||||||||||||||||||    
T  18667239 agtttggctcgtttaaagtttacgagtaactcggttcggctcattaggttcat 18667291  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 43967005 - 43967050
Alignment:
Q  266 ctcgtttacagctcacgagcaactcagttcggctcattaggttcat 311  Q
    |||||||| || ||||||||||||| ||||||||| ||||||||||    
T  43967005 ctcgtttaaagttcacgagcaactcggttcggctcgttaggttcat 43967050  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 4983982 - 4983937
Alignment:
Q  266 ctcgtttacagctcacgagcaactcagttcggctcattaggttcat 311  Q
    |||||||| || ||||||||||||| ||||||||| ||||||||||    
T  4983982 ctcgtttaaagttcacgagcaactcggttcggctcgttaggttcat 4983937  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 41782817 - 41782862
Alignment:
Q  266 ctcgtttacagctcacgagcaactcagttcggctcattaggttcat 311  Q
    |||||||| || ||||||||||||| ||||||||| ||||||||||    
T  41782817 ctcgtttaaagttcacgagcaactcggttcggctcgttaggttcat 41782862  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 11136679 - 11136635
Alignment:
Q  267 tcgtttacagctcacgagcaactcagttcggctcattaggttcat 311  Q
    ||||||| || ||||||||||||| ||||||||| ||||||||||    
T  11136679 tcgtttaaagttcacgagcaactcggttcggctcgttaggttcat 11136635  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 3082356 - 3082304
Alignment:
Q  258 gagtttgactcgtttacagctcacgagcaactcagttcggctcattaggttca 310  Q
    ||||| |||||||||  || ||||||||||||||||||| ||| |||||||||    
T  3082356 gagttcgactcgttttaagttcacgagcaactcagttcgactcgttaggttca 3082304  T

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