View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1137_low_124 (Length: 320)
Name: NF1137_low_124
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_124 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 311
Target Start/End: Original strand, 2592333 - 2592614
Alignment:
| Q |
30 |
gatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaacagctagggctatattaaagaatccagatgtgttgcttt |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| |
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| T |
2592333 |
gatacactgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttt |
2592432 |
T |
|
| Q |
130 |
tggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttagaaaaggtcatggttggaagaacaagcgtggttgtagcaca |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
2592433 |
tggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcaca |
2592532 |
T |
|
| Q |
230 |
taggttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatct |
311 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592533 |
taggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatct |
2592614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 30 - 311
Target Start/End: Original strand, 2440387 - 2440668
Alignment:
| Q |
30 |
gatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaacagctagggctatattaaagaatccagatgtgttgcttt |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| |
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|
| T |
2440387 |
gatacactgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttt |
2440486 |
T |
|
| Q |
130 |
tggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttagaaaaggtcatggttggaagaacaagcgtggttgtagcaca |
229 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
2440487 |
tggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcaca |
2440586 |
T |
|
| Q |
230 |
taggttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatct |
311 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
2440587 |
taggttgagtactattcaaaactgtgatttgattgctgttttggataagggaattgttgttgagaaaggaacacattcatct |
2440668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 33 - 310
Target Start/End: Original strand, 2623880 - 2624157
Alignment:
| Q |
33 |
acattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaacagctagggctatattaaagaatccagatgtgttgcttttgg |
132 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
2623880 |
acattgtgtggtgacagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattaaagaatccagatgtgttgcttttgg |
2623979 |
T |
|
| Q |
133 |
atgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttagaaaaggtcatggttggaagaacaagcgtggttgtagcacatag |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2623980 |
atgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacatag |
2624079 |
T |
|
| Q |
233 |
gttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatc |
310 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
2624080 |
gttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaatggaacacattcatc |
2624157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 308
Target Start/End: Complemental strand, 2568937 - 2568659
Alignment:
| Q |
30 |
gatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaacagctagggctatattaaagaatccagatgtgttgcttt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| |
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|
| T |
2568937 |
gatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttt |
2568838 |
T |
|
| Q |
130 |
tggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttagaaaaggtcatggttggaagaacaagcgtggttgtagcaca |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||||| ||||| |
|
|
| T |
2568837 |
tggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtggcaca |
2568738 |
T |
|
| Q |
230 |
taggttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattca |
308 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |
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|
| T |
2568737 |
taggttgagtactatacaaaattgtgatttgattgctgttttggataagggcattgttgttgagaaaggaacacattca |
2568659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 307
Target Start/End: Complemental strand, 2596496 - 2596219
Alignment:
| Q |
30 |
gatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaacagctagggctatattaaagaatccagatgtgttgcttt |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| |
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|
| T |
2596496 |
gatacactgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttt |
2596397 |
T |
|
| Q |
130 |
tggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttagaaaaggtcatggttggaagaacaagcgtggttgtagcaca |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||||| |||||||| ||||| |
|
|
| T |
2596396 |
tggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatactttagaaagggttatggttggaaggacaagtgtggttgtggcaca |
2596297 |
T |
|
| Q |
230 |
taggttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattc |
307 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
2596296 |
taggttgagtactatacaaaattgtgatttgattgctgtcttggataagggaattgttgttgagaaaggaacacattc |
2596219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 311
Target Start/End: Complemental strand, 2672312 - 2672031
Alignment:
| Q |
30 |
gatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaacagctagggctatattaaagaatccagatgtgttgcttt |
129 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
2672312 |
gatactttgtgtggtgacagaggagttcaacttagtggtggtcaaaaacaaagaattgcaatagctagagctatattgaagaatccagaggtgttgcttt |
2672213 |
T |
|
| Q |
130 |
tggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttagaaaaggtcatggttggaagaacaagcgtggttgtagcaca |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
2672212 |
tggatgaagcaacaagtgcacttgatagtcaatctgagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtagcaca |
2672113 |
T |
|
| Q |
230 |
taggttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatct |
311 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| || |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2672112 |
taggttgagtactatacaaaattgcgatttgattgctgttttagacaagggaagtgttgttgagaaaggaacacattcatct |
2672031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 311
Target Start/End: Complemental strand, 2641152 - 2640871
Alignment:
| Q |
30 |
gatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaacagctagggctatattaaagaatccagatgtgttgcttt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| ||||||||| | ||||| |||| |
|
|
| T |
2641152 |
gatacattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaaggattgcaatagctagagctatattgaagaatccaaaggtgttacttt |
2641053 |
T |
|
| Q |
130 |
tggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttagaaaaggtcatggttggaagaacaagcgtggttgtagcaca |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||| ||||| || ||||| ||||| |
|
|
| T |
2641052 |
tggatgaagcaacaagtgcacttgatagtcaatcagagaaattagtgcaagatgctttagaaagagttatggttggaaggacaagtgtagttgtcgcaca |
2640953 |
T |
|
| Q |
230 |
taggttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatct |
311 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||| |||||||||||||||||| |
|
|
| T |
2640952 |
taggttgagtactatacaaaattgtgatttgattgctgttttggataaggggattgttgttgaaaaaggaacacattcatct |
2640871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 33 - 311
Target Start/End: Original strand, 2451112 - 2451390
Alignment:
| Q |
33 |
acattgtgtggtgatagaggagttcaacttagtggtggtcaaaaacaaagaattgcaacagctagggctatattaaagaatccagatgtgttgcttttgg |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||| |||||||| ||||||||| | ||||||||||||| |
|
|
| T |
2451112 |
acattgtgtggtgatagaggagttcaactttctggtggtcaaaagcaaaggattgcaatagctagagctatattgaagaatccaaaggtgttgcttttgg |
2451211 |
T |
|
| Q |
133 |
atgaagcaacaagtgcacttgatagtcaatcagagaaattagtccaagatgctttagaaaaggtcatggttggaagaacaagcgtggttgtagcacatag |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| ||| ||||||||||||| |||||||| || ||||| |
|
|
| T |
2451212 |
atgaagcaacaagtgcacttgatagtcaatcagagaagttagtgcaagatgctttagaaagggttatgattggaagaacaagtgtggttgtggctcatag |
2451311 |
T |
|
| Q |
233 |
gttgagtactatacaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatct |
311 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2451312 |
gttgagtactatacaaaattgtgatatgattgttgttttggataagggtagtgttattgagaaaggaacacattcatct |
2451390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 271
Target Start/End: Complemental strand, 17870306 - 17870107
Alignment:
| Q |
72 |
caaaaacaaagaattgcaacagctagggctatattaaagaatccagatgtgttgcttttggatgaagcaacaagtgcacttgatagtcaatcagagaaat |
171 |
Q |
| |
|
||||||||||| || |||| |||||| || || || ||||||||| | ||||||||| | ||||||||||||||||||||||||| | | ||||| || |
|
|
| T |
17870306 |
caaaaacaaaggatagcaatagctagagccatgttgaagaatccaaaggtgttgcttctagatgaagcaacaagtgcacttgataataattcagaaaagg |
17870207 |
T |
|
| Q |
172 |
tagtccaagatgctttagaaaaggtcatggttggaagaacaagcgtggttgtagcacataggttgagtactatacaaaactgtgatttgattgctgtttt |
271 |
Q |
| |
|
|||| |||||||| || | ||||| ||||||||||| || || |||||||||||||||||||||||||| ||||| || |||||| | ||||||||||| |
|
|
| T |
17870206 |
tagtgcaagatgcattgaataaggtaatggttggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgtttt |
17870107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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