View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_127 (Length: 319)
Name: NF1137_low_127
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_127 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 98 - 319
Target Start/End: Complemental strand, 32917404 - 32917185
Alignment:
| Q |
98 |
acaaattcctttcacttatctctaaggaacaaaacaaactttgacaaattcctttccctctttttctaccactttcttgaacattcatctttgtgaattc |
197 |
Q |
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| T |
32917404 |
acaaattcctttcacttatctccaaggaacaaaacaaactttgacaaattcctttccctctttttctaccactttcttgaacattc---tttgtcaattc |
32917308 |
T |
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| Q |
198 |
ctaaaatagccaaactattttgaatcaaa-caccacctataaaaaggatattagtctcaaactcagtgcaagaaaccactgaaattccgaggcacaaaac |
296 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32917307 |
ctaaaatagccaaactattttgaatcaaaacaccacctataaaaaggatattggtctcaaactcagtgcaagaaaccactgaaattccgaggcacaaaac |
32917208 |
T |
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| Q |
297 |
ttctaggaaaagatggcaaaagc |
319 |
Q |
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||||||||||||||||||||||| |
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| T |
32917207 |
ttctaggaaaagatggcaaaagc |
32917185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 21925271 - 21925312
Alignment:
| Q |
265 |
caagaaaccactgaaattccgaggcacaaaacttctaggaaa |
306 |
Q |
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||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
21925271 |
caagaaatcactgaaattccgaggcacaaaactcctgggaaa |
21925312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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