View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1137_low_132 (Length: 315)
Name: NF1137_low_132
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_132 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 10569192 - 10569479
Alignment:
| Q |
13 |
aatatcaaacacactcaagcaagaaaaaatgtataacttgaaagaatagataatgttaaatgaccttaaaggtagaccttcctatatagaaaagtaacag |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10569192 |
aatatcaaacacactcaagcaagaaaagatgtataacttgaaagaatagataatgttaaatgaccttaaaggtagaccttcctatatagaaaagtaacag |
10569291 |
T |
|
| Q |
113 |
tagcatcaatctcagtttaaaacaaaaaattacaaaataattccttaataaattcccaataactcatactttcataagcttatagtatcgaaatccttat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10569292 |
tagcatcaatctcagtttaaaacaaaaaattacaaaataattccttaataaattcccaataactcatactttcataagcttatagtatcgaaatcctttt |
10569391 |
T |
|
| Q |
213 |
aaataaaactatgatgatggtaacacttnnnnnnngctaaatctttaaaataacaatcatcttctttcaacaagtagcgatggttgat |
300 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10569392 |
aaataaacctatgatgatggtaacacttaaaaaaagctaaatctttaaaataacaatcatcttctttcaacaagtagcgatggttgat |
10569479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 124 - 300
Target Start/End: Original strand, 10551768 - 10551948
Alignment:
| Q |
124 |
tcagtttaaaacaaaaaa-ttacaaaataattccttaataaattcccaataactcatactttcataagcttatagtatcgaaatccttataaataaaact |
222 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
10551768 |
tcagtttaaaacaaaaaaattacaaaataattccttaataa-ttcccaatacctcatactttcataagctaatagtatcgaaatccttaaaaataaaaca |
10551866 |
T |
|
| Q |
223 |
atgatgatggtaacacttnnnnnnngc----taaatctttaaaataacaatcatcttctttcaacaagtagcgatggttgat |
300 |
Q |
| |
|
|||||||||||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10551867 |
atgatgatggtaacacttaaaaaaagcaaaatatatatttaaaataacaatcatcttctttcaacaagtagcgatggttgat |
10551948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University