View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_14 (Length: 678)

Name: NF1137_low_14
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_14
NF1137_low_14
[»] chr7 (25 HSPs)
chr7 (449-678)||(23618339-23618570)
chr7 (454-678)||(25842641-25842867)
chr7 (454-678)||(8254016-8254245)
chr7 (556-678)||(1981233-1981357)
chr7 (556-678)||(8629638-8629760)
chr7 (556-675)||(8304179-8304302)
chr7 (449-557)||(1981563-1981671)
chr7 (602-678)||(7307154-7307229)
chr7 (454-557)||(8303599-8303703)
chr7 (556-678)||(26565445-26565568)
chr7 (280-360)||(8254359-8254439)
chr7 (603-678)||(17809024-17809100)
chr7 (281-360)||(25842981-25843061)
chr7 (609-675)||(30294408-30294475)
chr7 (608-678)||(4574878-4574949)
chr7 (297-359)||(8303433-8303495)
chr7 (556-654)||(21157605-21157703)
chr7 (592-676)||(5058673-5058759)
chr7 (281-360)||(23618669-23618749)
chr7 (611-676)||(7730258-7730324)
chr7 (611-676)||(17811512-17811578)
chr7 (611-675)||(4247521-4247585)
chr7 (277-358)||(26281361-26281442)
chr7 (631-678)||(26340282-26340330)
chr7 (592-676)||(44944744-44944830)
[»] chr1 (18 HSPs)
chr1 (449-675)||(17197441-17197669)
chr1 (560-678)||(12002769-12002890)
chr1 (276-360)||(4527-4611)
chr1 (281-360)||(17197747-17197825)
chr1 (449-557)||(12003014-12003122)
chr1 (623-675)||(8773432-8773484)
chr1 (611-674)||(16434674-16434739)
chr1 (556-624)||(8773067-8773138)
chr1 (556-646)||(24117603-24117694)
chr1 (556-678)||(18891491-18891615)
chr1 (556-676)||(17055818-17055938)
chr1 (556-600)||(22789307-22789352)
chr1 (455-550)||(8772859-8772956)
chr1 (296-360)||(8772719-8772783)
chr1 (603-654)||(16446679-16446731)
chr1 (624-678)||(22789348-22789402)
chr1 (310-360)||(27502252-27502302)
chr1 (592-676)||(42179963-42180050)
[»] chr2 (32 HSPs)
chr2 (454-678)||(34577884-34578108)
chr2 (454-678)||(20034132-20034357)
chr2 (454-678)||(27524006-27524232)
chr2 (499-674)||(7301825-7302002)
chr2 (556-678)||(974432-974557)
chr2 (556-678)||(41002120-41002244)
chr2 (556-678)||(21869231-21869356)
chr2 (449-553)||(21869672-21869777)
chr2 (556-675)||(27406899-27407020)
chr2 (557-678)||(26251621-26251748)
chr2 (611-678)||(13502570-13502638)
chr2 (280-359)||(20034452-20034531)
chr2 (282-360)||(34577702-34577780)
chr2 (572-678)||(34841705-34841813)
chr2 (560-676)||(24473931-24474051)
chr2 (449-553)||(41001916-41002021)
chr2 (556-676)||(25539044-25539166)
chr2 (556-674)||(19245691-19245812)
chr2 (280-360)||(974190-974270)
chr2 (603-678)||(19519530-19519606)
chr2 (280-360)||(27524336-27524416)
chr2 (572-678)||(16766910-16767017)
chr2 (611-675)||(31023466-31023531)
chr2 (556-624)||(27749713-27749784)
chr2 (556-678)||(19492040-19492165)
chr2 (301-360)||(41001770-41001829)
chr2 (556-667)||(5395430-5395544)
chr2 (631-678)||(27749419-27749466)
chr2 (602-678)||(1690625-1690701)
chr2 (610-678)||(8428385-8428454)
chr2 (592-675)||(35565857-35565939)
chr2 (320-360)||(21869875-21869915)
[»] chr3 (34 HSPs)
chr3 (449-678)||(22970796-22971028)
chr3 (449-678)||(18013981-18014210)
chr3 (449-678)||(19348542-19348772)
chr3 (565-678)||(8592309-8592425)
chr3 (567-677)||(9169780-9169891)
chr3 (456-557)||(8566456-8566558)
chr3 (449-562)||(3041267-3041380)
chr3 (449-557)||(21554111-21554220)
chr3 (603-678)||(21553802-21553881)
chr3 (603-675)||(10591789-10591861)
chr3 (611-678)||(3041375-3041442)
chr3 (556-621)||(8566180-8566247)
chr3 (278-360)||(18013811-18013893)
chr3 (452-551)||(20767317-20767418)
chr3 (607-678)||(8560367-8560437)
chr3 (278-360)||(19348371-19348453)
chr3 (556-678)||(27676545-27676668)
chr3 (609-675)||(6861039-6861106)
chr3 (281-360)||(21554309-21554389)
chr3 (278-360)||(3041091-3041169)
chr3 (609-654)||(15806305-15806350)
chr3 (616-678)||(6136466-6136529)
chr3 (605-667)||(23649385-23649448)
chr3 (314-360)||(22970651-22970697)
chr3 (611-676)||(25870221-25870286)
chr3 (592-676)||(28745920-28746006)
chr3 (613-676)||(39428069-39428133)
chr3 (602-676)||(8156028-8156103)
chr3 (616-678)||(13286113-13286176)
chr3 (643-678)||(27090633-27090668)
chr3 (609-648)||(28135924-28135963)
chr3 (592-675)||(42696991-42697077)
chr3 (611-676)||(20756187-20756252)
chr3 (603-643)||(27055266-27055306)
[»] chr8 (20 HSPs)
chr8 (449-676)||(16752012-16752240)
chr8 (556-678)||(40541730-40541855)
chr8 (613-678)||(2040273-2040338)
chr8 (449-530)||(2040178-2040261)
chr8 (556-678)||(26575020-26575146)
chr8 (601-676)||(15761257-15761333)
chr8 (280-360)||(2039989-2040069)
chr8 (280-354)||(16751830-16751904)
chr8 (611-678)||(30240267-30240335)
chr8 (559-674)||(1018082-1018199)
chr8 (279-358)||(40542214-40542294)
chr8 (487-557)||(40542049-40542120)
chr8 (609-678)||(8582205-8582275)
chr8 (610-678)||(26879737-26879807)
chr8 (611-674)||(6810986-6811048)
chr8 (602-678)||(29384209-29384290)
chr8 (602-676)||(11879756-11879830)
chr8 (602-676)||(11897172-11897246)
chr8 (611-669)||(45403194-45403253)
chr8 (592-676)||(23142319-23142404)
[»] scaffold0027 (2 HSPs)
scaffold0027 (499-678)||(133025-133206)
scaffold0027 (280-355)||(133313-133388)
[»] scaffold0182 (2 HSPs)
scaffold0182 (449-675)||(24370-24602)
scaffold0182 (279-360)||(24190-24271)
[»] chr4 (29 HSPs)
chr4 (556-678)||(55476083-55476207)
chr4 (559-675)||(18403639-18403757)
chr4 (449-554)||(8409349-8409455)
chr4 (592-675)||(8409725-8409810)
chr4 (556-676)||(8011035-8011157)
chr4 (602-663)||(8020714-8020775)
chr4 (602-678)||(24719730-24719807)
chr4 (281-360)||(55475585-55475664)
chr4 (556-678)||(4156961-4157084)
chr4 (603-676)||(6346854-6346928)
chr4 (556-678)||(7044871-7044995)
chr4 (556-674)||(9149624-9149744)
chr4 (280-360)||(8409179-8409259)
chr4 (603-676)||(8367344-8367419)
chr4 (592-678)||(7045085-7045174)
chr4 (556-645)||(8743708-8743800)
chr4 (556-675)||(20812635-20812759)
chr4 (604-648)||(10394768-10394812)
chr4 (592-676)||(17466223-17466309)
chr4 (556-628)||(7825158-7825231)
chr4 (611-676)||(5375829-5375895)
chr4 (611-674)||(46664210-46664269)
chr4 (556-646)||(18459546-18459637)
chr4 (592-676)||(36120968-36121053)
chr4 (604-644)||(5846050-5846090)
chr4 (604-675)||(5884193-5884265)
chr4 (592-676)||(9911310-9911396)
chr4 (613-676)||(10143066-10143130)
chr4 (602-654)||(27527953-27528005)
[»] chr5 (23 HSPs)
chr5 (556-676)||(41427513-41427636)
chr5 (576-678)||(15052001-15052101)
chr5 (556-655)||(19377707-19377809)
chr5 (556-651)||(187809-187906)
chr5 (556-678)||(22984711-22984836)
chr5 (449-525)||(15052101-15052177)
chr5 (466-557)||(41427311-41427403)
chr5 (556-678)||(15446305-15446431)
chr5 (556-674)||(24648125-24648245)
chr5 (449-551)||(19377234-19377337)
chr5 (609-678)||(43005756-43005826)
chr5 (602-676)||(9996882-9996957)
chr5 (297-360)||(41427100-41427163)
chr5 (615-676)||(19579111-19579173)
chr5 (611-676)||(20321107-20321173)
chr5 (454-550)||(22984928-22985024)
chr5 (297-356)||(4289827-4289886)
chr5 (301-360)||(19377076-19377135)
chr5 (592-648)||(26021464-26021522)
chr5 (602-662)||(13348812-13348874)
chr5 (611-676)||(18843880-18843945)
chr5 (592-676)||(23172327-23172413)
chr5 (602-676)||(41688565-41688638)
[»] chr6 (21 HSPs)
chr6 (555-678)||(27890479-27890605)
chr6 (557-678)||(31108252-31108374)
chr6 (449-557)||(27890301-27890410)
chr6 (556-678)||(31407402-31407528)
chr6 (556-675)||(33593063-33593186)
chr6 (556-678)||(18490536-18490660)
chr6 (569-667)||(20399994-20400096)
chr6 (556-678)||(20432503-20432628)
chr6 (556-674)||(7621882-7622003)
chr6 (570-676)||(5422564-5422665)
chr6 (604-674)||(8275434-8275503)
chr6 (609-678)||(4841726-4841796)
chr6 (603-678)||(4596764-4596843)
chr6 (592-676)||(23897955-23898041)
chr6 (291-359)||(27890143-27890211)
chr6 (602-676)||(26053195-26053269)
chr6 (602-676)||(26073248-26073322)
chr6 (592-643)||(645417-645470)
chr6 (631-676)||(3573799-3573845)
chr6 (611-676)||(10508916-10508982)
chr6 (611-676)||(7918249-7918312)
[»] scaffold1178 (1 HSPs)
scaffold1178 (556-678)||(429-554)
[»] scaffold0684 (1 HSPs)
scaffold0684 (556-676)||(5124-5246)
[»] scaffold0526 (3 HSPs)
scaffold0526 (564-678)||(8260-8375)
scaffold0526 (452-557)||(7909-8015)
scaffold0526 (311-360)||(7770-7819)
[»] scaffold0163 (1 HSPs)
scaffold0163 (556-676)||(2872-2994)
[»] scaffold0017 (4 HSPs)
scaffold0017 (557-678)||(38436-38565)
scaffold0017 (455-557)||(128792-128895)
scaffold0017 (298-360)||(129010-129072)
scaffold0017 (556-592)||(128674-128710)
[»] scaffold0061 (5 HSPs)
scaffold0061 (449-557)||(1739-1848)
scaffold0061 (449-557)||(7250-7359)
scaffold0061 (602-678)||(76218-76299)
scaffold0061 (298-360)||(1957-2019)
scaffold0061 (298-360)||(7468-7530)
[»] scaffold0001 (1 HSPs)
scaffold0001 (556-675)||(142725-142845)
[»] scaffold0259 (1 HSPs)
scaffold0259 (603-678)||(18540-18616)
[»] scaffold0079 (3 HSPs)
scaffold0079 (631-678)||(14836-14883)
scaffold0079 (449-519)||(14927-14997)
scaffold0079 (280-360)||(15096-15176)
[»] scaffold0603 (1 HSPs)
scaffold0603 (592-676)||(8858-8945)
[»] scaffold2084 (1 HSPs)
scaffold2084 (631-678)||(1-48)
[»] scaffold0186 (1 HSPs)
scaffold0186 (592-676)||(8587-8671)
[»] scaffold0048 (1 HSPs)
scaffold0048 (618-678)||(48559-48620)
[»] scaffold0042 (1 HSPs)
scaffold0042 (615-678)||(93602-93665)
[»] scaffold0016 (1 HSPs)
scaffold0016 (617-676)||(56324-56384)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 1e-92; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 449 - 678
Target Start/End: Complemental strand, 23618570 - 23618339
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 548  Q
    |||| |||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||    
T  23618570 ataagggtcaatttttgacccggttcgtaaattgatccgatttgagtccatgacccgttctataaataaccaaaaggccaaaatttttcattccttcact 23618471  T
Q  549 tcccccacatttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttgg 646  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||| |||||||||| ||||||||||||||||    
T  23618470 tcccccacatttatgtatatgtattttgtagactttgaactttagtcatttatgactatatgcaatttataatatatatttaacattatttttgttttgg 23618371  T
Q  647 tagaatcctcgattttgattgcgattttacga 678  Q
    |||||||||||||||||||| |||||||||||    
T  23618370 tagaatcctcgattttgattacgattttacga 23618339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 454 - 678
Target Start/End: Complemental strand, 25842867 - 25842641
Alignment:
Q  454 ggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcacttcccc 553  Q
    ||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||||||||  ||||||||||   ||| |||| |||||||||||    
T  25842867 ggtcaatttttgacaaggttcgtaaattgacccgatttgaatccatgacccattctataaatacctgaaaggccaaaaaatttcattccttcacttcccc 25842768  T
Q  554 cacatttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaa 651  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25842767 aacatttatgtgtatgtattttgtggactttgaactttagtcatttatgactatatgcaatttataacatatatttaacattatttttgttttggtagaa 25842668  T
Q  652 tcctcgattttgattgcgattttacga 678  Q
    |||||||||||||||||||||||||||    
T  25842667 tcctcgattttgattgcgattttacga 25842641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 454 - 678
Target Start/End: Complemental strand, 8254245 - 8254016
Alignment:
Q  454 ggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcacttcccc 553  Q
    ||||||||||||||| ||||| ||||||||||  ||||||||||||||||||||||||||||||||||||| |||||   ||| |||| |||||||||||    
T  8254245 ggtcaatttttgaccaggttcataaattgacccaatttgaatccatgacccgttctataaatacccaaaagaccaaaaaatttcattccttcacttcccc 8254146  T
Q  554 cacatttatgtatatgtattttgtggactttgaactttagtcatttat-----ctatatgcaatttataacatatatttaaaattatttttgttttggta 648  Q
    |||||||||| |||||||||||||  ||||||||||||||||||||||     |||||||||||||||||||||||||||| ||||||||||||||||||    
T  8254145 cacatttatgcatatgtattttgttcactttgaactttagtcatttatgatgactatatgcaatttataacatatatttaacattatttttgttttggta 8254046  T
Q  649 gaatcctcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||||||||||||||    
T  8254045 gaatcctcgattttgattgcgattttacga 8254016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 556 - 678
Target Start/End: Complemental strand, 1981357 - 1981233
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||  ||||||||||||||| |||||||    
T  1981357 catttatgtatatgtattttgtggactttgaactttagtcatttatgactatatgcaatttataacatatatttagcattatttttgttttgatagaatc 1981258  T
Q  654 ctcgattttgattgcgattttacga 678  Q
    ||||||||||||||| |||||||||    
T  1981257 ctcgattttgattgcaattttacga 1981233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 556 - 678
Target Start/End: Complemental strand, 8629760 - 8629638
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttatctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcct 655  Q
    |||||||||||||||||||||||||||||||| || ||  ||||||   ||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  8629760 catttatgtatatgtattttgtggactttgaatttaagatatttatgactatgcaatttataacatatatttagcattatttttgttttggtagaatcct 8629661  T
Q  656 cgattttgattgcgattttacga 678  Q
    || ||||||||||||||||||||    
T  8629660 cggttttgattgcgattttacga 8629638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 556 - 675
Target Start/End: Original strand, 8304179 - 8304302
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatattt--aaaattatttttgttttggtagaa 651  Q
    ||||||| |||||| ||||| ||||||||||||||||| |||||||  ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  8304179 catttatatatatgcattttttggactttgaactttagacatttatgactatatgcaatttataacatatatttttaaaattatttttgttttggtagaa 8304278  T
Q  652 tcctcgattttgattgcgatttta 675  Q
    ||||||||||||||||| ||||||    
T  8304279 tcctcgattttgattgcaatttta 8304302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 449 - 557
Target Start/End: Complemental strand, 1981671 - 1981563
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 548  Q
    |||| ||||||||||||| ||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  1981671 ataagggtcaatttttgatccggttcataaattgacccgatttgaatccatgaccggttcaataaatacccaaaaggccaaaattttttattctttcact 1981572  T
Q  549 tcccccaca 557  Q
    |||||||||    
T  1981571 tcccccaca 1981563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 602 - 678
Target Start/End: Original strand, 7307154 - 7307229
Alignment:
Q  602 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgattttacga 678  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7307154 ctatatgcaatttata-catatatttaacattatttttgttttggtagaatcttcgattttgattgcgattttacga 7307229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 454 - 557
Target Start/End: Original strand, 8303599 - 8303703
Alignment:
Q  454 ggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccg-ttctataaatacccaaaaggccaaacttttttattctttcacttccc 552  Q
    |||||||||||||||| |||| ||||||||||  ||||||||||| |||||  ||||||||||||||||||||||| | | ||| |||||||||||||||    
T  8303599 ggtcaatttttgacccagttcataaattgacccaatttgaatccacgacccaattctataaatacccaaaaggccatattgtttcattctttcacttccc 8303698  T
Q  553 ccaca 557  Q
    |||||    
T  8303699 ccaca 8303703  T

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Target: chr7; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 556 - 678
Target Start/End: Complemental strand, 26565568 - 26565445
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    |||||||||||| |||||||||||||||| ||| | ||||||||||  |||||| || ||||||||||||| |||| |||||||||||||||||| ||||    
T  26565568 catttatgtataagtattttgtggactttaaac-tgagtcatttatgactatatacagtttataacatata-ttaacattatttttgttttggtaaaatc 26565471  T
Q  654 c-tcgattttgattgcgattttacga 678  Q
    | || ||||||||||| |||||||||    
T  26565470 catcaattttgattgcaattttacga 26565445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 8254439 - 8254359
Alignment:
Q  280 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    ||||||||| ||||| ||||||||||||  ||||||||| |||||||||||||||||| |||||||||||||||| |||||    
T  8254439 cattgttatcaaaaacccgacttaagtctcaaaatcctggtttttgcgactttgcgtagcttcaacgactcaaattcatag 8254359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 603 - 678
Target Start/End: Complemental strand, 17809100 - 17809024
Alignment:
Q  603 tatatgcaatttataacatatatttaaaattatttttgttttggtagaatc-ctcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||  |  |||||||||||||||||||||    
T  17809100 tatatgcaatttataacatatatttagcattatttttgttttggtagaatctatgaattttgattgcgattttacga 17809024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 281 - 360
Target Start/End: Complemental strand, 25843061 - 25842981
Alignment:
Q  281 attgttataaaaaatccga-cttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    |||||||||||||| || | ||||||||  ||||||||  |||||||||||||| ||| ||||||||||||||||||||||    
T  25843061 attgttataaaaaaacccaacttaagtctcaaaatcctagtttttgcgactttgtgtagcttcaacgactcaaatccatag 25842981  T

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Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 609 - 675
Target Start/End: Original strand, 30294408 - 30294475
Alignment:
Q  609 caatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttta 675  Q
    ||||||||||||||||||||| ||||| |||||||||||| ||||| |||| |||||||| |||||||    
T  30294408 caatttataacatatatttaacattatctttgttttggtaaaatccatcgagtttgattgtgatttta 30294475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 608 - 678
Target Start/End: Original strand, 4574878 - 4574949
Alignment:
Q  608 gcaatttataacatatatttaaaattatttttgttttggtagaatc-ctcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||| |  ||||||||| |||||||| ||||  |||||||||| |||||||||||||    
T  4574878 gcaatttataacatatattaagcattatttttattttggtaaaatctatcgattttgactgcgattttacga 4574949  T

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Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 8303433 - 8303495
Alignment:
Q  297 cgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccata 359  Q
    |||||||||||  ||||| | | |||||||||||||||||| |||||||||||||||| ||||    
T  8303433 cgacttaagtctcaaaattcaggtttttgcgactttgcgtagcttcaacgactcaaattcata 8303495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 654
Target Start/End: Complemental strand, 21157703 - 21157605
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttatc--tatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    |||||||||||| ||||||||| |||||| |||   |||||||||    ||||| | ||||||||||||||||||  |||| ||||||||||||||||||    
T  21157703 catttatgtataagtattttgtagactttaaacg--agtcatttacgattatataccatttataacatatatttagcattacttttgttttggtagaatc 21157606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 676
Target Start/End: Original strand, 5058673 - 5058759
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||  |||||| | ||||||||||||||||||  |||||| || |||||||| | ||| ||||||||||||||||||||||    
T  5058673 agtcatttatgactatataccatttataacatatatttagtattattatt-ttttggtaaagtccatcgattttgattgcgattttac 5058759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 360
Target Start/End: Complemental strand, 23618749 - 23618669
Alignment:
Q  281 attgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaactt-caacgactcaaatccatag 360  Q
    |||||||| ||||| | ||||||||||  ||||||||| ||| |||||||||| ||| ||| ||||||||| |||||||||    
T  23618749 attgttatcaaaaacctgacttaagtctcaaaatcctggtttatgcgactttgtgtagctttcaacgactcgaatccatag 23618669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 676
Target Start/End: Complemental strand, 7730324 - 7730258
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||||||||||  ||| ||||| | |||||| ||||| || |||||||||||||||||||    
T  7730324 atttataacatatatttagtattttttttttgttggtaaaatccatcaattttgattgcgattttac 7730258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 676
Target Start/End: Original strand, 17811512 - 17811578
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    |||||||| |||||||||| |||| | || ||| |||| ||||| ||||||||||||||||||||||    
T  17811512 atttataaaatatatttaatattaatattttttgggtaaaatccatcgattttgattgcgattttac 17811578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 611 - 675
Target Start/End: Original strand, 4247521 - 4247585
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttta 675  Q
    |||| |||||||||||||  ||||||||| ||| |||| ||||| |||||||||||||||||||||    
T  4247521 atttgtaacatatatttagtattattttt-tttaggtaaaatccatcgattttgattgcgatttta 4247585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 358
Target Start/End: Complemental strand, 26281442 - 26281361
Alignment:
Q  277 aaccattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccat 358  Q
    |||||||||| | |||| |||||||||| ||||||||| | |  ||||||||||||    | ||||||||||||||||||||    
T  26281442 aaccattgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaatccat 26281361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 631 - 678
Target Start/End: Complemental strand, 26340330 - 26340282
Alignment:
Q  631 attatttttgttttggtagaa-tcctcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||||| |  ||||||||||||| ||||||||||    
T  26340330 attatttttgttttggtagaatttatcgattttgattgtgattttacga 26340282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 592 - 676
Target Start/End: Complemental strand, 44944830 - 44944744
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||  |||||| | ||||||||||||||||||  |||||| || |||||||| | ||  ||||||||||||||||||||||    
T  44944830 agtcatttatgactatataccatttataacatatatttagtattattatt-ttttggtaaagtctatcgattttgattgcgattttac 44944744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 7e-91; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 449 - 675
Target Start/End: Complemental strand, 17197669 - 17197441
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 548  Q
    |||| |||||||||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||  |||| |||||||||||    
T  17197669 ataagggtcaatttttgacccagtttgtaaattgacccgatttgaatccatgatccgttctataaatacccaaaaggccaaaagttttcattctttcact 17197570  T
Q  549 tcccccacatttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttgg 646  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||||||||    
T  17197569 tcccccacatttatgtatatgtattttacggactttgaactttagtcatttatgactatatgcaatttgtaacatatatttaacattatttttgttttgg 17197470  T
Q  647 tagaatcctcgattttgattgcgatttta 675  Q
    |||||||||||||||||||||||||||||    
T  17197469 tagaatcctcgattttgattgcgatttta 17197441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 560 - 678
Target Start/End: Complemental strand, 12002890 - 12002769
Alignment:
Q  560 tatgtatatgtattttgtggactttgaacttta-gtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctc 656  Q
    |||||||||||||||||||||||||||| |||| |||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||||||     
T  12002890 tatgtatatgtattttgtggactttgaattttaagtcatttatgactatatgcaatttataacatatatttagcattatttttgttttggtagaatcctt 12002791  T
Q  657 gattttgattgcgattttacga 678  Q
    ||||||||||||||||||||||    
T  12002790 gattttgattgcgattttacga 12002769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 276 - 360
Target Start/End: Original strand, 4527 - 4611
Alignment:
Q  276 taaccattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    |||||||||||||||||||  |||||||||||  |||||  || |||||||||||||||||| |||||||||||||||| |||||    
T  4527 taaccattgttataaaaaacgcgacttaagtctcaaaattttggtttttgcgactttgcgtagcttcaacgactcaaattcatag 4611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 281 - 360
Target Start/End: Complemental strand, 17197825 - 17197747
Alignment:
Q  281 attgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    |||||||| ||||| ||||||||||||  ||||||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  17197825 attgttatcaaaaacccgacttaagtctcaaaatcctggtttatgcgactttgcgt-acttcaacgactcaaatccatag 17197747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 449 - 557
Target Start/End: Complemental strand, 12003122 - 12003014
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcac 547  Q
    |||| ||||||||||||||||| ||||||||||||||  |||| ||||||| |||| ||||||| |||| |||||||  |||| ||||| |||| |||||    
T  12003122 ataagggtcaatttttgacccgattcgtaaattgacccaatttaaatccataacccggttctatcaatatccaaaagcacaaa-tttttcattccttcac 12003024  T
Q  548 ttcccccaca 557  Q
    ||||||||||    
T  12003023 ttcccccaca 12003014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 623 - 675
Target Start/End: Original strand, 8773432 - 8773484
Alignment:
Q  623 tatttaaaattatttttgttttggtagaatcctcgattttgattgcgatttta 675  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  8773432 tatttaacattatttttgttttggtagaatcctcgatttttattgcgatttta 8773484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 611 - 674
Target Start/End: Original strand, 16434674 - 16434739
Alignment:
Q  611 atttataacatatatttaaaatta-tttttgttttggtagaatcc-tcgattttgattgcgatttt 674  Q
    ||||||||||||||||||  |||| |||||||||||||||||||| ||||||||||||||||||||    
T  16434674 atttataacatatatttatcattaatttttgttttggtagaatccatcgattttgattgcgatttt 16434739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 556 - 624
Target Start/End: Original strand, 8773067 - 8773138
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatata 624  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||||||  || ||||||||||||||||||||    
T  8773067 catttatgtatatttattttgcggactttgaactttaagtcatttatgactctatgcaatttataacatata 8773138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 646
Target Start/End: Original strand, 24117603 - 24117694
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttgg 646  Q
    ||||||||||||||||||||||| ||||| || ||| ||||||||||  |||||||||||||| |||  |||||||  ||||||||||||||||    
T  24117603 catttatgtatatgtattttgtgaactttaaattttgagtcatttatgactatatgcaatttaaaac--atatttagcattatttttgttttgg 24117694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 678
Target Start/End: Complemental strand, 18891615 - 18891491
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    |||||||||||| |||||||||||| ||| ||||  | ||||||||  |||| |  ||||||||| |||||||||| |||||||| ||||||||| |||     
T  18891615 catttatgtataagtattttgtggaatttaaactgaa-tcatttatgactatctataatttataatatatatttaacattattttcgttttggtaaaatt 18891517  T
Q  654 c-tcgattttgattgcgattttacga 678  Q
    | || ||||||||||||||| |||||    
T  18891516 catcaattttgattgcgattctacga 18891491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 556 - 676
Target Start/End: Complemental strand, 17055938 - 17055818
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    |||||||||||| |||||||||||||||| || || |||||| |||  ||||||  |||||||| |  |||||||  |||||||||||||||||| ||||    
T  17055938 catttatgtataagtattttgtggacttt-aaattgagtcatatatgactatatataatttatagc--atatttagcattatttttgttttggtaaaatc 17055842  T
Q  654 c-tcgattttgattgcgattttac 676  Q
    | || ||||||||||| |||||||    
T  17055841 catccattttgattgcaattttac 17055818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 556 - 600
Target Start/End: Original strand, 22789307 - 22789352
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttt-agtcattta 600  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  22789307 catttatgtatatgtattttgtggactttgaactttgagtcattta 22789352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 455 - 550
Target Start/End: Original strand, 8772859 - 8772956
Alignment:
Q  455 gtcaatttttgacccggttcgtaaattgaccggatttgaatccatga-cccgttctataaataccc-aaaaggccaaacttttttattctttcacttc 550  Q
    |||||||||||||||  ||||| |||||| |  |||||||||||||| || || |||||||||||| |||||||||||  | || |||||||||||||    
T  8772859 gtcaatttttgacccaattcgtcaattgatccaatttgaatccatgatccggtgctataaatacccaaaaaggccaaaaatattcattctttcacttc 8772956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 8772719 - 8772783
Alignment:
Q  296 ccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    ||||||||| ||  ||||||| || ||||||||||||| ||| ||||||| ||||||||||||||    
T  8772719 ccgacttaaatcccaaaatccagaattttgcgactttgtgtagcttcaacaactcaaatccatag 8772783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 654
Target Start/End: Complemental strand, 16446731 - 16446679
Alignment:
Q  603 tatatgcaatttataacatatatttaaaattat-ttttgttttggtagaatcc 654  Q
    ||||||||||||||||||||||||||  ||||| ||||||||| |||||||||    
T  16446731 tatatgcaatttataacatatatttagtattatattttgtttttgtagaatcc 16446679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 678
Target Start/End: Original strand, 22789348 - 22789402
Alignment:
Q  624 atttaaaattatttttgttttggtagaatcctcgattttgattgcgattttacga 678  Q
    |||||| |||||||||||||||||||| || || || |||||||| |||||||||    
T  22789348 atttaacattatttttgttttggtagattcatccatgttgattgcaattttacga 22789402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 27502302 - 27502252
Alignment:
Q  310 aaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    ||||||| ||||||||  ||||||  |||||||||||||||||||||||||    
T  27502302 aaaatccagatttttgtaactttgtttaacttcaacgactcaaatccatag 27502252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 592 - 676
Target Start/End: Complemental strand, 42180050 - 42179963
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||  |||||| | ||||||||||||||| ||  ||||| ||| |||||||| ||||| ||||||||||||| | ||||||    
T  42180050 agtcatttatgactatataccatttataacatatatatagtattatattttttttggtaaaatccatcgattttgattgtggttttac 42179963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 3e-90; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 454 - 678
Target Start/End: Original strand, 34577884 - 34578108
Alignment:
Q  454 ggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcacttcccc 553  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    || |||| |||||||||||    
T  34577884 ggtcaatttttgacatggttcgtaaattgacccgatttgaatccatgacccgttctataaatacccgaaaggccaaaaaaattcattcattcacttcccc 34577983  T
Q  554 cacatttatgtatatgtattttgtggactttgaactttagtcatttatctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34577984 cacatttatgtatatgtattttgtggactttgaactttagtcatttatgactatgcaatttataacatatatttaacattatttttgttttggtagaatc 34578083  T
Q  654 ctcgattttgattgcgattttacga 678  Q
    |||||||||||||||||||||||||    
T  34578084 ctcgattttgattgcgattttacga 34578108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 454 - 678
Target Start/End: Complemental strand, 20034357 - 20034132
Alignment:
Q  454 ggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcacttcccc 553  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||   |||  || ||||||||||||    
T  20034357 ggtcaatttttgacccggttcataaatttacccgatttgaatccatgacccgttctataaatacccaaaaggccaaaaaatttctttttttcacttcccc 20034258  T
Q  554 cacatttatgtatatgtattttgtggactttgaactttagtcatttatc--tatatgcaatttataacatatatttaaaattatttttgttttggtagaa 651  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20034257 cacatttatgta-atgtattttgtggattttgaactttagtcatttatgagtatatgcaatttataacatatatttaacattatttttgttttggtagaa 20034159  T
Q  652 tcctcgattttgattgcgattttacga 678  Q
    |||||||||||||||||||||||||||    
T  20034158 tcctcgattttgattgcgattttacga 20034132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 454 - 678
Target Start/End: Complemental strand, 27524232 - 27524006
Alignment:
Q  454 ggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcacttcccc 553  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||  |||| ||| ||||||||||||    
T  27524232 ggtcaatttttgagccggttcgtaaattgacccgatttgaatccatgacccgttctataaatacccaaaagggcaaaaattttcattatttcacttcccc 27524133  T
Q  554 cacatttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaa 651  Q
    ||||||| | ||||||||||||||||||||||||||||| ||||||||   |||||||||||||||| |||||||||| |||||||||||||||||||||    
T  27524132 cacatttgtctatatgtattttgtggactttgaactttaatcatttatgaatatatgcaatttataatatatatttaacattatttttgttttggtagaa 27524033  T
Q  652 tcctcgattttgattgcgattttacga 678  Q
     |||||||||||||||| |||||||||    
T  27524032 ccctcgattttgattgcaattttacga 27524006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 499 - 674
Target Start/End: Original strand, 7301825 - 7302002
Alignment:
Q  499 tgacccgttctataaatacccaaaaggccaaacttttttattctttcacttcccccacatttatgtatatgtattttgtggactttgaactttagtcatt 598  Q
    |||||||||||||||||||||||| |||||||   ||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  7301825 tgacccgttctataaatacccaaatggccaaaaaatttcattccttcacttcccccacgtttatgcatatgtattttgtggactttgaactttagtcatt 7301924  T
Q  599 tat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgatttt 674  Q
    |||  | |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  7301925 tatgaccatatgcaatttataacatatatttaacattatttttattttggtagaatcctcgattttgattgcgatttt 7302002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 556 - 678
Target Start/End: Original strand, 974432 - 974557
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttta-gtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 652  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  974432 catttatgtatatgtattttgtggactttgaactttaagtcatttatgactatatgcaatttataacatatatttaacattatttttgttttggtagaat 974531  T
Q  653 cctcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||||||||||    
T  974532 cctcgattttgattgcgattttacga 974557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 556 - 678
Target Start/End: Original strand, 41002120 - 41002244
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  41002120 catttatgtatatgtattttgtggactttgaactttagtcatttatgactatatgcaatttataacatatatttagcattatttttgttttggtagaatc 41002219  T
Q  654 ctcgattttgattgcgattttacga 678  Q
    ||||||||||||| |||||||||||    
T  41002220 ctcgattttgattacgattttacga 41002244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 556 - 678
Target Start/End: Complemental strand, 21869356 - 21869231
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttta-gtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 652  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||  |||||||||||||||||||||||||||  || |||||||||||||||||||    
T  21869356 catttatgtatatgtattttgtggactttgaactttaagttatttatgactatatgcaatttataacatatatttagcataatttttgttttggtagaat 21869257  T
Q  653 cctcgattttgattgcgattttacga 678  Q
    | ||||||||||||| ||||||||||    
T  21869256 catcgattttgattgggattttacga 21869231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 449 - 553
Target Start/End: Complemental strand, 21869777 - 21869672
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcac 547  Q
    |||| ||||||||||||||||||||||| ||||  || |||||||||||||||||| ||||||||||||||||||| |||||  ||||| ||||||||||    
T  21869777 ataagggtcaatttttgacccggttcgtcaattagcccgatttgaatccatgacccagttctataaatacccaaaatgccaatttttttcattctttcac 21869678  T
Q  548 ttcccc 553  Q
    ||||||    
T  21869677 ttcccc 21869672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 556 - 675
Target Start/End: Original strand, 27406899 - 27407020
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    ||||||||||||||||||||||||||||| ||| | ||||||||||  |||||| || ||||||| |||||||||  |||||||||||||||||  ||||    
T  27406899 catttatgtatatgtattttgtggactttaaac-tgagtcatttattactatatacagtttataatatatatttagcattatttttgttttggtgaaatc 27406997  T
Q  654 c-tcgattttgattgcgatttta 675  Q
    | || ||||||||||||||||||    
T  27406998 catcaattttgattgcgatttta 27407020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 557 - 678
Target Start/End: Original strand, 26251621 - 26251748
Alignment:
Q  557 atttatgtatatgtattttgtggactttgaacttt--agtcatttat--ctatatgcaatttataacatatatttaaaattatttttg-ttttggtagaa 651  Q
    |||||| |||| |||||||||||||||  ||||||  ||||||||||  |||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  26251621 atttatttataggtattttgtggacttgaaacttttgagtcatttatgactatatgcaatttataacatatatttaccattatttttgattttggtagaa 26251720  T
Q  652 tc-ctcgattttgattgcgattttacga 678  Q
    ||   ||||||||||||| |||||||||    
T  26251721 tctaccgattttgattgcaattttacga 26251748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 611 - 678
Target Start/End: Complemental strand, 13502638 - 13502570
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  13502638 atttataacatatatttaatattatttttgttttggtaaaatccatcgattttgattgcgattttacga 13502570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 280 - 359
Target Start/End: Complemental strand, 20034531 - 20034452
Alignment:
Q  280 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccata 359  Q
    ||||||||| ||||| || |||||||||  ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  20034531 cattgttatcaaaaacccaacttaagtctcaaaatcctggtttttgcgactttgcgtagcttcaacgactcaaatccata 20034452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 282 - 360
Target Start/End: Original strand, 34577702 - 34577780
Alignment:
Q  282 ttgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    ||||||| ||||| |||||||||||| |||||||||| |||||||||||||| ||| | ||||||||||||||||||||    
T  34577702 ttgttatcaaaaacccgacttaagtcttaaaatcctggtttttgcgactttgtgtagcatcaacgactcaaatccatag 34577780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 572 - 678
Target Start/End: Original strand, 34841705 - 34841813
Alignment:
Q  572 ttttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgc 668  Q
    ||||||||||||| ||||  ||| ||||||  |||||| ||||||||||||||||||||  ||||||||||||| | |||||||| ||||||||||||||    
T  34841705 ttttgtggactttaaactg-agttatttatgactatatacaatttataacatatatttattattatttttgtttggatagaatccatcgattttgattgc 34841803  T
Q  669 gattttacga 678  Q
    ||||||||||    
T  34841804 gattttacga 34841813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 560 - 676
Target Start/End: Original strand, 24473931 - 24474051
Alignment:
Q  560 tatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-t 655  Q
    |||||||| |||||||||||| ||| |||||| ||||||||||  |||||||||||||||| ||| ||||||  |||| |||||||||||||||||||      
T  24473931 tatgtataagtattttgtggaattttaacttttagtcatttataactatatgcaatttatatcatctatttatcattaattttgttttggtagaatccaa 24474030  T
Q  656 cgattttgattgcgattttac 676  Q
    ||||||| |||| ||||||||    
T  24474031 cgattttaattgtgattttac 24474051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 449 - 553
Target Start/End: Original strand, 41001916 - 41002021
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccg-ttctataaatacccaaaaggccaaacttttttattctttcac 547  Q
    |||| ||||||||||||| | |||||||||||||||| |||||| |||||||||||| |||||||||||||| ||||| ||||    || ||||||||||    
T  41001916 ataagggtcaatttttgaacgggttcgtaaattgacccgatttgtatccatgacccgattctataaataccctaaaggtcaaaaaaattcattctttcac 41002015  T
Q  548 ttcccc 553  Q
    ||||||    
T  41002016 ttcccc 41002021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 556 - 676
Target Start/End: Complemental strand, 25539166 - 25539044
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    ||||||| |||| |||||||||||||||| ||||  ||||||||||  |||||| |||| |||||||||||||||  ||||||| |||||||||| ||||    
T  25539166 catttatttataagtattttgtggactttaaactg-agtcatttatgactatatacaatatataacatatatttagcattatttctgttttggtaaaatc 25539068  T
Q  654 -ctcgattttgattgcgattttac 676  Q
      |||||||||||||| |||||||    
T  25539067 tatcgattttgattgcaattttac 25539044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 556 - 674
Target Start/End: Original strand, 19245691 - 19245812
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 652  Q
    |||||||| | | |||||||||||||||| |||||| ||||||||||  ||| ||||||||| || ||||||||||| ||||||||| ||||||||||||    
T  19245691 catttatgcaaaagtattttgtggactttaaactttgagtcatttatgactacatgcaatttctatcatatatttaacattatttttattttggtagaat 19245790  T
Q  653 cc-tcgattttgattgcgatttt 674  Q
    || |||| ||||||| |||||||    
T  19245791 ccatcga-tttgattacgatttt 19245812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 974190 - 974270
Alignment:
Q  280 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    ||||||||| |||||  ||||||||||| |||||||||| |||||||||||||| ||| |||||| ||||||||| |||||    
T  974190 cattgttatcaaaaacgcgacttaagtcctaaaatcctggtttttgcgactttgtgtagcttcaatgactcaaattcatag 974270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 19519530 - 19519606
Alignment:
Q  603 tatatgcaatttataacatatatttaaaattatttttgttttggtagaatc-ctcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||||||||||  |||||||| ||||| ||||||||  || |||||||||||||||||||||    
T  19519530 tatatgcaatttataacatatatttagcattattttggtttttgtagaatctatcaattttgattgcgattttacga 19519606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 27524416 - 27524336
Alignment:
Q  280 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    ||||||||| ||||| ||||||||||||  ||||| ||| |||||||||||||||||| |||| |||||||||||| ||||    
T  27524416 cattgttatcaaaaacccgacttaagtctcaaaattctggtttttgcgactttgcgtagcttcgacgactcaaatctatag 27524336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 572 - 678
Target Start/End: Original strand, 16766910 - 16767017
Alignment:
Q  572 ttttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgc 668  Q
    ||||||||||||| ||||  ||||||||||  || ||| |||||||||||| |||||||  |||||||||||||||||| ||||| | ||||||||||||    
T  16766910 ttttgtggactttaaactg-agtcatttatgactgtatacaatttataacaaatatttagcattatttttgttttggta-aatcctttgattttgattgc 16767007  T
Q  669 gattttacga 678  Q
    ||||||||||    
T  16767008 gattttacga 16767017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 611 - 675
Target Start/End: Original strand, 31023466 - 31023531
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttta 675  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||| ||||||||    
T  31023466 atttataacatatatttaacattatttttattttggtaaaatccatcgattttgattacgatttta 31023531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 556 - 624
Target Start/End: Complemental strand, 27749784 - 27749713
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatata 624  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||||  ||| |||||||||||||||||||    
T  27749784 catttatgtgtatgtattttgtagactttgaactttgagtcatttatgactacatgcaatttataacatata 27749713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 678
Target Start/End: Original strand, 19492040 - 19492165
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatt-tttgttttggtagaat 652  Q
    |||||||||||| ||||| |||||||||| |||   ||| ||||||  |||||| ||||||||||||||||||||  |||||| ||| |||||||| |||    
T  19492040 catttatgtataagtattctgtggactttaaacag-agttatttatgactatatacaatttataacatatatttagcattattattttttttggtaaaat 19492138  T
Q  653 cc-tcgattttgattgcgattttacga 678  Q
    || |||||||||||| || ||||||||    
T  19492139 ccatcgattttgattacggttttacga 19492165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 41001770 - 41001829
Alignment:
Q  301 ttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    |||||||  ||||||||| ||||||| |||||||||| ||||||||||||||||||||||    
T  41001770 ttaagtctcaaaatcctggtttttgcaactttgcgtagcttcaacgactcaaatccatag 41001829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 667
Target Start/End: Complemental strand, 5395544 - 5395430
Alignment:
Q  556 catttatgtatat-gtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 652  Q
    ||||||||||||  |||||| ||||||||| || ||  |||||||||  |||||| ||||||||||||||| || || |||||||||||||||||| |||    
T  5395544 catttatgtataaagtatttggtggactttaaa-ttgggtcatttatgactatatacaatttataacatattttgaacattatttttgttttggtaaaat 5395446  T
Q  653 c-ctcgattttgattg 667  Q
    |  |||||||||||||    
T  5395445 ctttcgattttgattg 5395430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 678
Target Start/End: Complemental strand, 27749466 - 27749419
Alignment:
Q  631 attatttttgttttggtagaatcctcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||||||||||| |||| || | ||||||||||    
T  27749466 attatttttgttttggtagaatcctcgttttttatcgtgattttacga 27749419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 678
Target Start/End: Complemental strand, 1690701 - 1690625
Alignment:
Q  602 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 678  Q
    |||||| | |||||||| |||||||||| |||||| || |||||||| |||   ||||||||||||||||||||||||    
T  1690701 ctatataccatttataaaatatatttaatattattatt-ttttggtaaaatttatcgattttgattgcgattttacga 1690625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 610 - 678
Target Start/End: Original strand, 8428385 - 8428454
Alignment:
Q  610 aatttataacatatatttaaaattatttttgttttggtagaa-tcctcgattttgattgcgattttacga 678  Q
    ||||||||| ||||| |||  |||||||||||||||||| || || |||||||  |||||||||||||||    
T  8428385 aatttataatatatagttagcattatttttgttttggtataattcatcgatttgtattgcgattttacga 8428454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 675
Target Start/End: Complemental strand, 35565939 - 35565857
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttta 675  Q
    ||||||||||  |||||| |||||||||||||||||||   | ||||||| |||||||| ||||| ||||||||||||| |||||||    
T  35565939 agtcatttatgactatatacaatttataacatatattt---agtattttt-ttttggtaaaatccatcgattttgattgtgatttta 35565857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 21869915 - 21869875
Alignment:
Q  320 tttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    |||| ||||||||||||| ||||||||| ||||||||||||    
T  21869915 ttttggcgactttgcgtagcttcaacgattcaaatccatag 21869875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 2e-88; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 449 - 678
Target Start/End: Original strand, 22970796 - 22971028
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 548  Q
    |||| ||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    || |||||||||||    
T  22970796 ataagggtcaatttttgacctggttcgtaaattgacccgatttaaatccatgacccgttctataaatacccaaaaggccaaaaaaattcattctttcact 22970895  T
Q  549 tcccccacatttatgtatatgtattttgtggactttgaactttagtca-tttat--ctatatgcaatttataacatatatttaaaattatttttgttttg 645  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||| ||| |||||||||||||||    
T  22970896 tcccccacatttatgtatatgtattttgtggactttgaactttagtcattttatgactatatgcaatttataacatatatataacattatttttgttttg 22970995  T
Q  646 gtagaatcctcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||||||| |||||||||    
T  22970996 gtagaatcctcgattttgattgcaattttacga 22971028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 449 - 678
Target Start/End: Original strand, 18013981 - 18014210
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 548  Q
    |||||||||||||| |||||| ||| ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||  |||| ||||||||| |    
T  18013981 ataaaggtcaatttatgaccccgtttgtaaattgacctgatttaaatccatgacccattctataaatacccaaaaggccaaaaattttcattctttcaat 18014080  T
Q  549 tcccccacatttatgtatatgtattttgtggactttgaactttagtcatttatctatatgcaatttataacatatatttaaaattatttttgttttggta 648  Q
    || |||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||  ||||||||||||||| ||    
T  18014081 tctcccatatttatgtatatgtattttgtggactttgaactttagtcatttatgactatgcaatttataacatatatttagcattatttttgttttgata 18014180  T
Q  649 gaatcctcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||||||||||||||    
T  18014181 gaatcctcgattttgattgcgattttacga 18014210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 449 - 678
Target Start/End: Original strand, 19348542 - 19348772
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 548  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||  ||  ||||| ||||||||| |    
T  19348542 ataaaggtcaatttt-gacccggtttgtaaattgacccgatttgaatccatgacccattctataaatacccaaaaggaaaacatttttcattctttcaat 19348640  T
Q  549 tcccccacatttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttgg 646  Q
    || |||||||||||||||||||||| ||||||||||||| | |||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||    
T  19348641 tctcccacatttatgtatatgtattatgtggactttgaattatagtcatttatgactatatgcaatttataacatatatttaacattatttttgttttgg 19348740  T
Q  647 tagaatcctcgattttgattgcgattttacga 678  Q
    || |||||||||||||||||||||||||||||    
T  19348741 tataatcctcgattttgattgcgattttacga 19348772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 565 - 678
Target Start/End: Complemental strand, 8592425 - 8592309
Alignment:
Q  565 atatgtattttgtggactttgaacttta-gtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattt 661  Q
    ||||||||||||||||||| |||||||| |||||||||  |||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||    
T  8592425 atatgtattttgtggacttcgaactttaagtcatttatgactatatgcaatttataacatatatttatcattatttttgttttggtagaatccttgattt 8592326  T
Q  662 tgattgcgattttacga 678  Q
    |||||||||||||||||    
T  8592325 tgattgcgattttacga 8592309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 567 - 677
Target Start/End: Original strand, 9169780 - 9169891
Alignment:
Q  567 atgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttga 664  Q
    |||||||||||| ||||||||||||| ||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9169780 atgtattttgtgaactttgaacttta-tcatttatgactatatgcaatttataacatatatttaacattatttttgttttggtagaatcctcgattttga 9169878  T
Q  665 ttgcgattttacg 677  Q
    |||| ||||||||    
T  9169879 ttgcaattttacg 9169891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 456 - 557
Target Start/End: Complemental strand, 8566558 - 8566456
Alignment:
Q  456 tcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcacttccccc 554  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||    
T  8566558 tcaatttttgatccggttcgtaaattgacccgatttgaatccatgacccggttctataaatactcaaaaggccaaaatttttcattctttcacttccccc 8566459  T
Q  555 aca 557  Q
    |||    
T  8566458 aca 8566456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 449 - 562
Target Start/End: Original strand, 3041267 - 3041380
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 548  Q
    |||| ||||||||||||||  |||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||    || | |||||||||    
T  3041267 ataagggtcaatttttgactaggttcgtaaattgatccgatttgaatccatgactcgttctataaatacccaaaaggccaaaaaaattcactctttcact 3041366  T
Q  549 tcccccacatttat 562  Q
    ||||||||||||||    
T  3041367 tcccccacatttat 3041380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 449 - 557
Target Start/End: Complemental strand, 21554220 - 21554111
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccg-ttctataaatacccaaaaggccaaacttttttattctttcac 547  Q
    |||| |||||||||||||||| ||||||||||||| | ||||||||||||||||| | |||||||||||||||||| ||||||   ||| ||||||||||    
T  21554220 ataagggtcaatttttgacccagttcgtaaattgatctgatttgaatccatgacctgattctataaatacccaaaatgccaaaaaatttcattctttcac 21554121  T
Q  548 ttcccccaca 557  Q
    ||||||||||    
T  21554120 ttcccccaca 21554111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 603 - 678
Target Start/End: Complemental strand, 21553881 - 21553802
Alignment:
Q  603 tatatgcaatttataacatatattta----aaattatttttgttttggtagaatcctcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||||||||||    | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21553881 tatatgcaatttataacatatatttagtcaacattatttttgttttggtagaatcctcgattttgattgcgattttacga 21553802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 603 - 675
Target Start/End: Original strand, 10591789 - 10591861
Alignment:
Q  603 tatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgatttta 675  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||||    
T  10591789 tatatgcaatttataacatatatttagcattatttttgttttggtagaatcctcaattttgattgcaatttta 10591861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 611 - 678
Target Start/End: Original strand, 3041375 - 3041442
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgattttacga 678  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  3041375 atttatagcatatatttaacattatttttgttttggtagaatcctcgattttaattgcgattttacga 3041442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 556 - 621
Target Start/End: Complemental strand, 8566247 - 8566180
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacat 621  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  8566247 catttatgtatatgtattttgtggacttcgaactttagtcatttatgactatatgcaatttataacat 8566180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 278 - 360
Target Start/End: Original strand, 18013811 - 18013893
Alignment:
Q  278 accattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    |||||||||||||||||  ||||||||| |  ||||||||| |||||||||||||||||| ||||||| ||||||||||||||    
T  18013811 accattgttataaaaaacgcgacttaaggcccaaaatcctggtttttgcgactttgcgtagcttcaactactcaaatccatag 18013893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 452 - 551
Target Start/End: Complemental strand, 20767418 - 20767317
Alignment:
Q  452 aaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacc-cgttctataaatacccaaaaggccaaactttttt-attctttcactt 549  Q
    ||||||||||||| ||| ||||| |||||| ||| |||||||||||||||||  |||||||||||| ||||||||||||  |||||| ||||||||||||    
T  20767418 aaggtcaattttttaccaggttcataaattaacccgatttgaatccatgacctagttctataaataaccaaaaggccaattttttttcattctttcactt 20767319  T
Q  550 cc 551  Q
    ||    
T  20767318 cc 20767317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 607 - 678
Target Start/End: Complemental strand, 8560437 - 8560367
Alignment:
Q  607 tgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||||||  ||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  8560437 tgcaatttataacatatatttagcattatttta-ttttggtagaatcatcgattttgattgcgattttacga 8560367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 278 - 360
Target Start/End: Original strand, 19348371 - 19348453
Alignment:
Q  278 accattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    ||||||||||| |||||  |||||||||||  ||||||||| ||||||||| |||| ||| ||||||||||||||||||||||    
T  19348371 accattgttatcaaaaacgcgacttaagtcccaaaatcctggtttttgcgattttgtgtagcttcaacgactcaaatccatag 19348453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 678
Target Start/End: Original strand, 27676545 - 27676668
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    |||||||||||| |||||||||||| ||| |||   ||||||||||  ||||||  |||||||||||||||||||| ||| |||||||||||||| ||||    
T  27676545 catttatgtataagtattttgtgga-tttaaaccg-agtcatttatgactatatataatttataacatatatttaacattgtttttgttttggtaaaatc 27676642  T
Q  654 c-tcgattttgattgcgattttacga 678  Q
    | | ||||||||||| ||||||||||    
T  27676643 cattgattttgattgtgattttacga 27676668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 609 - 675
Target Start/End: Complemental strand, 6861106 - 6861039
Alignment:
Q  609 caatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttta 675  Q
    |||||||||||||||| |||   ||||||||||||||||||||||| |||||||||||||||||||||    
T  6861106 caatttataacatatagttagctttatttttgttttggtagaatccatcgattttgattgcgatttta 6861039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 281 - 360
Target Start/End: Complemental strand, 21554389 - 21554309
Alignment:
Q  281 attgttataaaaaa-tccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    |||||||||||||| | ||| |||||||  |||||   |||||||||||||||||||| ||||||||||||||||||||||    
T  21554389 attgttataaaaaaatgcgatttaagtcccaaaatttagatttttgcgactttgcgtagcttcaacgactcaaatccatag 21554309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 360
Target Start/End: Original strand, 3041091 - 3041169
Alignment:
Q  278 accattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    ||||||||||| ||||| ||||||||||||     |||||| |||||||||||||| ||| |||||| |||||||||||||||    
T  3041091 accattgttatcaaaaacccgacttaagtct----atcctggtttttgcgactttgtgtagcttcaatgactcaaatccatag 3041169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 609 - 654
Target Start/End: Complemental strand, 15806350 - 15806305
Alignment:
Q  609 caatttataacatatatttaaaattatttttgttttggtagaatcc 654  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  15806350 caatttataacatatatttagcattatttttgttttggtagaatcc 15806305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 616 - 678
Target Start/End: Complemental strand, 6136529 - 6136466
Alignment:
Q  616 taacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 678  Q
    ||||||||| |||  |||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  6136529 taacatatagttagtattatttttgttttggtaaaatccatcgattttgattgtgattttacga 6136466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 605 - 667
Target Start/End: Original strand, 23649385 - 23649448
Alignment:
Q  605 tatgcaatttataacatatatttaaaattatttttgttttggt-agaatcctcgattttgattg 667  Q
    ||||||||||||||||||||||||| |||||||||| |||||| | | || |||||||||||||    
T  23649385 tatgcaatttataacatatatttaacattatttttgctttggtgaaactcatcgattttgattg 23649448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 22970651 - 22970697
Alignment:
Q  314 tcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    ||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  22970651 tcctggtttttgcgactttgcgtagcttcaacgattcaaatccatag 22970697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 611 - 676
Target Start/End: Complemental strand, 25870286 - 25870221
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||||||||||  |||||| || |||||||| ||||| ||||||||||||||||||||||    
T  25870286 atttataacatatatttagtattattgtt-ttttggtaaaatccatcgattttgattgcgattttac 25870221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 676
Target Start/End: Original strand, 28745920 - 28746006
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||  |||||| | ||||||||||||||||||  |||| |||| ||| |||| ||||| ||||||||||||||||||||||    
T  28745920 agtcatttatgactatatactatttataacatatatttactattaatttt-tttgggtaaaatccatcgattttgattgcgattttac 28746006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 613 - 676
Target Start/End: Original strand, 39428069 - 39428133
Alignment:
Q  613 ttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||||||||  |||| |||| ||| |||| ||||| ||||||||||||||||||||||    
T  39428069 ttataacatatatttagtattaattttttttgggtaaaatccatcgattttgattgcgattttac 39428133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 676
Target Start/End: Complemental strand, 8156103 - 8156028
Alignment:
Q  602 ctatatgcaatttataacatatatttaaaattatttttgtttt-ggtagaatcctcgattttgattgcgattttac 676  Q
    |||||| | ||||||||||||||||||  |||||| || |||| |||| ||||| |||| ||||||||||||||||    
T  8156103 ctatataccatttataacatatatttagtattattattatttttggtaaaatccacgatattgattgcgattttac 8156028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 678
Target Start/End: Original strand, 13286113 - 13286176
Alignment:
Q  616 taacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 678  Q
    ||||||||| |||  |||||||||||||||||| ||||| |||||||| |||| ||||||||||    
T  13286113 taacatatagttagtattatttttgttttggtaaaatccatcgattttcattgtgattttacga 13286176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 678
Target Start/End: Original strand, 27090633 - 27090668
Alignment:
Q  643 ttggtagaatcctcgattttgattgcgattttacga 678  Q
    |||||||||| |||||||||||||||||||||||||    
T  27090633 ttggtagaattctcgattttgattgcgattttacga 27090668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 609 - 648
Target Start/End: Original strand, 28135924 - 28135963
Alignment:
Q  609 caatttataacatatatttaaaattatttttgttttggta 648  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  28135924 caatttataacatatgtttaacattatttttgttttggta 28135963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 675
Target Start/End: Original strand, 42696991 - 42697077
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttta 675  Q
    ||||||||||  |||||| | |||||||||||||||||   ||| ||||| |||||||| ||||| |||||||||||||||| ||||    
T  42696991 agtcatttatgactatataccatttataacatatatttggtatttttttttttttggtaaaatccatcgattttgattgcgagttta 42697077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 676
Target Start/End: Original strand, 20756187 - 20756252
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||||||||||  ||||||| | ||| |||| ||||| ||||||||||||||||||||||    
T  20756187 atttataacatatatttagtattatttct-tttgggtaaaatccatcgattttgattgcgattttac 20756252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 603 - 643
Target Start/End: Original strand, 27055266 - 27055306
Alignment:
Q  603 tatatgcaatttataacatatatttaaaattatttttgttt 643  Q
    ||||||||||||| ||||||||||||  |||||||||||||    
T  27055266 tatatgcaatttacaacatatatttagcattatttttgttt 27055306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 159; Significance: 3e-84; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 449 - 676
Target Start/End: Original strand, 16752012 - 16752240
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 548  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||    
T  16752012 ataagggtcaatttttgacccggttcgtaaattgaccagatttgaatccatgacccgttctataaatacccaagaggccaaaatttttcattccttcact 16752111  T
Q  549 tcccccacatttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttgg 646  Q
    ||||||| ||||||||||||||||||| || ||||||||||||| ||||||||  |||||||||||||||||||||||||||| |||||||||||||| |    
T  16752112 tccccca-atttatgtatatgtattttatgaactttgaactttactcatttatgactatatgcaatttataacatatatttaacattatttttgttttag 16752210  T
Q  647 tagaatcctcgattttgattgcgattttac 676  Q
    ||| ||||||||||||||||||||| ||||    
T  16752211 tagtatcctcgattttgattgcgatgttac 16752240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 556 - 678
Target Start/End: Complemental strand, 40541855 - 40541730
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattattttt-gttttggtagaat 652  Q
    |||||||||||| |||||||||| || |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  40541855 catttatgtatacgtattttgtgtaccttgaactttagtcatttatgactatatgcaatttataacatatatttaacattattttttgttttggttgaat 40541756  T
Q  653 cctcgattttgattgcgattttacga 678  Q
    ||| ||||||||||||||||||||||    
T  40541755 ccttgattttgattgcgattttacga 40541730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 613 - 678
Target Start/End: Original strand, 2040273 - 2040338
Alignment:
Q  613 ttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgattttacga 678  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2040273 ttataacatatatttaacattatttttgttttggtagaatcctcgattttgattgcgattttacga 2040338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 449 - 530
Target Start/End: Original strand, 2040178 - 2040261
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatcc--atgacccgttctataaatacccaaaaggccaaa 530  Q
    |||| ||||||||||| |||||||||||||||||||| |||||||||||  ||||| |||||||||||||||||||||||||||    
T  2040178 ataagggtcaatttttcacccggttcgtaaattgacctgatttgaatccatatgactcgttctataaatacccaaaaggccaaa 2040261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 556 - 678
Target Start/End: Complemental strand, 26575146 - 26575020
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 652  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||||   ||||| ||||||| ||||||| ||||  || | |||||||||||||||||    
T  26575146 catttatgtataagtattttgtggactttaaactttgagtcatttatgattatattcaatttaaaacatatttttagcatcaattttgttttggtagaat 26575047  T
Q  653 cc-tcgattttgattgcgattttacga 678  Q
    || |||||||||||||| |||||||||    
T  26575046 ccatcgattttgattgctattttacga 26575020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 601 - 676
Target Start/End: Complemental strand, 15761333 - 15761257
Alignment:
Q  601 tctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  15761333 tctatatacaatttataacatatatttagcattatttttgttttggtaaaatccatcgattttgattgcgattttac 15761257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 2039989 - 2040069
Alignment:
Q  280 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    ||||||||| ||||| ||||||||||||  |||||||||||||| ||||| ||| ||| ||||||||||||||||||||||    
T  2039989 cattgttatcaaaaacccgacttaagtctcaaaatcctgattttggcgacattgtgtagcttcaacgactcaaatccatag 2040069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 16751830 - 16751904
Alignment:
Q  280 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaat 354  Q
    |||||||||||||||||| |||||||||  ||||||||  ||||||||||| |||| | ||||||||||||||||    
T  16751830 cattgttataaaaaatccaacttaagtctcaaaatcctagtttttgcgactatgcgaagcttcaacgactcaaat 16751904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 611 - 678
Target Start/End: Complemental strand, 30240335 - 30240267
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 678  Q
    |||||| | |||||||||  |||||||||||||||||||||||| || |||||||||||||||||||||    
T  30240335 atttatgatatatatttagtattatttttgttttggtagaatccatcaattttgattgcgattttacga 30240267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 559 - 674
Target Start/End: Complemental strand, 1018199 - 1018082
Alignment:
Q  559 ttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc-ct 655  Q
    ||||||||| ||||||||| |||||| || |   |||||||||  ||||||  ||||||||||||| |||||| ||||||||| |||||||||||||  |    
T  1018199 ttatgtataagtattttgttgactttaaagtgg-gtcatttatgactatatataatttataacatacatttaacattatttttattttggtagaatctat 1018101  T
Q  656 cgattttgattgcgatttt 674  Q
    |||||||||||||| ||||    
T  1018100 cgattttgattgcgctttt 1018082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 358
Target Start/End: Complemental strand, 40542294 - 40542214
Alignment:
Q  279 ccattgttataaaaaatc-cgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccat 358  Q
    |||||||||||||||| | | |||||||||  |||||  || |||||||||||||| ||| ||||||||||||||||||||    
T  40542294 ccattgttataaaaaaacgcaacttaagtcccaaaattttggtttttgcgactttgtgtagcttcaacgactcaaatccat 40542214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 487 - 557
Target Start/End: Complemental strand, 40542120 - 40542049
Alignment:
Q  487 gatttgaatccatgacccg-ttctataaatacccaaaaggccaaacttttttattctttcacttcccccaca 557  Q
    ||||||||||||||||||| ||||||||||||||||||| | |||  |||  ||||||||||||| ||||||    
T  40542120 gatttgaatccatgacccggttctataaatacccaaaagacaaaaaatttccattctttcacttcgcccaca 40542049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 609 - 678
Target Start/End: Original strand, 8582205 - 8582275
Alignment:
Q  609 caatttataacatatatttaaaattatttttgttttggtagaa-tcctcgattttgattgcgattttacga 678  Q
    |||| |||||||||||||||| ||||||| |||||||||| || || |||||||||||||  |||||||||    
T  8582205 caatgtataacatatatttaacattatttatgttttggtaaaattcatcgattttgattgtaattttacga 8582275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 678
Target Start/End: Original strand, 26879737 - 26879807
Alignment:
Q  610 aatttataacatatatttaaaattattttt-gttttggtagaatcc-tcgattttgattgcgattttacga 678  Q
    |||||||||||||||||||  || |||||| ||||| ||||||||| || |||||||||||||||||||||    
T  26879737 aatttataacatatatttagcatgattttttgtttttgtagaatccatcaattttgattgcgattttacga 26879807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 611 - 674
Target Start/End: Original strand, 6810986 - 6811048
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttt 674  Q
    ||||||||||||||||||  ||||||||  |||||||| ||||| ||||||||||||||||||||    
T  6810986 atttataacatatatttagtattatttt--ttttggtaaaatccatcgattttgattgcgatttt 6811048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 678
Target Start/End: Complemental strand, 29384290 - 29384209
Alignment:
Q  602 ctatatgcaatttataacatatatttaaaatta----tttttgttttggtagaatcc-tcgattttgattgcgattttacga 678  Q
    |||||| | ||||||||||||||||||  ||||    ||||| |||||||| ||||| ||||||||||||||||||||||||    
T  29384290 ctatataccatttataacatatatttagtattagtatttttttttttggtaaaatccatcgattttgattgcgattttacga 29384209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 676
Target Start/End: Original strand, 11879756 - 11879830
Alignment:
Q  602 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    |||||| | ||||||||||||||||||  |||||| || |||||||| ||||| |||||||||| |||||||||||    
T  11879756 ctatataccatttataacatatatttagtattattatt-ttttggtaaaatccatcgattttgaatgcgattttac 11879830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 676
Target Start/End: Original strand, 11897172 - 11897246
Alignment:
Q  602 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    |||||| | ||||||||||||||||||  |||||| || |||||||| ||||| |||||||||| |||||||||||    
T  11897172 ctatataccatttataacatatatttagtattattatt-ttttggtaaaatccatcgattttgaatgcgattttac 11897246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 669
Target Start/End: Original strand, 45403194 - 45403253
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatc-ctcgattttgattgcg 669  Q
    ||||||||||||||||||| |||||| || |||||||| ||||  |||||||||||||||    
T  45403194 atttataacatatatttaatattattatttttttggtaaaatctatcgattttgattgcg 45403253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 676
Target Start/End: Original strand, 23142319 - 23142404
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||  |||||| | ||||||||||||||||||  |||||| ||  ||||||| | ||| ||||||||||||||||||||||    
T  23142319 agtcatttatgactatataccatttataacatatatttagtattattatt--tttggtaaagtccatcgattttgattgcgattttac 23142404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 499 - 678
Target Start/End: Complemental strand, 133206 - 133025
Alignment:
Q  499 tgacccgttctataaatacccaaaaggccaaacttttttattctttcacttcccccacatttatgtatatgtattttgtggactttgaactttagtcatt 598  Q
    |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  133206 tgacccgttctataaatacccaaaaggccaaattttttcattccttcacttcccccacatttatgtatatgtattttgtggactttgaactttggtcatt 133107  T
Q  599 tat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgattttacga 678  Q
    |||  |||||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  133106 tatgactatatgcaatttataacatatatttaacattaattttgttttagtagaatccttgattttgattgcgattttacga 133025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 133388 - 133313
Alignment:
Q  280 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatc 355  Q
    ||||||||| ||||| |||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||||    
T  133388 cattgttatcaaaaacccgacttaagtcttaaaatcctggtttttacgactttgcgtagcttcaacgactcaaatc 133313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 449 - 675
Target Start/End: Original strand, 24370 - 24602
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaaggccaaacttttttattctttcact 548  Q
    |||| ||| ||||||| ||||||||| |||||||||| | ||||||||||||||||||||||||||||| | ||||||||||   ||| |||| ||||||    
T  24370 ataagggttaattttttacccggttcataaattgacccgctttgaatccatgacccgttctataaatactcgaaaggccaaaaaatttcattccttcact 24469  T
Q  549 tcccccacatttatgtatatgtattttgtggactttgaactttagtcat------ttatctatatgcaatttataacatatatttaaaattatttttgtt 642  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||      |||  ||||||||||||||||||||||||||| ||||||||| ||    
T  24470 tcccccacatttatgtatatgtattttgtggactttgaacttcagtcatttaatgttaaatatatgcaatttataacatatatttaacattatttttttt 24569  T
Q  643 ttggtagaatcctcgattttgattgcgatttta 675  Q
    ||||||||||| |||||||||||||||||||||    
T  24570 ttggtagaatcttcgattttgattgcgatttta 24602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 279 - 360
Target Start/End: Original strand, 24190 - 24271
Alignment:
Q  279 ccattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    |||||||||| |||||  |||||||||||  ||||||||| || |||||||||||||||||||||| |||||||||||||||    
T  24190 ccattgttatcaaaaacacgacttaagtctcaaaatcctggttcttgcgactttgcgtaacttcaatgactcaaatccatag 24271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 6e-48; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 556 - 678
Target Start/End: Original strand, 55476083 - 55476207
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  55476083 catttatgtatatgtattttgtgtactttgaactttagtcatttatgactatatgcaatttataacatatattttgcattatttttgttttggtagaatc 55476182  T
Q  654 ctcgattttgattgcgattttacga 678  Q
    |||||||||||||||||||||||||    
T  55476183 ctcgattttgattgcgattttacga 55476207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 559 - 675
Target Start/End: Original strand, 18403639 - 18403757
Alignment:
Q  559 ttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctc 656  Q
    |||||||||| |||||||||||||||||| || ||||||| ||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  18403639 ttatgtatatttattttgtggactttgaatttgagtcattcatgactatatacaatttataacatatatttaacattatttttgttttggtagaatcttc 18403738  T
Q  657 gattttgattgcgatttta 675  Q
    |||||||||||||||||||    
T  18403739 gattttgattgcgatttta 18403757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 449 - 554
Target Start/End: Original strand, 8409349 - 8409455
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcac 547  Q
    |||| ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||| ||||||||||   |||  |||||||||    
T  8409349 ataagggtcaatttttgacccggttcgtaaattgacccaatttgaatccatgacccggttctataaataccctaaaggccaaaaaatttccttctttcac 8409448  T
Q  548 ttccccc 554  Q
    |||||||    
T  8409449 ttccccc 8409455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 592 - 675
Target Start/End: Original strand, 8409725 - 8409810
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgatttta 675  Q
    ||||||||||  ||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||    
T  8409725 agtcatttatgactatatgtaatttataacatatatttagcattatttttgttttggtagaatcctcgattttgattacgatttta 8409810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 556 - 676
Target Start/End: Complemental strand, 8011157 - 8011035
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttatc--tatatgcaatttataacatatatttaaaattatttttgttttggtagaat- 652  Q
    |||||||||||| |||||||||||||||| ||||  | ||||||||   ||||| ||||||||||||||||||||  |||||||||||||||||| |||     
T  8011157 catttatgtataagtattttgtggactttaaacta-attcatttataattatatacaatttataacatatatttagcattatttttgttttggtaaaata 8011059  T
Q  653 cctcgattttgattgcgattttac 676  Q
    | ||||||||||||||||||||||    
T  8011058 catcgattttgattgcgattttac 8011035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 602 - 663
Target Start/End: Complemental strand, 8020775 - 8020714
Alignment:
Q  602 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttg 663  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  8020775 ctatatgcaatttataacatatatttaacattatttttgttttggtagaatcctcaattttg 8020714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 602 - 678
Target Start/End: Original strand, 24719730 - 24719807
Alignment:
Q  602 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaa-tcctcgattttgattgcgattttacga 678  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||||| || || ||||||||||||||||||||||||    
T  24719730 ctatatacaatttataacatatatttaacattatttttgctttggtaaaactcatcgattttgattgcgattttacga 24719807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 281 - 360
Target Start/End: Original strand, 55475585 - 55475664
Alignment:
Q  281 attgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    |||||||| |||||  ||||||||||  |||||||||||||||||||||||||||||| || ||||||| ||||||||||    
T  55475585 attgttatcaaaaacgcgacttaagttctaaaatcctgatttttgcgactttgcgtaattttaacgacttaaatccatag 55475664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 678
Target Start/End: Original strand, 4156961 - 4157084
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    |||||||||||| |||||||||| ||||| |||   | ||||||||  |||||| ||| |||||||||||||| || |||||||||||||| ||| ||||    
T  4156961 catttatgtataagtattttgtgaactttaaac-cgaatcatttatcactatatacaa-ttataacatatattcaacattatttttgttttagtaaaatc 4157058  T
Q  654 c-tcgattttgattgcgattttacga 678  Q
    | ||||||||||||||||||||||||    
T  4157059 catcgattttgattgcgattttacga 4157084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 603 - 676
Target Start/End: Complemental strand, 6346928 - 6346854
Alignment:
Q  603 tatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||  ||||| ||||||||||||||||||||||    
T  6346928 tatatacaatttataacatatatttatcattatttttgttttggtgaaatccatcgattttgattgcgattttac 6346854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 678
Target Start/End: Original strand, 7044871 - 7044995
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttatc--tatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    |||||||||||| |||| |||| |||||| ||||  |||||||||||  ||||| ||| |||||||| || ||||| |||||||||||||||||| ||||    
T  7044871 catttatgtataagtatcttgtcgactttaaactg-agtcatttatcactatatacaaattataacacatgtttaacattatttttgttttggtaaaatc 7044969  T
Q  654 c-tcgattttgattgcgattttacga 678  Q
    | |||||||||||||  |||||||||    
T  7044970 catcgattttgattgatattttacga 7044995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 556 - 674
Target Start/End: Complemental strand, 9149744 - 9149624
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    |||||||||||| ||||||| |||||||| | ||  ||||||||||  |||||| ||||||||||||||||||||  ||||||||| |||||||| ||||    
T  9149744 catttatgtataagtattttttggactttaagctg-agtcatttataactatatacaatttataacatatatttagcattatttttcttttggtaaaatc 9149646  T
Q  654 -ctcgattttgattgcgatttt 674  Q
      || |||||||||||| ||||    
T  9149645 tatcaattttgattgcgttttt 9149624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 8409179 - 8409259
Alignment:
Q  280 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    |||||||||||||||  ||||||||||   ||||||| | ||||||| |||||||||| |||||| |||||||||||||||    
T  8409179 cattgttataaaaaacgcgacttaagtaccaaaatccaggtttttgcaactttgcgtagcttcaaagactcaaatccatag 8409259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 603 - 676
Target Start/End: Original strand, 8367344 - 8367419
Alignment:
Q  603 tatatgcaattt-ataacatatatttaaaattatttt-tgttttggtagaatcctcgattttgattgcgattttac 676  Q
    |||||| ||||| ||||||||||||||  |||||||| |||||||||||||||||||||||| ||||| |||||||    
T  8367344 tatatgaaatttcataacatatatttagcattattttttgttttggtagaatcctcgattttaattgcaattttac 8367419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 678
Target Start/End: Original strand, 7045085 - 7045174
Alignment:
Q  592 agtcatttatc--tatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 678  Q
    |||||||||||  ||||| ||| ||||||||||||||||| ||||||||||||||||||  |||| | |||||||||||  |||||||||    
T  7045085 agtcatttatcactatatacaaattataacatatatttaacattatttttgttttggtaagatccatagattttgattgatattttacga 7045174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 556 - 645
Target Start/End: Complemental strand, 8743800 - 8743708
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttt-agtcatttatctatatg--caatttataacatatatttaaaattatttttgttttg 645  Q
    |||||||||| | ||||||||| |||||| |||||| ||||||||||   ||||  ||||||| ||||||||||||| |||||||||||||||    
T  8743800 catttatgtacaagtattttgtagactttaaactttgagtcatttatgactatgaacaatttaaaacatatatttaacattatttttgttttg 8743708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 556 - 675
Target Start/End: Original strand, 20812635 - 20812759
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacat--atatttaaaattatttttgttttggtaga 650  Q
    ||||||| |||| ||||||||| |||||  |||||| ||||||||||  ||||||||| ||||||| ||  |||||||  ||||||||  ||||||||||    
T  20812635 catttatttataagtattttgtagacttgaaactttgagtcatttatgactatatgcactttataatatttatatttagcattattttc-ttttggtaga 20812733  T
Q  651 atcct-cgattttgattgcgatttta 675  Q
    ||||| |||| |||||||||||||||    
T  20812734 atccttcgatcttgattgcgatttta 20812759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 604 - 648
Target Start/End: Original strand, 10394768 - 10394812
Alignment:
Q  604 atatgcaatttataacatatatttaaaattatttttgttttggta 648  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||    
T  10394768 atatacaatttataacatatatttaccattatttttgttttggta 10394812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 676
Target Start/End: Original strand, 17466223 - 17466309
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||  |||||| | ||||||||||||||||||| ||||||||| || | ||| ||||| |||||||||||||| |||||||    
T  17466223 agtcatttatgactatataccatttataacatatatttaatattattttt-ttgttgtaaaatccatcgattttgattgcaattttac 17466309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 628
Target Start/End: Original strand, 7825158 - 7825231
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatattta 628  Q
    |||||||||||| |||||||||||||||| ||| | ||||||||||  |||||| ||||||||||| | ||||||    
T  7825158 catttatgtataagtattttgtggactttaaac-tgagtcatttatgactatatacaatttataacttgtattta 7825231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 676
Target Start/End: Original strand, 5375829 - 5375895
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||||||||||  |||| |||| ||| |||| ||||| ||||||||||||| ||||||||    
T  5375829 atttataacatatatttagtattaattttttttgggtaaaatccatcgattttgattgtgattttac 5375895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 674
Target Start/End: Complemental strand, 46664269 - 46664210
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgatttt 674  Q
    |||||||| |||||||||  ||||||||||||||||| ||||    ||||||||||||||||||    
T  46664269 atttataatatatatttagcattatttttgttttggtggaat----gattttgattgcgatttt 46664210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 646
Target Start/End: Complemental strand, 18459637 - 18459546
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttgg 646  Q
    |||||||||||| |||||||||||||||| |||   ||||||||||  |||||| || || ||||||||||||||   ||| |||||||||||    
T  18459637 catttatgtataagtattttgtggactttaaac-cgagtcatttatgactatatacagttcataacatatatttagcgttacttttgttttgg 18459546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 676
Target Start/End: Original strand, 36120968 - 36121053
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||  |||||| | |||||||| |||||||||  |||||| ||  ||||||| ||||| ||||||||||||||||||||||    
T  36120968 agtcatttatgactatataccatttataaaatatatttagtattattatt--tttggtaaaatccatcgattttgattgcgattttac 36121053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 604 - 644
Target Start/End: Complemental strand, 5846090 - 5846050
Alignment:
Q  604 atatgcaatttataacatatatttaaaattatttttgtttt 644  Q
    |||| ||||||||||||||||||||  ||||||||||||||    
T  5846090 atatacaatttataacatatatttagcattatttttgtttt 5846050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 604 - 675
Target Start/End: Complemental strand, 5884265 - 5884193
Alignment:
Q  604 atatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgatttta 675  Q
    |||||||||||||||||||  ||||  |||| ||||||||| ||| ||||| || |||||||||| |||||||    
T  5884265 atatgcaatttataacatacttttagcattacttttgtttttgtaaaatccatctattttgattgtgatttta 5884193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 592 - 676
Target Start/End: Complemental strand, 9911396 - 9911310
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||  |||||| | |||||||||||||||| |  |||||| || |||||||| | ||| ||||||||||||||||||||||    
T  9911396 agtcatttatgactatataccatttataacatatattaagtattattatt-ttttggtaaagtccatcgattttgattgcgattttac 9911310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 613 - 676
Target Start/End: Original strand, 10143066 - 10143130
Alignment:
Q  613 ttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    |||||| |||||||||  ||||||||| ||||| || ||||| || |||||||||||||||||||    
T  10143066 ttataatatatatttagtattattttttttttgataaaatccatcaattttgattgcgattttac 10143130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 602 - 654
Target Start/End: Original strand, 27527953 - 27528005
Alignment:
Q  602 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc 654  Q
    |||||||||||||| |||||||| |||  |||||||||  |||||||||||||    
T  27527953 ctatatgcaatttacaacatatagttagcattattttttatttggtagaatcc 27528005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 556 - 676
Target Start/End: Original strand, 41427513 - 41427636
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttta-gtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 652  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||| |||||||||  ||||||||||||||||||||||    
T  41427513 catttatgtatatgtattttgtggactttgaactttaagtcatttatgactatatgcaatttataatatatatttatcattatttttgttttggtagaat 41427612  T
Q  653 cctcgattttgattgcgattttac 676  Q
    |||||||||||||||| |||||||    
T  41427613 cctcgattttgattgcaattttac 41427636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 576 - 678
Target Start/End: Complemental strand, 15052101 - 15052001
Alignment:
Q  576 gtggactttgaactttagtcatttatctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgatttta 675  Q
    ||||| ||||||||||||||||    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15052101 gtggattttgaactttagtcatga--ctatatgcaatttataacatatatttaacattatttttgttttggtagaatcctcgattttgattgcgatttta 15052004  T
Q  676 cga 678  Q
    |||    
T  15052003 cga 15052001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 556 - 655
Target Start/End: Original strand, 19377707 - 19377809
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttta-gtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 652  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||  |||||| ||||||||||||||||||||| |||||||||||||| |||||||    
T  19377707 catttatgtatatgtattttgtggactttgaactttaagtcatttatgactatatccaatttataacatatatttaacattatttttgtttttgtagaat 19377806  T
Q  653 cct 655  Q
    |||    
T  19377807 cct 19377809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 556 - 651
Target Start/End: Complemental strand, 187906 - 187809
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaa 651  Q
    ||||||||||||| |||||||||||||| |||||||||| ||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  187906 catttatgtatatatattttgtggacttcgaactttagttatttattactatatgcaatttataacatatatttaacattatttttgttttggtagaa 187809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 556 - 678
Target Start/End: Complemental strand, 22984836 - 22984711
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 652  Q
    ||||||||||||||||||||||||| |||||||||| |||||| |||  |||||||||||||||||||||||||||  ||||||||  | ||||||||||    
T  22984836 catttatgtatatgtattttgtggaatttgaactttgagtcatctatgactatatgcaatttataacatatatttagcattattttactattggtagaat 22984737  T
Q  653 cctcgattttgattgcgattttacga 678  Q
    |||||||||||||||  |||||||||    
T  22984736 cctcgattttgattggaattttacga 22984711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 449 - 525
Target Start/End: Complemental strand, 15052177 - 15052101
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaatacccaaaagg 525  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  15052177 ataagggtcaatttttgacccggttcgtaaattgacctgatttgaatccatgacccgttctataaataaccaaaagg 15052101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 466 - 557
Target Start/End: Original strand, 41427311 - 41427403
Alignment:
Q  466 acccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcacttcccccaca 557  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||    
T  41427311 acccggttcgtaaattgacccgatttgaatccattacccagttctataaatacccaaaaggctaaattttttcattctttcacttcccccaca 41427403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 556 - 678
Target Start/End: Original strand, 15446305 - 15446431
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttt-agtcatttatc--tatatgcaatttataacatatatttaaaattatttttgttttggtagaat 652  Q
    |||||||||| | ||| |||||||||||| |||||| ||||||||||   | | ||||||| ||||||||||||||   |||||||||||||| ||||||    
T  15446305 catttatgtacaagtaatttgtggactttaaactttgagtcatttatgagtgtgtgcaattgataacatatatttatcgttatttttgttttgatagaat 15446404  T
Q  653 cc-tcgattttgattgcgattttacga 678  Q
    || ||||||||||||||||||||||||    
T  15446405 ccatcgattttgattgcgattttacga 15446431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 556 - 674
Target Start/End: Original strand, 24648125 - 24648245
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    |||||||||||| |||||||||||||||| || || ||||||||||  |||||| |||||||||| |||||||||  ||||||| |||||| ||| ||||    
T  24648125 catttatgtataagtattttgtggacttt-aaattgagtcatttatgactatatacaatttataatatatatttagcattatttatgttttagtaaaatc 24648223  T
Q  654 c-tcgattttgattgcgatttt 674  Q
    |  |||||||||||||||||||    
T  24648224 caccgattttgattgcgatttt 24648245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 449 - 551
Target Start/End: Original strand, 19377234 - 19377337
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatga-cccgttctataaatacccaaaaggccaaacttttttattctttcac 547  Q
    |||| |||||||||||||||| |||| | |||||||| |||||||| |||||| || ||||||||||||||||||||| ||||   ||| ||||||||||    
T  19377234 ataagggtcaatttttgacccagttcatcaattgacccgatttgaagccatgatccggttctataaatacccaaaaggtcaaaaaatttcattctttcac 19377333  T
Q  548 ttcc 551  Q
    ||||    
T  19377334 ttcc 19377337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 609 - 678
Target Start/End: Complemental strand, 43005826 - 43005756
Alignment:
Q  609 caatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  43005826 caatttataacatatatttagcattatttttgttttggtacaatccatcgattttaattgcgattttacga 43005756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 602 - 676
Target Start/End: Complemental strand, 9996957 - 9996882
Alignment:
Q  602 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||| ||||||||||||||||||| |  |||||||||||||||||| ||||| |||||||||||||  |||||||    
T  9996957 ctataagcaatttataacatatattaagcattatttttgttttggtaaaatccatcgattttgattgtaattttac 9996882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 41427100 - 41427163
Alignment:
Q  297 cgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    |||||| ||||  ||||||| | ||||||| |||||||||| ||||||||||||||||||||||    
T  41427100 cgacttcagtcccaaaatccaggtttttgcaactttgcgtagcttcaacgactcaaatccatag 41427163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 676
Target Start/End: Original strand, 19579111 - 19579173
Alignment:
Q  615 ataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    |||||||||||||   ||||||||| |||||||| ||||| ||||||||||||||||||||||    
T  19579111 ataacatatatttggtattattttttttttggtaaaatccatcgattttgattgcgattttac 19579173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 611 - 676
Target Start/End: Original strand, 20321107 - 20321173
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||||||||||| |||| |||| | | |||| ||||| ||||||||||||||||||||||    
T  20321107 atttataacatatatttaatattaattttttctgggtaaaatccatcgattttgattgcgattttac 20321173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 454 - 550
Target Start/End: Complemental strand, 22985024 - 22984928
Alignment:
Q  454 ggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcacttc 550  Q
    ||||||||||||| || ||| || || ||||| |||||| | ||||||||| |||||||||||| | ||||| ||||| ||||| |||||||||||||    
T  22985024 ggtcaatttttgatccagttagtcaaatgacccgatttgtacccatgacccggttctataaatatcaaaaagaccaaa-tttttcattctttcacttc 22984928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 4289827 - 4289886
Alignment:
Q  297 cgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatcc 356  Q
    |||||||||||  |||| || |||||||||||||||||||| ||||||| ||| ||||||    
T  4289827 cgacttaagtcccaaaacccagatttttgcgactttgcgtagcttcaacaacttaaatcc 4289886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 19377076 - 19377135
Alignment:
Q  301 ttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    ||||||| ||||||  || |||||||||||||| ||| ||||||||||||||||| ||||    
T  19377076 ttaagtcctaaaattttggtttttgcgactttgtgtagcttcaacgactcaaatctatag 19377135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 648
Target Start/End: Original strand, 26021464 - 26021522
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggta 648  Q
    ||||||||||  |||||| ||||||||||||||||||||  |||||| |||||||||||    
T  26021464 agtcatttatgactatatacaatttataacatatatttagcattattattgttttggta 26021522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 662
Target Start/End: Complemental strand, 13348874 - 13348812
Alignment:
Q  602 ctatatgcaatttataacatata-tttaaaattatttttgttttggtagaatcc-tcgatttt 662  Q
    ||||||||||||||||| ||||| ||||| ||||||||| ||||| |||||||| ||||||||    
T  13348874 ctatatgcaatttataatatatattttaacattatttttattttgatagaatccatcgatttt 13348812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 676
Target Start/End: Original strand, 18843880 - 18843945
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||||||||||  |||| |||| ||| |||| ||||| ||||||||||||||||||||||    
T  18843880 atttataacatatatttagtattaatttt-tttgggtaaaatccatcgattttgattgcgattttac 18843945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 592 - 676
Target Start/End: Complemental strand, 23172413 - 23172327
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||  |||||| | |||| |||||||||||||| |||| |||| ||| |||| ||| | ||||||||||||||||||||||    
T  23172413 agtcatttatgactatataccatttgtaacatatatttaatattaatttt-tttgggtaaaattcatcgattttgattgcgattttac 23172327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 602 - 676
Target Start/End: Complemental strand, 41688638 - 41688565
Alignment:
Q  602 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    |||||| | ||| ||||||||||||||  |||||||||  ||||||| ||| | ||||||||||||||||||||||    
T  41688638 ctatataccattcataacatatatttagtattattttt--tttggtaaaattcatcgattttgattgcgattttac 41688565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 6e-42; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 555 - 678
Target Start/End: Original strand, 27890479 - 27890605
Alignment:
Q  555 acatttatgtatatgtattttgtggactttgaactttag-tcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaa 651  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  27890479 acatttatatatatgtattttgtggactttgaactttaactcatttatgactatatgcaatttataacatatatttagcattatttttgttttggtagaa 27890578  T
Q  652 tcctcgattttgattgcgattttacga 678  Q
    | |||||||||||||||||||||||||    
T  27890579 ttctcgattttgattgcgattttacga 27890605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 557 - 678
Target Start/End: Original strand, 31108252 - 31108374
Alignment:
Q  557 atttatgtatatgtattttgtggactttgaacttta-gtcatttatctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcct 655  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||   ||||||||||||||||| ||||||   ||| |||||||||| |||||||||    
T  31108252 atttatgtatatgtattttgcggactttgaactttaagtcatttatgactatgcaatttataacatgtatttagctttacttttgttttgttagaatcct 31108351  T
Q  656 cgattttgattgcgattttacga 678  Q
    |||||||||||||||||||||||    
T  31108352 cgattttgattgcgattttacga 31108374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 449 - 557
Target Start/End: Original strand, 27890301 - 27890410
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcac 547  Q
    |||| ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||   ||| ||||||||||    
T  27890301 ataagggtcaatttttgacccggttcgtaaattgacccaatttgaatccatgacccggttctataaatacccaaaaggccaaaaactttcattctttcac 27890400  T
Q  548 ttcccccaca 557  Q
    ||||||||||    
T  27890401 ttcccccaca 27890410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 556 - 678
Target Start/End: Original strand, 31407402 - 31407528
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 652  Q
    |||||||||||| |||||||||||| ||| |||||| ||||||||||  | |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31407402 catttatgtataagtattttgtggaatttaaactttgagtcatttatgacaatatgcaatttataacatatatttaacattatttttgttttggtagaat 31407501  T
Q  653 -cctcgattttgattgcgattttacga 678  Q
     | |||| |||||||| ||||||||||    
T  31407502 gcgtcgactttgattgtgattttacga 31407528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 556 - 675
Target Start/End: Complemental strand, 33593186 - 33593063
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 652  Q
    |||||||||||| ||||||||| |||||  |||||| ||||| | ||  |||||||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  33593186 catttatgtataagtattttgtagacttgaaactttgagtcaataatgactatatgcaatttataacatatgtttaacattatttttcttttggtagaat 33593087  T
Q  653 cc-tcgattttgattgcgatttta 675  Q
    || |||||||||||||||||||||    
T  33593086 ccatcgattttgattgcgatttta 33593063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 556 - 678
Target Start/End: Complemental strand, 18490660 - 18490536
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttatc--tatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    |||||||||||||||||||||||||||||  |||  ||| ||||| |  ||||| | ||||||||||||||||||  |||||||||| ||||||||||||    
T  18490660 catttatgtatatgtattttgtggactttatactg-agttatttagcactatatacgatttataacatatatttatcattatttttgatttggtagaatc 18490562  T
Q  654 c-tcgattttgattgcgattttacga 678  Q
    | || |||||||||||||||||||||    
T  18490561 catcaattttgattgcgattttacga 18490536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 569 - 667
Target Start/End: Complemental strand, 20400096 - 20399994
Alignment:
Q  569 gtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttga 664  Q
    |||||||||||||||| ||| || ||| ||||||  |||||||||||||||||||||||||||  ||||||||||||||||| |||||| ||||||||||    
T  20400096 gtattttgtggactttaaacattgagttatttatgactatatgcaatttataacatatatttatcattatttttgttttggtggaatccatcgattttga 20399997  T
Q  665 ttg 667  Q
    |||    
T  20399996 ttg 20399994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 556 - 678
Target Start/End: Complemental strand, 20432628 - 20432503
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 652  Q
    |||||||||| | |||||||||||||||  || ||| ||| ||||||  ||||||||||||||||||||||| |||  ||||||||||||||||| ||||    
T  20432628 catttatgtaaaagtattttgtggacttaaaattttgagttatttatgactatatgcaatttataacatata-ttagtattatttttgttttggtggaat 20432530  T
Q  653 cc-tcgattttgattgcgattttacga 678  Q
    || |||||||||||||||| |||||||    
T  20432529 ccatcgattttgattgcgaatttacga 20432503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 556 - 674
Target Start/End: Complemental strand, 7622003 - 7621882
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttag--tcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaa 651  Q
    |||||||||||| ||||||| || ||||  |||||| |  ||||||||  ||||| ||||||||||| |||||||||  |||||||||||||||||||||    
T  7622003 catttatgtataagtattttatgaacttgaaacttttgaatcatttatgactataggcaatttataatatatatttatcattatttttgttttggtagaa 7621904  T
Q  652 tcctcgattttgattgcgatttt 674  Q
    | ||||| ||||||| |||||||    
T  7621903 t-ctcgagtttgattacgatttt 7621882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 570 - 676
Target Start/End: Complemental strand, 5422665 - 5422564
Alignment:
Q  570 tattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattg 667  Q
    ||||||||||||||| ||  || |||||||||  ||||||  |||||||||||||||||||  |||||||||||||||||| ||||     |||||||||    
T  5422665 tattttgtggactttaaa--ttggtcatttatgactatatataatttataacatatatttagcattatttttgttttggtaaaatc-----ttttgattg 5422573  T
Q  668 cgattttac 676  Q
    |||||||||    
T  5422572 cgattttac 5422564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 604 - 674
Target Start/End: Complemental strand, 8275503 - 8275434
Alignment:
Q  604 atatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattttgattgcgatttt 674  Q
    ||||||||||||||||||||||| |  ||||||||||||| ||||  ||||| ||||||||||||||||||    
T  8275503 atatgcaatttataacatatatt-agtattatttttgtttgggtattatccttgattttgattgcgatttt 8275434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 609 - 678
Target Start/End: Complemental strand, 4841796 - 4841726
Alignment:
Q  609 caatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 678  Q
    |||||||||||||||||||   ||  |||||||||||||| ||| | ||||||||||||||||||||||||    
T  4841796 caatttataacatatattttgcatattttttgttttggtaaaatacatcgattttgattgcgattttacga 4841726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 603 - 678
Target Start/End: Complemental strand, 4596843 - 4596764
Alignment:
Q  603 tatatgcaatttataacatatatttaaaattatttt---tgttttggtagaatcc-tcgattttgattgcgattttacga 678  Q
    ||||||||||| ||||||| ||||||  ||||||||   ||||||||||||||||  ||||||| |||||||||||||||    
T  4596843 tatatgcaattaataacatgtatttagcattatttttgctgttttggtagaatccaccgatttttattgcgattttacga 4596764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 676
Target Start/End: Original strand, 23897955 - 23898041
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||  |||||| | ||||||||||||||||||  ||| ||||| |||||||| ||||| ||||||||||||| ||||||||    
T  23897955 agtcatttatgactatataccatttataacatatatttagtatt-ttttttttttggtaaaatccatcgattttgattgagattttac 23898041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 27890143 - 27890211
Alignment:
Q  291 aaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccata 359  Q
    |||||| ||||||||||  ||||| | | |||||||||||||| ||| ||| |||||||||||||||||    
T  27890143 aaaatctgacttaagtcccaaaattcaggtttttgcgactttgtgtagctttaacgactcaaatccata 27890211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 676
Target Start/End: Complemental strand, 26053269 - 26053195
Alignment:
Q  602 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    |||||| | |||||||||||||| |||  |||||| || |||||||| ||||| ||||||||||||||||||||||    
T  26053269 ctatataccatttataacatatagttagtattattatt-ttttggtaaaatccatcgattttgattgcgattttac 26053195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 676
Target Start/End: Complemental strand, 26073322 - 26073248
Alignment:
Q  602 ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    |||||| | |||||||||||||| |||  |||||| || |||||||| ||||| ||||||||||||||||||||||    
T  26073322 ctatataccatttataacatatagttagtattattatt-ttttggtaaaatccatcgattttgattgcgattttac 26073248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 643
Target Start/End: Original strand, 645417 - 645470
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttt 643  Q
    ||||||||||  |||||||||||||||||||||||||||  |||||| ||||||    
T  645417 agtcatttatgactatatgcaatttataacatatatttagcattattattgttt 645470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 631 - 676
Target Start/End: Complemental strand, 3573845 - 3573799
Alignment:
Q  631 attatttttgttttggtagaa-tcctcgattttgattgcgattttac 676  Q
    |||||||||||||||||| || || ||||||||||||||||||||||    
T  3573845 attatttttgttttggtaaaactcatcgattttgattgcgattttac 3573799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 676
Target Start/End: Complemental strand, 10508982 - 10508916
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||||||||||  |||||| || ||||| || ||||| || |||||||||||||||||||    
T  10508982 atttataacatatatttattattattattattttgataaaatccatcaattttgattgcgattttac 10508916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 611 - 676
Target Start/End: Complemental strand, 7918312 - 7918249
Alignment:
Q  611 atttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    |||||||||||| |||||  |||||||||   |||||| ||||| ||||||||||||||||||||||    
T  7918312 atttataacataaatttagtattattttt---ttggtaaaatccatcgattttgattgcgattttac 7918249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1178 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 556 - 678
Target Start/End: Original strand, 429 - 554
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 652  Q
    |||||||||||||| |||||||| |||||||||||| ||||||||||  |||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  429 catttatgtatatgcattttgtgcactttgaactttgagtcatttatgactatatgcaatttatatcatatatttagcattatttttgttttggtagaat 528  T
Q  653 cctcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||||||||||    
T  529 cctcgattttgattgcgattttacga 554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 556 - 676
Target Start/End: Complemental strand, 5246 - 5124
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    |||||||||| |||||||||||||||||||||||||  ||||||||  ||| |||||||||||||||||||||||  |||||||||  ||||||||||||    
T  5246 catttatgtacatgtattttgtggactttgaactttgatcatttatgactacatgcaatttataacatatatttagcattatttttcatttggtagaatc 5147  T
Q  654 ctcgattttgattgcgattttac 676  Q
    |||||||||||||||||||||||    
T  5146 ctcgattttgattgcgattttac 5124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 564 - 678
Target Start/End: Original strand, 8260 - 8375
Alignment:
Q  564 tatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcctcgattt 661  Q
    |||||||||||| || ||||||||||||||||||||||  |||||||||||||||| ||||||||||  ||||| |||||||||||||||||||||||||    
T  8260 tatatgtattttctgtactttgaactttagtcatttatgactatatgcaatttata-catatatttagtattatatttgttttggtagaatcctcgattt 8358  T
Q  662 tgattgcgattttacga 678  Q
    |||||||||||||||||    
T  8359 tgattgcgattttacga 8375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 452 - 557
Target Start/End: Original strand, 7909 - 8015
Alignment:
Q  452 aaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcacttc 550  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||   ||| ||||||| |||||    
T  7909 aaggtcaattttttacccggttcgtaaattgacccgatttgaatccatgacccagttctataaatacctaaaaggccaaaaaatttcattcttttacttc 8008  T
Q  551 ccccaca 557  Q
    |||||||    
T  8009 ccccaca 8015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 7770 - 7819
Alignment:
Q  311 aaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  7770 aaatcctggtttttgcgactttgtgtagcttcaacgactcaaatccatag 7819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 556 - 676
Target Start/End: Original strand, 2872 - 2994
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaactttagtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatc 653  Q
    |||||||||| ||||||||| |||||||||||||||  ||||||||  ||| |||||| ||||||||||||||||  |||||||||  ||||||||||||    
T  2872 catttatgtacatgtattttatggactttgaactttgatcatttatgactacatgcaaattataacatatatttagcattatttttcatttggtagaatc 2971  T
Q  654 ctcgattttgattgcgattttac 676  Q
    |||||||||||||||||||||||    
T  2972 ctcgattttgattgcgattttac 2994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 557 - 678
Target Start/End: Complemental strand, 38565 - 38436
Alignment:
Q  557 atttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgt-----tttggta 648  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||  |||||| ||||||||||||||||||||  |||||||||||     |||||||    
T  38565 atttatgtatatgtattttgtggactttgaactttaagtcctttatgactatatacaatttataacatatatttatcattatttttgttttaatttggta 38466  T
Q  649 gaatcctcgattttgattgcgattttacga 678  Q
    ||||| |||||||| |||||||||||||||    
T  38465 gaatcttcgattttaattgcgattttacga 38436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 455 - 557
Target Start/End: Complemental strand, 128895 - 128792
Alignment:
Q  455 gtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcacttcccc 553  Q
    |||||||||| || |||||||| |||||||| |||||||||||||||||| |||||||||||| ||| |||||||||  |||| ||||||| ||||||||    
T  128895 gtcaattttttactcggttcgtcaattgacccgatttgaatccatgacccagttctataaatagccataaggccaaaaattttcattctttaacttcccc 128796  T
Q  554 caca 557  Q
    ||||    
T  128795 caca 128792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 360
Target Start/End: Complemental strand, 129072 - 129010
Alignment:
Q  298 gacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    ||||||||||  ||||||| | | ||||||| |||||||| ||||||||||||||||||||||    
T  129072 gacttaagtcccaaaatccaggtgtttgcgagtttgcgtagcttcaacgactcaaatccatag 129010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 556 - 592
Target Start/End: Complemental strand, 128710 - 128674
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttta 592  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  128710 catttgtgtatatgtattttgtggacattgaacttta 128674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 66; Significance: 8e-29; HSPs: 5)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 449 - 557
Target Start/End: Complemental strand, 1848 - 1739
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcac 547  Q
    |||| |||||||||||||| |||||| | |||||||| ||||||||||||| |||| |||||||||||||||| ||||||||| ||||| ||||||||||    
T  1848 ataagggtcaatttttgactcggttcctcaattgacctgatttgaatccattaccccgttctataaatacccataaggccaaattttttcattctttcac 1749  T
Q  548 ttcccccaca 557  Q
    ||||||||||    
T  1748 ttcccccaca 1739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 449 - 557
Target Start/End: Complemental strand, 7359 - 7250
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgaccc-gttctataaatacccaaaaggccaaacttttttattctttcac 547  Q
    |||| |||||||||||||| |||||| | |||||||| ||||||||||||| |||| |||||||||||||||| ||||||||| ||||| ||||||||||    
T  7359 ataagggtcaatttttgactcggttcctcaattgacctgatttgaatccattaccccgttctataaatacccataaggccaaattttttcattctttcac 7260  T
Q  548 ttcccccaca 557  Q
    ||||||||||    
T  7259 ttcccccaca 7250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 602 - 678
Target Start/End: Complemental strand, 76299 - 76218
Alignment:
Q  602 ctatatgcaatttataacatatatttaaaattatttttgt-----tttggtagaatcctcgattttgattgcgattttacga 678  Q
    |||||| ||||||||||||||||||||  |||||||||||     |||||||||||||| |||||| ||| |||||||||||    
T  76299 ctatatacaatttataacatatatttatcattatttttgttttaatttggtagaatcctggattttaatttcgattttacga 76218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 360
Target Start/End: Complemental strand, 2019 - 1957
Alignment:
Q  298 gacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    ||||||||||  ||||||| | | |||||||||||||||| ||| ||||||||||||||||||    
T  2019 gacttaagtcccaaaatccaggtgtttgcgactttgcgtagctttaacgactcaaatccatag 1957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 360
Target Start/End: Complemental strand, 7530 - 7468
Alignment:
Q  298 gacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    ||||||||||  ||||||| | | |||||||||||||||| ||| ||||||||||||||||||    
T  7530 gacttaagtcccaaaatccaggtgtttgcgactttgcgtagctttaacgactcaaatccatag 7468  T

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Target: scaffold0001 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 556 - 675
Target Start/End: Original strand, 142725 - 142845
Alignment:
Q  556 catttatgtatatgtattttgtggactttgaacttt-agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaat 652  Q
    |||||||||||||||||||| ||||||||||||||| | |||||| |  |||||||||||||||||||||||||||  ||||||||   |||||| ||||    
T  142725 catttatgtatatgtattttttggactttgaactttgaatcatttttgactatatgcaatttataacatatatttagcattatttt--gtttggtcgaat 142822  T
Q  653 cctcgattttgattgcgatttta 675  Q
    ||||||||||||||| |||||||    
T  142823 cctcgattttgattgagatttta 142845  T

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Target: scaffold0259 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 603 - 678
Target Start/End: Original strand, 18540 - 18616
Alignment:
Q  603 tatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||||||||||  ||||||||||||||| |||||||| || ||||||||||| |||||||||    
T  18540 tatatgcaatttataacatatatttagtattatttttgttttgatagaatccatctattttgattgcaattttacga 18616  T

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Target: scaffold0079 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 631 - 678
Target Start/End: Complemental strand, 14883 - 14836
Alignment:
Q  631 attatttttgttttggtagaatcctcgattttgattgcgattttacga 678  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14883 attatttttgttttggtagaatcctcgattttgattgcgattttacga 14836  T

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Target: scaffold0079; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 449 - 519
Target Start/End: Complemental strand, 14997 - 14927
Alignment:
Q  449 ataaaggtcaatttttgacccggttcgtaaattgaccggatttgaatccatgacccgttctataaataccc 519  Q
    |||| |||||||||||| |||||||||||||| |||| ||||||||| |||||| ||||||||||||||||    
T  14997 ataagggtcaatttttgtcccggttcgtaaatagacccgatttgaattcatgacgcgttctataaataccc 14927  T

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Target: scaffold0079; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 15176 - 15096
Alignment:
Q  280 cattgttataaaaaatccgacttaagtcataaaatcctgatttttgcgactttgcgtaacttcaacgactcaaatccatag 360  Q
    ||||||||| ||||| ||||||||||||  ||||| ||| |||||| ||||||| ||| ||||||||||||||||||||||    
T  15176 cattgttatcaaaaacccgacttaagtctcaaaattctggtttttgtgactttgtgtagcttcaacgactcaaatccatag 15096  T

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Target: scaffold0603 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 592 - 676
Target Start/End: Complemental strand, 8945 - 8858
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||  |||||| ||| ||||||||||||||||  ||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  8945 agtcatttatgactatatacaacttataacatatatttagcattatctttgttttggtaaaatccatcgattttgattgcgattttac 8858  T

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Target: scaffold2084 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold2084
Description:

Target: scaffold2084; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 631 - 678
Target Start/End: Original strand, 1 - 48
Alignment:
Q  631 attatttttgttttggtagaatcctcgattttgattgcgattttacga 678  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  1 attatttttgttttggtagaatcctctattttgattgcgactttacga 48  T

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Target: scaffold0186 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 676
Target Start/End: Original strand, 8587 - 8671
Alignment:
Q  592 agtcatttat--ctatatgcaatttataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||  |||||| | ||||||| ||||||||||  |||||||||   |||||| ||||| ||||||||||||||||||||||    
T  8587 agtcatttatgactatataccatttataccatatatttagtattattttt---ttggtaaaatccatcgattttgattgcgattttac 8671  T

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Target: scaffold0048 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 618 - 678
Target Start/End: Complemental strand, 48620 - 48559
Alignment:
Q  618 acatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 678  Q
    |||||||||||| ||||||||||||| | || | ||| ||||||||||| ||||||||||||    
T  48620 acatatatttaacattatttttgtttggataaagtccatcgattttgatcgcgattttacga 48559  T

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Target: scaffold0042 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 615 - 678
Target Start/End: Complemental strand, 93665 - 93602
Alignment:
Q  615 ataacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttacga 678  Q
    ||||||||||||||  | ||||| | |||||||| ||||| ||||||||||||||||||||||||    
T  93665 ataacatatatttagtaatatttgt-ttttggtaaaatccatcgattttgattgcgattttacga 93602  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 617 - 676
Target Start/End: Complemental strand, 56384 - 56324
Alignment:
Q  617 aacatatatttaaaattatttttgttttggtagaatcc-tcgattttgattgcgattttac 676  Q
    ||||||||||||  ||| ||||| | |||||| ||||| ||||||||||||||||||||||    
T  56384 aacatatatttagtattttttttttgttggtaaaatccatcgattttgattgcgattttac 56324  T

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