View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_149 (Length: 288)

Name: NF1137_low_149
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_149
NF1137_low_149
[»] chr4 (4 HSPs)
chr4 (1-93)||(25644107-25644199)
chr4 (84-130)||(25645144-25645190)
chr4 (14-57)||(20316731-20316774)
chr4 (21-58)||(22217559-22217596)
[»] chr7 (4 HSPs)
chr7 (21-121)||(2502510-2502609)
chr7 (18-121)||(2505327-2505429)
chr7 (1-58)||(10414629-10414686)
chr7 (1-58)||(8158465-8158522)
[»] chr2 (2 HSPs)
chr2 (5-85)||(8446055-8446134)
chr2 (2-58)||(12556698-12556754)
[»] chr8 (3 HSPs)
chr8 (1-58)||(26009132-26009189)
chr8 (18-58)||(45264410-45264450)
chr8 (39-121)||(28318473-28318554)
[»] chr1 (1 HSPs)
chr1 (11-96)||(34104385-34104468)
[»] chr6 (1 HSPs)
chr6 (3-58)||(26214413-26214468)
[»] chr5 (1 HSPs)
chr5 (1-60)||(25934012-25934071)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 25644107 - 25644199
Alignment:
Q  1 cctcttgaacagtttcattctgaatgcaaaattatgaatgagatgagttgtatttataagtttgatttccacctgggtttaggccttaaaaac 93  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25644107 cctcttgatcagtttcattatgaatgcaaaattatgaatgagatgagttgtatttataagtttgatttccacctgggtttgggccttaaaaac 25644199  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 25645144 - 25645190
Alignment:
Q  84 ccttaaaaactgggctttctccccttaaaagtaacaaagagcagttt 130  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  25645144 ccttaaaaactaggctttctccccttaaaagtaacaaagagcagttt 25645190  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 20316774 - 20316731
Alignment:
Q  14 ttcattctgaatgcaaaattatgaatgagatgagttgtatttat 57  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  20316774 ttcattctgaatgaaaaattatgaatgagatgagttgtatttat 20316731  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 22217596 - 22217559
Alignment:
Q  21 tgaatgcaaaattatgaatgagatgagttgtatttata 58  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  22217596 tgaatgaaaaattatgaatgagaggagttgtatttata 22217559  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 2502510 - 2502609
Alignment:
Q  21 tgaatgcaaaattatgaatgagatgagttgtatttataagtttgatttccacctgggtttaggccttaaaaactgggctttctccccttaaaagtaacaa 120  Q
    |||||| |||| ||||||||||| |||||||| ||||| |  |||||||||||||||| | ||  ||||||| |||||||||||| |||||||||| |||    
T  2502510 tgaatgaaaaactatgaatgagaggagttgtacttataggagtgatttccacctgggtct-gggattaaaaattgggctttctccacttaaaagtagcaa 2502608  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 2505327 - 2505429
Alignment:
Q  18 ttctgaatgcaaaattatgaatgagatgagttgtatttataagtttgatttccacctgggtttaggccttaaaaactgggctttctccccttaaaagtaa 117  Q
    ||||||||| |||| ||||||||||| ||| |||| | ||| |  |||||||||||||||||| ||   |||||| |||||||||||| ||||||||||     
T  2505327 ttctgaatgaaaaactatgaatgagaggagctgtactcataggaatgatttccacctgggttt-gggaataaaaattgggctttctccacttaaaagtag 2505425  T
Q  118 caaa 121  Q
    ||||    
T  2505426 caaa 2505429  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10414686 - 10414629
Alignment:
Q  1 cctcttgaacagtttcattctgaatgcaaaattatgaatgagatgagttgtatttata 58  Q
    |||||||||| ||||| || |||||| |||||||||||||||| |||| |||||||||    
T  10414686 cctcttgaaccgtttcgttatgaatgaaaaattatgaatgagaggagtggtatttata 10414629  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8158465 - 8158522
Alignment:
Q  1 cctcttgaacagtttcattctgaatgcaaaattatgaatgagatgagttgtatttata 58  Q
    ||||||||||   |||||| |||||| |||||||||||||||| ||| ||||||||||    
T  8158465 cctcttgaaccacttcattatgaatgaaaaattatgaatgagaggagatgtatttata 8158522  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 8446134 - 8446055
Alignment:
Q  5 ttgaacagtttcattctgaatgcaaaattatgaatgagatgagttgtatttataagtttgatttccacctgggtttaggcc 85  Q
    |||||| ||||| ||  ||||| |||||||||||||||| |||||||||||||| | |||||||||||||| |||| ||||    
T  8446134 ttgaactgtttcgtttcgaatgaaaaattatgaatgaga-gagttgtatttataggcttgatttccacctgagtttgggcc 8446055  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 12556754 - 12556698
Alignment:
Q  2 ctcttgaacagtttcattctgaatgcaaaattatgaatgagatgagttgtatttata 58  Q
    ||||||||| | |||||| |||||| |||||||||||||||| || || ||||||||    
T  12556754 ctcttgaaccgcttcattttgaatgaaaaattatgaatgagaggaattttatttata 12556698  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 26009132 - 26009189
Alignment:
Q  1 cctcttgaacagtttcattctgaatgcaaaattatgaatgagatgagttgtatttata 58  Q
    |||||||||| ||||| |||||||||| |||| || |||||||||||||| |||||||    
T  26009132 cctcttgaaccgtttcgttctgaatgcgaaatcataaatgagatgagttgcatttata 26009189  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 45264450 - 45264410
Alignment:
Q  18 ttctgaatgcaaaattatgaatgagatgagttgtatttata 58  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  45264450 ttctgaatgaaaaataatgaatgagatgagttgtatttata 45264410  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 28318473 - 28318554
Alignment:
Q  39 tgagatgagttgtatttataagtttgatttccacctgggtttaggccttaaaaactgggctttctccccttaaaagtaacaaa 121  Q
    ||||| ||||||||||||||   |||||||||||||||||||| | ||||||||||| |  || ||| |||||||||| ||||    
T  28318473 tgagaggagttgtatttatagacttgatttccacctgggtttaag-cttaaaaactgagtattttccacttaaaagtagcaaa 28318554  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 34104385 - 34104468
Alignment:
Q  11 agtttcattctgaatgcaaaattatgaatgagatgagttgtatttataagtttgatttccacctgggtttaggccttaaaaactgg 96  Q
    |||||| ||||||||| ||||| ||||||||||| |||| |||||||| ||||  ||||||||| ||||| || ||||||||||||    
T  34104385 agtttcgttctgaatgaaaaat-atgaatgagataagttctatttataggttttgtttccacct-ggtttcggacttaaaaactgg 34104468  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 26214468 - 26214413
Alignment:
Q  3 tcttgaacagtttcattctgaatgcaaaattatgaatgagatgagttgtatttata 58  Q
    |||||||| |||||||| |||| | ||||||||||||||||  |||||||||||||    
T  26214468 tcttgaactgtttcattttgaaggaaaaattatgaatgagagaagttgtatttata 26214413  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25934071 - 25934012
Alignment:
Q  1 cctcttgaacagtttcattctgaatgcaaaattatgaatgagatgagttgtatttataag 60  Q
    |||||||||| |||||||||||||||  ||| ||||||||| | ||| ||||||||||||    
T  25934071 cctcttgaaccgtttcattctgaatgagaaaatatgaatgataggagatgtatttataag 25934012  T

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