View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_152 (Length: 285)

Name: NF1137_low_152
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_152
NF1137_low_152
[»] chr8 (1 HSPs)
chr8 (45-222)||(29151249-29151426)
[»] chr2 (5 HSPs)
chr2 (91-144)||(2585991-2586044)
chr2 (62-146)||(2595329-2595410)
chr2 (65-145)||(2580619-2580696)
chr2 (179-223)||(2580709-2580753)
chr2 (179-223)||(2595422-2595466)
[»] chr6 (1 HSPs)
chr6 (59-146)||(30398416-30398500)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 29151249 - 29151426
Alignment:
Q  45 cataggaaagaaacttattcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagat 144  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29151249 cataggcaagaaacttattcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagat 29151348  T
Q  145 atttgttatccaagtaaagatatggaatttcgcaatgctattggattttgcaatggattgttttgtttaatttgttat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29151349 atttgttatccaagtaaagatatggaatttcgcaatgctattggattttgcaatggattgttttgtttaatttgttat 29151426  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 2585991 - 2586044
Alignment:
Q  91 cttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagat 144  Q
    ||||||||||||| |||||||||||||||||||||||||||| || ||||||||    
T  2585991 cttgagaacccgttgatcctccttccggataacctttgttatcaatgtcaagat 2586044  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 2595329 - 2595410
Alignment:
Q  62 ttcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagatat 146  Q
    ||||||||||||||| ||||||||| |||   |||||||||| ||||||||||||||| |||||||| |||  | ||||||||||    
T  2595329 ttcccttcccggtgcatcgtttaatcctt---gagaacccgttgatcctccttccggagaacctttgctatcgatgtcaagatat 2595410  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 2580619 - 2580696
Alignment:
Q  65 ccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagata 145  Q
    |||||||| ||||||||||||||||    |||||||||| |||||||||||| ||||||||| ||  |||| |||||||||    
T  2580619 ccttcccgatgcgtcgtttaattctc---gagaacccgtcgatcctccttccagataaccttcgtattgaatgtcaagata 2580696  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 2580709 - 2580753
Alignment:
Q  179 atgctattggattttgcaatggattgttttgtttaatttgttatt 223  Q
    |||||||||||| ||||||| ||||||||||||| ||| ||||||    
T  2580709 atgctattggatcttgcaatagattgttttgtttgattggttatt 2580753  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 2595422 - 2595466
Alignment:
Q  179 atgctattggattttgcaatggattgttttgtttaatttgttatt 223  Q
    |||||||||||| |||||||||| |||||||||| ||| ||||||    
T  2595422 atgctattggatcttgcaatggaatgttttgtttgattggttatt 2595466  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 30398416 - 30398500
Alignment:
Q  59 ttattcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagatat 146  Q
    |||||||||||||||||| || |||||||||    |||||||||| ||||||||||||| |||||| | |||||  | ||||||||||    
T  30398416 ttattcccttcccggtgcatcttttaattctc---gagaacccgttgatcctccttccgtataaccctagttatcgatgtcaagatat 30398500  T

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