View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_153 (Length: 281)

Name: NF1137_low_153
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_153
NF1137_low_153
[»] chr7 (14 HSPs)
chr7 (43-240)||(4845601-4845798)
chr7 (30-248)||(4815845-4816063)
chr7 (30-248)||(4783416-4783634)
chr7 (29-227)||(4711674-4711872)
chr7 (29-230)||(4644002-4644203)
chr7 (45-226)||(4673014-4673195)
chr7 (43-235)||(4637166-4637358)
chr7 (33-227)||(4696792-4696986)
chr7 (45-224)||(4667252-4667431)
chr7 (45-227)||(4864233-4864415)
chr7 (166-227)||(4653928-4653989)
chr7 (33-97)||(4653819-4653883)
chr7 (29-82)||(4631222-4631275)
chr7 (171-223)||(4631364-4631416)
[»] chr4 (1 HSPs)
chr4 (46-227)||(18925344-18925525)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 7e-89; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 4845798 - 4845601
Alignment:
Q  43 ttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagccaattaattt 142  Q
    ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4845798 ttggttgaacttgattttcaccaacattgactctataaaccatctccaaagctttatcattacgaatttcgtattctctgttgtcaaagccaattaattt 4845699  T
Q  143 gaaataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaatt 240  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  4845698 gaaataataatttaagtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaatt 4845601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 30 - 248
Target Start/End: Complemental strand, 4816063 - 4815845
Alignment:
Q  30 cctgtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaa 129  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| |  ||| ||| || ||||||  ||||||||     
T  4816063 cctgtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgttgttaagaacttggtattccgtgttgtcag 4815964  T
Q  130 agccaattaatttgaaataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataac 228  Q
    | |||  ||| |||| |  ||||| | ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4815963 aaccaggtaacttgatacgataatcttggtca-ctgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataac 4815865  T
Q  229 taggattcaattggtctgtg 248  Q
    ||||| ||||||||| ||||    
T  4815864 taggactcaattggtttgtg 4815845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 30 - 248
Target Start/End: Complemental strand, 4783634 - 4783416
Alignment:
Q  30 cctgtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaa 129  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| |  ||| ||| ||  || ||  |||||||||    
T  4783634 cctgtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtagttaagaacttgataatccgtgttgtcaa 4783535  T
Q  130 agccaattaatttgaaataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataac 228  Q
    | |||  ||| |||| |  ||||| | ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4783534 aaccaggtaaattgataagataatcttggtca-ctgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataac 4783436  T
Q  229 taggattcaattggtctgtg 248  Q
    ||||| ||||||||| ||||    
T  4783435 taggaatcaattggtttgtg 4783416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 29 - 227
Target Start/End: Complemental strand, 4711872 - 4711674
Alignment:
Q  29 acctgtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||| |||||| ||||||  ||||||||    
T  4711872 acctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccatttccaaagctttgtcgttatgaatttggtattccgtgttgtca 4711773  T
Q  129 aagccaattaatttgaaataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataa 227  Q
    ||| ||| | |||| |||   || ||| ||||||   |||  ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  4711772 aagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataa 4711674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 4644002 - 4644203
Alignment:
Q  29 acctgtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtca 128  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||    | |  |||    
T  4644002 acctgtatcttggtttggtggaacttgaattcgaccaacgttgactctataaaccatctccaaagctttgtcattaagaatttggtatggtatatcttca 4644101  T
Q  129 aagccaattaatttgaaataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataa 227  Q
     |||||  ||| |||| |  ||||| | ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4644102 gagccatctaacttgatacgataatcttggtca-ctgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataa 4644200  T
Q  228 cta 230  Q
    |||    
T  4644201 cta 4644203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 45 - 226
Target Start/End: Original strand, 4673014 - 4673195
Alignment:
Q  45 ggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagccaattaatttga 144  Q
    |||||||||||| ||| |||||||||||||||||||||||| ||||||||||| || ||| |||||| ||||||  ||||||| ||| ||| | |||| |    
T  4673014 ggtggaacttgactttcaccaacgttgactctataaaccatttccaaagctttttcgttatgaatttggtattccgtgttgtctaagtcaagtgatttca 4673113  T
Q  145 aataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcata 226  Q
    ||| ||||||| ||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  4673114 aatgataatttgggtca-ctgaggtttgtgtaatagagaaaagaaggcattgacacaatttcgattccgttaatgaaagcata 4673195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 235
Target Start/End: Original strand, 4637166 - 4637358
Alignment:
Q  43 ttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagccaattaattt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||  ||||||  |||  ||  || ||| |  |||    
T  4637166 ttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttgtctttatgaattcggtattccgtgtactctgagtcaactggttt 4637265  T
Q  143 gaaataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggatt 235  Q
     ||||| |||||| ||||||   |||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||| ||||||    
T  4637266 caaatagtaatttgggtcattgaggtttgtgtaatagagaaaagaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatt 4637358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 227
Target Start/End: Complemental strand, 4696986 - 4696792
Alignment:
Q  33 gtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagc 132  Q
    ||||||||||||||||||||||||||   ||| || ||||||||||||||| |||| || ||||| || ||| ||| || ||| || |||||||| |||     
T  4696986 gtatcttggtttggtggaacttgattgccacccacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccctgttgtctaagt 4696887  T
Q  133 caattaatttgaaataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataa 227  Q
    ||| | || | |||| ||| ||| ||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  4696886 caagtgatatcaaatgatattttgggtca-ctgaggtttgtgtaatagagaaaagaaggcattgacacaacttctattccgttaatgaaagcataa 4696792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 4667252 - 4667431
Alignment:
Q  45 ggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagccaattaatttga 144  Q
    |||||||||||| ||| ||||||| |||||||||||||| |||||| |||||| |  ||| |||| | ||||||  || |||||||| ||| |||| | |    
T  4667252 ggtggaacttgactttcaccaacgctgactctataaaccgtctccatagctttgttgttaggaatatggtattcattgctgtcaaagtcaagtaatgtca 4667351  T
Q  145 aataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagca 224  Q
    ||| ||||||| ||||| ||| |||||||||||||||||||||| ||||| |||||||  || |||||||| |||||||||    
T  4667352 aatgataatttgggtca-ctgaggtttgtgtaatagagaaaagacggcatagacacaatctcaattccgttgatgaaagca 4667431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 4864233 - 4864415
Alignment:
Q  45 ggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgta-ttcgctgttgtcaaagccaattaatttg 143  Q
    |||||||||||| ||| ||| || ||||||||||||||| |||| || ||||| || ||| ||| || ||| |||| ||||||||||| ||| | ||||     
T  4864233 ggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagttcg-tgttgtcaaagtcaagtgatttc 4864331  T
Q  144 aaataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataa 227  Q
    |||||||| ||| ||||||   ||||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||| ||||||    
T  4864332 aaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataa 4864415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 4653928 - 4653989
Alignment:
Q  166 ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataa 227  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||    
T  4653928 ggtttgagtaatagagaaaagaaggcatagacacaacttcaattccattaatgaaagcataa 4653989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 4653819 - 4653883
Alignment:
Q  33 gtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagcttt 97  Q
    |||||| ||||||||||||||||||||| |||||||||||| ||||||||  |||||| ||||||    
T  4653819 gtatctaggtttggtggaacttgattttcaccaacgttgacactataaactgtctccagagcttt 4653883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 4631222 - 4631275
Alignment:
Q  29 acctgtatcttggtttggtggaacttgattttgaccaacgttgactctataaac 82  Q
    ||||||||| |  ||||||||||||||||||| |||| ||||||||||||||||    
T  4631222 acctgtatcataatttggtggaacttgattttcaccagcgttgactctataaac 4631275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 4631364 - 4631416
Alignment:
Q  171 gtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagc 223  Q
    ||||||||||||||||||||||| |||||||  || |||||||| ||||||||    
T  4631364 gtgtaatagagaaaagaaggcatagacacaatctcaattccgttgatgaaagc 4631416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 227
Target Start/End: Complemental strand, 18925525 - 18925344
Alignment:
Q  46 gtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagccaattaatttgaa 145  Q
    ||||||||||||| | ||||||| |||||||||||||| |||| ||  |||| ||| | |  |||| |||||   |||| |||| ||||| ||| || ||    
T  18925525 gtggaacttgattatcaccaacgctgactctataaaccgtctctaacactttgtcactgctgattttgtatttcatgttttcaaggccaagtaactttaa 18925426  T
Q  146 ataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataa 227  Q
    || || ||||  |||||   |||||||||||||||||||||||||||| ||||| |  || |||||||| ||||||||||||    
T  18925425 atgatgatttgagtcattgaggtttgtgtaatagagaaaagaaggcatggacacgatctcaattccgttgatgaaagcataa 18925344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University