View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_154 (Length: 277)

Name: NF1137_low_154
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_154
NF1137_low_154
[»] chr3 (9 HSPs)
chr3 (29-269)||(24614526-24614766)
chr3 (29-269)||(24116608-24116848)
chr3 (29-261)||(24108901-24109133)
chr3 (29-269)||(23689627-23689867)
chr3 (29-269)||(23693085-23693325)
chr3 (29-269)||(23711525-23711765)
chr3 (29-269)||(23729981-23730221)
chr3 (29-269)||(23748436-23748676)
chr3 (29-269)||(24061864-24062104)
[»] chr6 (4 HSPs)
chr6 (38-140)||(11390762-11390864)
chr6 (38-140)||(11419760-11419862)
chr6 (163-233)||(11390684-11390754)
chr6 (163-233)||(11419870-11419940)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 24614766 - 24614526
Alignment:
Q  29 acacggaacaagcagcaatcattgaaggcttatagtcgcacacaatggattgatttgtcaagctgagctcagagaagaaaaacaccatgttctccatgat 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24614766 acacggaacaagcagcaatcattgaaggcttatagtcgcacacaatggattgatttgtcaagctcagctcagagaagaaaaacaccatgttctccatgat 24614667  T
Q  129 cttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgtaggataagc 228  Q
    |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24614666 cttgtcttgatcggataaaagacacgctctcatgtttctaacaagaaaaacataaggtgttggaaccgttaatatccaaccaagttcttgtaggataagc 24614567  T
Q  229 ttctccatttgacatatttcttccggcatataagtataatc 269  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  24614566 ttctccatttgacatatttcttccggcatataaatataatc 24614526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 24116608 - 24116848
Alignment:
Q  29 acacggaacaagcagcaatcattgaaggcttatagtcgcacacaatggattgatttgtcaagctgagctcagagaagaaaaacaccatgttctccatgat 128  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||||  || || |||||||||||||| |||||||||||    
T  24116608 acacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatagaatgatttgtcaagctgacttccgaaaagaaaaacaccatattctccatgat 24116707  T
Q  129 cttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgtaggataagc 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  24116708 cttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagtttttgtaggattagc 24116807  T
Q  229 ttctccatttgacatatttcttccggcatataagtataatc 269  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  24116808 ttctccatttgacatatttcttccggcatataaatataatc 24116848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 24108901 - 24109133
Alignment:
Q  29 acacggaacaagcagcaatcattgaaggcttatagtcgcacacaatggattgatttgtcaagctgagctcagagaagaaaaacaccatgttctccatgat 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||| |||||||||||    
T  24108901 acacggaacaagcagcaatcattgaaggcttatagtcgcacacaatagaatgatttgtcaagctgagttcagaaaagaaaaacaccatcttctccatgat 24109000  T
Q  129 cttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgtaggataagc 228  Q
    ||| |||||||| |||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24109001 cttatcttcatcagataaaaggcatgtccttatgtttctaataagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgtaggattagc 24109100  T
Q  229 ttctccatttgacatatttcttccggcatataa 261  Q
    ||||||||||||||||||||||  |||||||||    
T  24109101 ttctccatttgacatatttcttttggcatataa 24109133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 23689867 - 23689627
Alignment:
Q  29 acacggaacaagcagcaatcattgaaggcttatagtcgcacacaatggattgatttgtcaagctgagctcagagaagaaaaacaccatgttctccatgat 128  Q
    ||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||    
T  23689867 acacggaacaagcagcaatcaatgaaggcttgtagtcgcagacaatggaatgatttgtcaagctgagttccgaaaagaaaaacaccatgttctccatgat 23689768  T
Q  129 cttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgtaggataagc 228  Q
    |||||||||||| ||  ||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23689767 cttgtcttcatcagaagaaacacatgcctttacgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgcaggataagc 23689668  T
Q  229 ttctccatttgacatatttcttccggcatataagtataatc 269  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  23689667 ttctccatttgacatatttcttctggcatataaatataatc 23689627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 23693325 - 23693085
Alignment:
Q  29 acacggaacaagcagcaatcattgaaggcttatagtcgcacacaatggattgatttgtcaagctgagctcagagaagaaaaacaccatgttctccatgat 128  Q
    |||||| ||||||||||||||| |||||||| |||||||||||||| || |||||||| |||||||| ||||| |||||||||||||||| |||||||||    
T  23693325 acacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatgat 23693226  T
Q  129 cttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgtaggataagc 228  Q
    |||||||||||| ||||||  ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  23693225 cttgtcttcatccgataaattacatgcccttatgtttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagttcttgcaggataagc 23693126  T
Q  229 ttctccatttgacatatttcttccggcatataagtataatc 269  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  23693125 ttctccatttgacatatttcttctggcatataaatataatc 23693085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 23711765 - 23711525
Alignment:
Q  29 acacggaacaagcagcaatcattgaaggcttatagtcgcacacaatggattgatttgtcaagctgagctcagagaagaaaaacaccatgttctccatgat 128  Q
    |||||| ||||||||||||||| |||||||| |||||||||||||| || |||||||| |||||||| ||||| |||||||||||||||| |||||||||    
T  23711765 acacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatgat 23711666  T
Q  129 cttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgtaggataagc 228  Q
    |||||||||||| ||||||  ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  23711665 cttgtcttcatccgataaattacatgcccttatgtttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagttcttgcaggataagc 23711566  T
Q  229 ttctccatttgacatatttcttccggcatataagtataatc 269  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  23711565 ttctccatttgacatatttcttctggcatataaatataatc 23711525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 23730221 - 23729981
Alignment:
Q  29 acacggaacaagcagcaatcattgaaggcttatagtcgcacacaatggattgatttgtcaagctgagctcagagaagaaaaacaccatgttctccatgat 128  Q
    |||||| ||||||||||||||| |||||||| |||||||||||||| || |||||||| |||||||| ||||| |||||||||||||||| |||||||||    
T  23730221 acacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatgat 23730122  T
Q  129 cttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgtaggataagc 228  Q
    |||||||||||| ||||||  ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  23730121 cttgtcttcatccgataaattacatgcccttatgtttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagttcttgcaggataagc 23730022  T
Q  229 ttctccatttgacatatttcttccggcatataagtataatc 269  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  23730021 ttctccatttgacatatttcttctggcatataaatataatc 23729981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 23748676 - 23748436
Alignment:
Q  29 acacggaacaagcagcaatcattgaaggcttatagtcgcacacaatggattgatttgtcaagctgagctcagagaagaaaaacaccatgttctccatgat 128  Q
    |||||| ||||||||||||||| |||||||| |||||||||||||| || |||||||| |||||||| ||||| |||||||||||||||| |||||||||    
T  23748676 acacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatgat 23748577  T
Q  129 cttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgtaggataagc 228  Q
    |||||||||||| ||||||  ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  23748576 cttgtcttcatccgataaattacatgcccttatgtttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagttcttgcaggataagc 23748477  T
Q  229 ttctccatttgacatatttcttccggcatataagtataatc 269  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  23748476 ttctccatttgacatatttcttctggcatataaatataatc 23748436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 24062104 - 24061864
Alignment:
Q  29 acacggaacaagcagcaatcattgaaggcttatagtcgcacacaatggattgatttgtcaagctgagctcagagaagaaaaacaccatgttctccatgat 128  Q
    ||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||    
T  24062104 acacggaacaagcagcaatcaatgaaggcttgtagtcgcagacaatggaatgatttgtcaagctgagttccgaaaagaaaaacaccatgttctccatgat 24062005  T
Q  129 cttgtcttcatcggataaaagacacgcccttatgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgtaggataagc 228  Q
    |||||||||||| ||  ||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24062004 cttgtcttcatcagaagaaacacatgcctttacgtttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgcaggataagc 24061905  T
Q  229 ttctccatttgacatatttcttccggcatataagtataatc 269  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  24061904 ttctccatttgacatatttcttctggcatataaatataatc 24061864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 11390864 - 11390762
Alignment:
Q  38 aagcagcaatcattgaaggcttatagtcgcacacaatggattgatttgtcaagctgagctcagagaagaaaaacaccatgttctccatgatcttgtcttc 137  Q
    ||||||||||||| ||||| |||||||| |||||||| || | || ||||||||| ||||| || |||||||||||||| || ||||| |||||||||||    
T  11390864 aagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttc 11390765  T
Q  138 atc 140  Q
    |||    
T  11390764 atc 11390762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 11419760 - 11419862
Alignment:
Q  38 aagcagcaatcattgaaggcttatagtcgcacacaatggattgatttgtcaagctgagctcagagaagaaaaacaccatgttctccatgatcttgtcttc 137  Q
    ||||||||||||| ||||| |||||||| |||||||| || | || ||||||||| ||||| || |||||||||||||| || ||||| |||||||||||    
T  11419760 aagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttc 11419859  T
Q  138 atc 140  Q
    |||    
T  11419860 atc 11419862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 11390754 - 11390684
Alignment:
Q  163 tttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgtaggataagcttctc 233  Q
    ||||||||||| || ||||||||||||| ||| |||||| ||||| | |||| ||| || |||||||||||    
T  11390754 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatccagtttttgcagtataagcttctc 11390684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 11419870 - 11419940
Alignment:
Q  163 tttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgtaggataagcttctc 233  Q
    ||||||||||| || ||||||||||||| ||| |||||| ||||| | |||| ||| || |||||||||||    
T  11419870 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatccagtttttgcagtataagcttctc 11419940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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