View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_157 (Length: 274)

Name: NF1137_low_157
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_157
NF1137_low_157
[»] chr1 (1 HSPs)
chr1 (1-265)||(33987699-33987958)
[»] chr2 (12 HSPs)
chr2 (5-263)||(9020493-9020746)
chr2 (2-263)||(8988084-8988341)
chr2 (17-265)||(9026421-9026667)
chr2 (17-246)||(9031707-9031934)
chr2 (23-188)||(9023133-9023294)
chr2 (55-184)||(8991882-8992013)
chr2 (55-185)||(8973044-8973176)
chr2 (2-160)||(8996098-8996245)
chr2 (23-141)||(8975440-8975554)
chr2 (1-152)||(9016238-9016384)
chr2 (55-150)||(9030166-9030262)
chr2 (188-250)||(8996030-8996092)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 33987958 - 33987699
Alignment:
Q  1 taacactttcttcctcctttgttttctttattcttaatacattgtcatcaatctatcagagtagatacatacacataggccatcatggtgatttgccaaa 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||    ||||||||||||||||||||| |||||||| ||| ||||||||    
T  33987958 taacactttcttcctcctttgttttctttattcttaaaacattatcatcaatc----agagtagatacatacacatagtccatcatgatgaattgccaaa 33987863  T
Q  101 aattaaattgatattcttgtcttaaggcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaaggctattatat 200  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  33987862 aattaaattaatattcttgtcttacagcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatggactaaccgggtaaggctattatat 33987763  T
Q  201 ctttcatttttgtgttcatttatttgtttttgagtgccactgttgtgtgtttctgttagaattat 265  Q
    ||||||| |||||||||||| ||||| ||||||||||||| |||||| || ||||||||||||||    
T  33987762 ctttcatctttgtgttcattcatttg-ttttgagtgccacagttgtgcgtgtctgttagaattat 33987699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 5 - 263
Target Start/End: Complemental strand, 9020746 - 9020493
Alignment:
Q  5 actttcttcctcctttgttttctttattcttaatacattgtcatcaatctatcagagtagatacatacacataggccatcatggtgatttgccaaaaatt 104  Q
    ||||| ||||||||||||||||||||||||||| ||||| ||||||||| |    ||||||||||||||||| ||||| |||||||| ||||||||||||    
T  9020746 acttttttcctcctttgttttctttattcttaaaacattatcatcaatcaa----agtagatacatacacattggcca-catggtgaattgccaaaaatt 9020652  T
Q  105 aaattgatattcttgtcttaaggcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaaggctattatatcttt 204  Q
    ||||||||||||| ||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  9020651 aaattgatattctcgtcttaaagcaaaatatcatgatcggattcttatcttattccttgcttttgttgatgggctaaccggctaagggtattatatcttt 9020552  T
Q  205 catttttgtgttcatttatttgtttttgagtgccactgttgtgtgtttctgttagaatt 263  Q
    ||| |||||||||||| |||||||||||||||||||| |||||||| | ||||||||||    
T  9020551 catctttgtgttcattcatttgtttttgagtgccactattgtgtgtgtttgttagaatt 9020493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 2 - 263
Target Start/End: Complemental strand, 8988341 - 8988084
Alignment:
Q  2 aacactttcttcctcctttgttttctttattcttaatacattgtcatcaatctatcaga-gtagatacatacacataggccatcatggtgatttgccaaa 100  Q
    ||||||||||||||||||||||||| |||||||||| ||||| ||||||||| ||   | |||  |||||||||||||||||||||| ||| ||||||||    
T  8988341 aacactttcttcctcctttgttttccttattcttaaaacattatcatcaatc-atagtacgtaagtacatacacataggccatcatgatgaattgccaaa 8988243  T
Q  101 aattaaattgatattcttgtcttaaggcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaaggctattatat 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8988242 aataaaattgatattcttgtcttaaggcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaaggctattatat 8988143  T
Q  201 ctttcatttttgtgttcatttatttgtttttgagtgccactgttgtgtgtttctgttagaatt 263  Q
    ||||||| ||||||||||||     ||||||||| ||||||||||||||| ||||||| ||||    
T  8988142 ctttcatctttgtgttcattc----gtttttgagagccactgttgtgtgtgtctgttataatt 8988084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 9026667 - 9026421
Alignment:
Q  17 ctttgttttctttattcttaatacattgtcatcaatctatcagagtaga--tacatacacataggccatcatggtgatttgccaaaaattaaattgatat 114  Q
    ||||| ||||||||||||||| ||||| |||||||||    |||||| |  |||| |||||||||||||| || ||| ||||||||||||||||||||||    
T  9026667 ctttgatttctttattcttaaaacattatcatcaatc----agagtaaaaatacacacacataggccatcgtgatgaattgccaaaaattaaattgatat 9026572  T
Q  115 tcttgtcttaaggcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaaggctattatatctttcatttttgtg 214  Q
    ||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  9026571 tcttgtcttaaagcaaaatatcatgatcttattcttttcttatcccttgcttttgttgatgggctaacttgctaaggctattatatctttcatctttgtg 9026472  T
Q  215 ttcatttatttgtttttgagtgccactgttgtgtgtttctgttagaattat 265  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| |||||    
T  9026471 ttcattcatttgtttttgagtgccactgttgtgtgtgtctgttagtattat 9026421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 9031934 - 9031707
Alignment:
Q  17 ctttgttttctttattcttaatacattgtcatcaatctatcagagtaga--tacatacacataggccatcatggtgatttgccaaaaattaaattgatat 114  Q
    ||||| ||||||||||||||| ||||| |||||||||    |||||| |  |||| |||||||||||||| || ||| ||||||||||||||||||||||    
T  9031934 ctttgatttctttattcttaaaacattatcatcaatc----agagtaaaaatacacacacataggccatcgtgatgaattgccaaaaattaaattgatat 9031839  T
Q  115 tcttgtcttaaggcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaaggctattatatctttcatttttgtg 214  Q
    ||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  9031838 tcttgtcttaaagcaaaatatcatgatcttattcttttcttatcccttgcttttgttgatgggctaacttgctaaggctattatatctttcatctttgtg 9031739  T
Q  215 ttcatttatttgtttttgagtgccactgttgt 246  Q
    |||||| |||||||||||||||||||||||||    
T  9031738 ttcattcatttgtttttgagtgccactgttgt 9031707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 9023294 - 9023133
Alignment:
Q  23 tttctttattcttaatacattgtcatcaatctatcagagtagatacatacacataggccatcatggtgatttgccaaaaattaaattgatattcttgtct 122  Q
    ||||||||||||||| ||||| | |||||||    | |||| |||||||||| |||||||||| | ||| ||||||||||||||||||||||||||| ||    
T  9023294 tttctttattcttaaaacattatgatcaatc----atagtaaatacatacacctaggccatcacgatgaattgccaaaaattaaattgatattcttgact 9023199  T
Q  123 taaggcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggcta 188  Q
    ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9023198 taaagcaaagtatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggcta 9023133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 55 - 184
Target Start/End: Complemental strand, 8992013 - 8991882
Alignment:
Q  55 atcagagtagatacatacacataggccatcatggtgatttgc--caaaaattaaattgatattcttgtcttaaggcaaaatatcatgatctgattcttat 152  Q
    ||||||||| ||||||||||||||||||||||  ||| |||   ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8992013 atcagagtaaatacatacacataggccatcattatgaattgaagcaaaaattaaattgatattcttgtcttaaagcaaaatatcatgatctgattcttat 8991914  T
Q  153 cttatcccttgcttttgttgatgggctaaccg 184  Q
    |||||||||||||||||||||| |||||||||    
T  8991913 cttatcccttgcttttgttgataggctaaccg 8991882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 8973176 - 8973044
Alignment:
Q  55 atcagagtagatacatacacataggccatcatggtgatttgc--caaaaattaaattgatattcttgtcttaaggcaaaatatcatgatctgattcttat 152  Q
    ||||||||| |||| ||||||||||||| |||  ||| |||   ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  8973176 atcagagtaaatacttacacataggccaccattatgaattgaagcaaaaattaaattgatattcttgtcttgaagcaaaatatcatgatctgattcttat 8973077  T
Q  153 cttatcccttgcttttgttgatgggctaaccgg 185  Q
    |||||||||||||||||||||| ||||||||||    
T  8973076 cttatcccttgcttttgttgataggctaaccgg 8973044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 8996245 - 8996098
Alignment:
Q  2 aacactttcttcctcctttgttttctttattcttaatacattgtcatcaatctatcagagtagatacatacacataggccatcatggtgatttgccaaaa 101  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||    | |||||||||||| ||||||||||||||||||| |||||||||    
T  8996245 aacactttcttcctcctttgttttctttattcttaaaacattatcatcaatc----atagtagatacataaacataggccatcatggtgaattgccaaaa 8996150  T
Q  102 attaaattgatattcttgtcttaaggcaaaatatcatgatctgattcttatcttatccc 160  Q
    |||||||| |||||||       | ||||||||| |||||||||||| |||||||||||    
T  8996149 attaaattaatattct-------aagcaaaatattatgatctgattcgtatcttatccc 8996098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 8975554 - 8975440
Alignment:
Q  23 tttctttattcttaatacattgtcatcaatctatcagagtagatacatacacataggccatcatggtgatttgccaaaaattaaattgatattcttgtct 122  Q
    |||| |||||||||| ||||| |||||||||    |||||| ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| ||||    
T  8975554 tttcgttattcttaaaacattatcatcaatc----agagtaaatacatacacataggccatcatgatgaattgccaacaattaaattgatattctagtct 8975459  T
Q  123 taaggcaaaatatcatgat 141  Q
    |||   |||||||||||||    
T  8975458 taaacaaaaatatcatgat 8975440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 9016384 - 9016238
Alignment:
Q  1 taacactttcttcctcctttgttttctttattcttaatacattgtcatcaatctatcagagtagatacatacacataggccatcatggtgatttgccaaa 100  Q
    |||||||||| | || |||||||| |||||||||||| ||||| ||||||||     |||||| |||||||||||| |||||  ||  ||| |||  |||    
T  9016384 taacactttcgttctactttgttt-ctttattcttaaaacattatcatcaatt----agagtaaatacatacacatgggccacgattatgaattgaaaaa 9016290  T
Q  101 aattaaattgatattcttgtcttaaggcaaaatatcatgatctgattcttat 152  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  9016289 aattaaattgatattcttgtcttatagcaaaatatcatgatctgactcttat 9016238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 9030262 - 9030166
Alignment:
Q  55 atcagagtagatacatacacataggccatcatggtgatttgccaaaaa-ttaaattgatattcttgtcttaaggcaaaatatcatgatctgattctt 150  Q
    ||||||||| ||| | ||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||| || |||||||| ||||||||||||    
T  9030262 atcagagtaaatagacacacataggccatcatgatgaattgtcaaaaaattaaattgatattcttgtcttaaagccaaatatcacgatctgattctt 9030166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 8996092 - 8996030
Alignment:
Q  188 aaggctattatatctttcatttttgtgttcatttatttgtttttgagtgccactgttgtgtgt 250  Q
    |||| ||||||||||||||| ||||||||| || ||||||||||||||||||| |||||||||    
T  8996092 aaggttattatatctttcatctttgtgttctttcatttgtttttgagtgccacagttgtgtgt 8996030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University