View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1137_low_159 (Length: 270)
Name: NF1137_low_159
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_159 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 28297360 - 28297231
Alignment:
| Q |
114 |
gtaaaagaaaagccaaaaacaataagccatggagtaccaaacacttctactagtgattacgtctttgtgtgcaaccattctcatcttcattcttagaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28297360 |
gtaaaagaaaagccaaaaacaataagccatggagtaccaaacacttctactagtgattacctctttgtgtacaaccattctcatcttcattcttagaaaa |
28297261 |
T |
|
| Q |
214 |
ttaatccaaacccaaaattctactaaactt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28297260 |
ttaatccaaacccaaaattctactaaactt |
28297231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 121 - 243
Target Start/End: Complemental strand, 28310841 - 28310719
Alignment:
| Q |
121 |
aaaagccaaaaacaataagccatggagtaccaaacacttctactagtgattacgtctttgtgtgcaaccattctcatcttcattcttagaaaattaatcc |
220 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||| ||| |||||||| || |
|
|
| T |
28310841 |
aaaaggcaaaaacaataagctatggactaccaaacacttctactggtgattacctctttgtgtgcgagcattctcatcttcatttttaaaaaattaaacc |
28310742 |
T |
|
| Q |
221 |
aaacccaaaattctactaaactt |
243 |
Q |
| |
|
|||| ||||||||||| |||||| |
|
|
| T |
28310741 |
aaactcaaaattctacaaaactt |
28310719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 28321403 - 28321293
Alignment:
| Q |
133 |
caataagccatggagtaccaaacacttctactagtgattacgtctttgtgtgcaaccattctcatcttcattcttagaaaattaatccaaacccaaaatt |
232 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||||||| | | | | ||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
28321403 |
caataagtcatggaccatcaaacacttctactagtgatttcctttgtaagtgcaaccattctcatcttcattcttagaaaatcaaaccaaacccaaaatt |
28321304 |
T |
|
| Q |
233 |
ctactaaactt |
243 |
Q |
| |
|
||||||||||| |
|
|
| T |
28321303 |
ctactaaactt |
28321293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 28297436 - 28297385
Alignment:
| Q |
30 |
actataactactggaaccgtatctatccccatatcacaccgtatcagtgctc |
81 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
28297436 |
actataactactggaaccgtatctatcctcatatcacaccctatcagtgctc |
28297385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 28287921 - 28287982
Alignment:
| Q |
182 |
gtgcaaccattctcatcttcattcttagaaaattaatccaaacccaaaattctactaaactt |
243 |
Q |
| |
|
|||||| ||| |||||| |||||||||||||||||| |||||| ||||||||||| |||||| |
|
|
| T |
28287921 |
gtgcaagcatcctcatcctcattcttagaaaattaaaccaaactcaaaattctacaaaactt |
28287982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University