View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_16 (Length: 658)

Name: NF1137_low_16
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_16
NF1137_low_16
[»] chr8 (1 HSPs)
chr8 (17-630)||(36373824-36374449)


Alignment Details
Target: chr8 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 17 - 630
Target Start/End: Complemental strand, 36374449 - 36373824
Alignment:
Q  17 gataattagataataaataacatacctgaattacatacaatagacatgatatggataaaaaacaaattagccaaaagaataaaaccaatttaatgcaagg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36374449 gataattagataataaataacatacctgaattacatacaatagacatgatatggataaaaaacaaattagccaaaagaataaaaccaatttaatgcaagg 36374350  T
Q  117 tgacaaacttttttcttgcctaaaagtgcactgacaagaccaccaacactgatctcaaggtgatacgattccacaccctccctaacagcagagacaggca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36374349 tgacaaacttttttcttgcctaaaagtgcactgacaagaccaccaacactgatctcaaggtgatacgattccacaccctccctaacagcagagacaggca 36374250  T
Q  217 acctgttagctaccaccaacaaacgttgtttgcgaggcctatcatccgcaaacaacgtttccgctacctcttcctcattatcattctcatttatgaatga 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  36374249 acctgttagctaccaccaacaaacgttgtttgcgaggcctatcatccgcaaacaacgtttccgcgacctcttcctcattgtcattctcatttatgaatga 36374150  T
Q  317 atcactgtaaagttgctctccctctttgccaccatctcttccgtcctcggccgattgagtataccggctcgatttccttagctctctttctctcaaaagc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36374149 atcactgtaaagttgctctccctctttgccaccatctcttccgtcctcggccgattgagtataccggctcgatttccttagttctctttctctcaaaagc 36374050  T
Q  417 ctttccaatctcgacctcggtgttaaaggaagactgtgattgttcccctgcatacgcctgacctgaaattttccattatttgaacttattttacagtcca 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36374049 ctttccaatctcgacctcggtgttaaaggaagactgtgattgttcccctgcatacgcctgacctgaaattttccattatttgaacttattttacagtcca 36373950  T
Q  517 gtacaaaataacagtcgataatgttcaatctatgaagcact------------gacacagacgtcagacacaatactggtacaaattttgaaaaattgaa 604  Q
    ||||||||||||||||||||||||| |||||||||||||||            |||||||||||||||||||||| ||||||||||||||||||||||||    
T  36373949 gtacaaaataacagtcgataatgtttaatctatgaagcactgacagagacactgacacagacgtcagacacaatattggtacaaattttgaaaaattgaa 36373850  T
Q  605 gtaatcacacgtgccgtgtccgtgct 630  Q
    |||||||||| |||||||||||||||    
T  36373849 gtaatcacacttgccgtgtccgtgct 36373824  T

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