View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_160 (Length: 270)
Name: NF1137_low_160
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_160 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 29 - 270
Target Start/End: Complemental strand, 46896673 - 46896432
Alignment:
| Q |
29 |
aagttttaagaagtttggaattaataaacatctaaattcgatctgaaatgcatgagagtacaatatgtatgatctgtatgctaagatcataggaaagggt |
128 |
Q |
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| T |
46896673 |
aagttttaagaagtttggaattaataaacatctaaattcgatctgaaatgcatgagagtacactatgtatgatatgtatgctaagatcataggagagtgt |
46896574 |
T |
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| Q |
129 |
gatggcataatattatcacatggatattatattgagaaacttcttacgaagtttatataatttgaaaacaaatcattgggtatcccttatgattcttaaa |
228 |
Q |
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| T |
46896573 |
gatggcataatattatcacatggatattatattgagaaacttcttacgaagtttatataatttgaaaacaaatcattgggaatcccttatgattcttaaa |
46896474 |
T |
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| Q |
229 |
gtgtcagagacatttcattgtatttttaattatcggaagttt |
270 |
Q |
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| T |
46896473 |
gtgtcagagacatttcattgtatttttaattatcggaagttt |
46896432 |
T |
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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 28764785 - 28764862
Alignment:
| Q |
184 |
tataatttgaaaacaaatcattgggtatcccttatgattcttaaagtgtcagagacatttcattgtatttttaattat |
261 |
Q |
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| T |
28764785 |
tataatttagaaacaaattattgggaatcccttatgattcttaaactatcagagacacttcattttatttttaattat |
28764862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 38313829 - 38313877
Alignment:
| Q |
213 |
ccttatgattcttaaagtgtcagagacatttcattgtatttttaattat |
261 |
Q |
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| T |
38313829 |
ccttatgatcccgaaagtgtaagagaaatttcattgtatttttaattat |
38313877 |
T |
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