View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_161 (Length: 269)
Name: NF1137_low_161
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_161 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 29292355 - 29292123
Alignment:
| Q |
29 |
atgtggtctgttatatatttttcttaacgacttctatacttgatctttatacatggtagcaagatgtacaccttaatgttttgggtctattgttgattct |
128 |
Q |
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| T |
29292355 |
atgtggtctgttatatatttttcttaacgacttctatacttgatctttatacatggtagcaagatgtacaccttaatgttttgggtctattgttgattct |
29292256 |
T |
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| Q |
129 |
tggtgctcgttgatccaccttagttgaatgaatatattttttgtattggtgttgggtcttgcaagaggaaaaatattgaattatgttaacctgtaaatcg |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29292255 |
tggtgctcgttgatccaccttagttgaatgaatatattttttgtattggtgttgggtcttgcaagaggaaaaatattgaattatgttaacctgtaaatca |
29292156 |
T |
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| Q |
229 |
gatgctaggttcggtagagatactatattattg |
261 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
29292155 |
gatgctaggttcggtagagatactatattattg |
29292123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 9505574 - 9505806
Alignment:
| Q |
29 |
atgtggtctgttatatatttttcttaacgacttctatacttgatctttatacatggtagcaagatgtacaccttaatgttttgggtctattgttgattct |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
9505574 |
atgtggtctgttatatatttttcttaacgacttctatacttgatctttatacatggtagcaagatgtatacgttaatgttttgggtctattgttgattct |
9505673 |
T |
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| Q |
129 |
tggtgctcgttgatccaccttagttgaatgaatatattttttgtattggtgttgggtcttgcaagaggaaaaatattgaattatgttaacctgtaaatcg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9505674 |
tggtgctcgttgatccaccttagttgaatgaatatattttttgtattggtttttggtcttgcaagaggaaaaatattgaattatgttaacctgtaaattg |
9505773 |
T |
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| Q |
229 |
gatgctaggttcggtagagatactatattattg |
261 |
Q |
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||| ||||||||||||||||||||||||||| |
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| T |
9505774 |
gattacaggttcggtagagatactatattattg |
9505806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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