View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_162 (Length: 267)
Name: NF1137_low_162
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_162 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 40040662 - 40040463
Alignment:
| Q |
46 |
gtgaaaacagagttcaacgaagtgaaccttaacttccnnnnnnnnnnnnnntgttcttcctcgttcaagcttacaaacctcatgcacaccatgtctgttg |
145 |
Q |
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| T |
40040662 |
gtgaaaacagagttcaacgaagtgaaccttaacttccaaaaaaaccaaaaatgttcttcctcgttcaagcttacaaacctcatgcacaccatgtctgttg |
40040563 |
T |
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| Q |
146 |
cagtttccttaacaacaacaaacccaacaaccttttcaatcaacaaacccttatcagtaatcccaccactttcttcatcgacatacacacttcatatcac |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
40040562 |
cagtttccttaacaacaacaaacccaacaaccttttcaatcaacaaacctttgtcagtaatcccaccactttcttcatcaacatacacacttcatctcac |
40040463 |
T |
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