View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_164 (Length: 267)

Name: NF1137_low_164
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_164
NF1137_low_164
[»] chr1 (21 HSPs)
chr1 (46-244)||(16964872-16965074)
chr1 (112-244)||(46318435-46318567)
chr1 (107-233)||(49801796-49801920)
chr1 (174-238)||(15232926-15232990)
chr1 (156-244)||(52078005-52078093)
chr1 (108-244)||(14478433-14478570)
chr1 (66-185)||(23091569-23091689)
chr1 (156-244)||(5612945-5613034)
chr1 (156-244)||(9226075-9226164)
chr1 (156-243)||(13894781-13894869)
chr1 (156-244)||(48527701-48527789)
chr1 (174-238)||(26802113-26802178)
chr1 (150-244)||(44999315-44999411)
chr1 (80-121)||(46467436-46467477)
chr1 (199-244)||(51445757-51445802)
chr1 (157-244)||(7306116-7306204)
chr1 (108-238)||(24517428-24517560)
chr1 (108-233)||(26286589-26286715)
chr1 (112-209)||(42245778-42245872)
chr1 (76-121)||(16123587-16123632)
chr1 (133-238)||(40109531-40109638)
[»] chr8 (17 HSPs)
chr8 (107-244)||(32695087-32695222)
chr8 (111-244)||(24192478-24192612)
chr8 (136-244)||(17455214-17455322)
chr8 (174-238)||(13117511-13117575)
chr8 (147-244)||(20180525-20180623)
chr8 (61-185)||(8571379-8571504)
chr8 (109-244)||(32798344-32798480)
chr8 (109-238)||(40437409-40437539)
chr8 (199-244)||(42098731-42098776)
chr8 (76-121)||(22551298-22551343)
chr8 (188-244)||(9854772-9854828)
chr8 (108-238)||(22620057-22620191)
chr8 (103-185)||(6398323-6398405)
chr8 (156-244)||(31845656-31845744)
chr8 (103-147)||(37473703-37473747)
chr8 (103-147)||(37473811-37473855)
chr8 (103-147)||(37473919-37473963)
[»] chr2 (17 HSPs)
chr2 (107-244)||(18616817-18616953)
chr2 (107-244)||(29219554-29219689)
chr2 (107-244)||(29332853-29332988)
chr2 (107-244)||(1085198-1085336)
chr2 (108-230)||(35903719-35903844)
chr2 (108-232)||(8320936-8321064)
chr2 (80-232)||(34513336-34513490)
chr2 (109-243)||(42641672-42641808)
chr2 (156-236)||(4920920-4920999)
chr2 (106-238)||(17459428-17459565)
chr2 (156-238)||(28611114-28611195)
chr2 (112-193)||(7436685-7436766)
chr2 (80-121)||(34513108-34513149)
chr2 (203-244)||(35903674-35903715)
chr2 (174-234)||(43033258-43033319)
chr2 (156-221)||(43034340-43034405)
chr2 (61-117)||(34464267-34464323)
[»] chr3 (27 HSPs)
chr3 (107-244)||(10731940-10732077)
chr3 (107-244)||(35371075-35371212)
chr3 (107-236)||(26886448-26886576)
chr3 (109-244)||(41264468-41264601)
chr3 (68-244)||(53614046-53614221)
chr3 (106-244)||(34819094-34819233)
chr3 (109-236)||(3208660-3208788)
chr3 (107-244)||(27841518-27841658)
chr3 (108-232)||(46368987-46369110)
chr3 (156-233)||(53622830-53622907)
chr3 (108-197)||(50809563-50809652)
chr3 (108-197)||(50866210-50866299)
chr3 (76-121)||(53420610-53420655)
chr3 (108-244)||(13621087-13621223)
chr3 (156-244)||(37415162-37415252)
chr3 (194-244)||(10301101-10301151)
chr3 (194-244)||(10338905-10338955)
chr3 (143-232)||(53624210-53624299)
chr3 (110-197)||(43174593-43174679)
chr3 (156-243)||(44602904-44602991)
chr3 (108-244)||(49379869-49380005)
chr3 (190-244)||(14745095-14745149)
chr3 (199-233)||(38242419-38242453)
chr3 (108-197)||(50810719-50810808)
chr3 (108-197)||(50865056-50865145)
chr3 (175-244)||(54110164-54110232)
chr3 (108-244)||(53194425-53194561)
[»] chr5 (14 HSPs)
chr5 (107-244)||(30858982-30859119)
chr5 (107-244)||(30910910-30911048)
chr5 (107-236)||(22047909-22048038)
chr5 (109-244)||(36898791-36898930)
chr5 (108-232)||(9220270-9220394)
chr5 (137-244)||(4127089-4127202)
chr5 (107-244)||(11262560-11262705)
chr5 (156-244)||(1102785-1102873)
chr5 (137-244)||(13520640-13520748)
chr5 (174-231)||(15548423-15548478)
chr5 (156-244)||(10735930-10736018)
chr5 (158-223)||(11797395-11797461)
chr5 (190-244)||(39604022-39604075)
chr5 (182-235)||(17420474-17420526)
[»] chr7 (18 HSPs)
chr7 (109-244)||(32255158-32255290)
chr7 (107-244)||(22537727-22537862)
chr7 (76-244)||(13564020-13564187)
chr7 (107-244)||(11502235-11502369)
chr7 (107-236)||(46835851-46835980)
chr7 (147-244)||(44372896-44372994)
chr7 (147-244)||(44381752-44381850)
chr7 (156-244)||(22336147-22336234)
chr7 (156-243)||(16756039-16756125)
chr7 (76-121)||(25533478-25533523)
chr7 (156-235)||(43441522-43441601)
chr7 (190-244)||(35295866-35295920)
chr7 (156-244)||(30334504-30334590)
chr7 (189-244)||(41328386-41328440)
chr7 (109-244)||(43460636-43460771)
chr7 (156-244)||(48312207-48312296)
chr7 (61-118)||(3413832-3413889)
chr7 (199-244)||(39981484-39981529)
[»] chr6 (9 HSPs)
chr6 (108-244)||(17837784-17837920)
chr6 (108-244)||(29381542-29381678)
chr6 (107-236)||(18346563-18346690)
chr6 (107-244)||(5187433-5187570)
chr6 (156-244)||(23392382-23392472)
chr6 (108-244)||(11722953-11723090)
chr6 (108-197)||(232316-232405)
chr6 (199-236)||(7311628-7311665)
chr6 (108-238)||(11967389-11967523)
[»] scaffold0118 (1 HSPs)
scaffold0118 (107-244)||(43386-43522)
[»] chr4 (22 HSPs)
chr4 (107-244)||(7707757-7707893)
chr4 (106-244)||(2312295-2312429)
chr4 (111-244)||(44498628-44498762)
chr4 (107-244)||(23202014-23202150)
chr4 (108-244)||(56085514-56085650)
chr4 (108-244)||(1519977-1520114)
chr4 (108-244)||(26496122-26496258)
chr4 (108-192)||(27847895-27847979)
chr4 (156-244)||(36845577-36845665)
chr4 (156-232)||(38555138-38555216)
chr4 (149-238)||(34326900-34326989)
chr4 (189-244)||(19750188-19750243)
chr4 (189-244)||(19789563-19789618)
chr4 (176-244)||(27850816-27850886)
chr4 (180-238)||(49896468-49896527)
chr4 (194-244)||(52138692-52138742)
chr4 (156-244)||(23103869-23103957)
chr4 (108-238)||(41349339-41349471)
chr4 (188-231)||(13165675-13165718)
chr4 (156-244)||(45535212-45535300)
chr4 (199-244)||(52240045-52240090)
chr4 (156-244)||(26629957-26630045)
[»] scaffold0077 (1 HSPs)
scaffold0077 (106-244)||(53997-54132)
[»] scaffold0219 (1 HSPs)
scaffold0219 (108-232)||(8000-8128)
[»] scaffold2071 (1 HSPs)
scaffold2071 (61-121)||(446-506)
[»] scaffold0011 (1 HSPs)
scaffold0011 (156-244)||(127600-127688)
[»] scaffold0128 (1 HSPs)
scaffold0128 (82-121)||(23047-23086)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 46 - 244
Target Start/End: Original strand, 16964872 - 16965074
Alignment:
Q  46 ttgtgaagttctttgatgagtgttgatgggtgtgagttgaagatgatgaagatttataaggtagaa----gatgaagaaaaggaaaaacatttaggtgtt 141  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  16964872 ttgtgaagttctttgatgagtgttgatggatgtgagttgaagatgatgaagatttataaggtagaaagaagatgaagaaaaggaaaaacatttaggtgtt 16964971  T
Q  142 ggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtg 241  Q
    ||||||||||||| | ||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  16964972 ggtggtacatcgtaatataaaatagacctgcgtaatacaatggttctcttttaaaagaaaaaacaaacggttgaaattaaaataattaataggatctatg 16965071  T
Q  242 gtg 244  Q
    |||    
T  16965072 gtg 16965074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 244
Target Start/End: Original strand, 46318435 - 46318567
Alignment:
Q  112 gatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacgg 211  Q
    |||||||||||||||||| | |||||||||| ||||||||| | ||||||||||||| ||| ||||| ||||||||| ||  |||| ||| ||||||||     
T  46318435 gatgaagaaaaggaaaaaaagttaggtgttgctggtacatcataagataaaatagacatgtataatctaatggttcttttaaaaaaaaaagatcaaacga 46318534  T
Q  212 ttgaaattaaaataattaataggatctgtggtg 244  Q
    || ||||||||||| |||||||||||| |||||    
T  46318535 tttaaattaaaatatttaataggatctatggtg 46318567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 233
Target Start/End: Complemental strand, 49801920 - 49801796
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatca 206  Q
    |||||||||||||||| |||||| ||| || ||||||||||||||||| ||||||||||||| ||  | |||||||||||| | ||||| | ||||||||    
T  49801920 tagaagatgaagaaaatgaaaaaaatt-agatgttggtggtacatcgtaagataaaatagacctgcatgatccaatggttc-cctttaacaaaaaaatca 49801823  T
Q  207 aacggttgaaattaaaataattaatag 233  Q
    ||||||| |||||||||||||||||||    
T  49801822 aacggtttaaattaaaataattaatag 49801796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 15232990 - 15232926
Alignment:
Q  174 taatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatct 238  Q
    |||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  15232990 taatccaatggttctcttttaaaaaaaatatcaaacggttgatattaaaataattaataggatct 15232926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 52078005 - 52078093
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||| ||||  |||||| |||||| ||| |||  || ||||||||||||||| |||||||||||||||||||||||| |||||    
T  52078005 agataaaatacacttacgtaatctaatggtcctcctttttaaaaaaaatcaaacggttaaaattaaaataattaataggatctatggtg 52078093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 14478570 - 14478433
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctc-ttttaaaagaaaaatca 206  Q
    |||||||||||||| ||| ||| | ||| |||||| ||   || ||| |||||||||| || || ||||| |||||   ||| |||||||| ||||||||    
T  14478570 agaagatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacacctgcgtaattcaatgaccctccttttaaaaaaaaaatca 14478471  T
Q  207 aacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||| |||||| ||||||||||||||||| |||||    
T  14478470 aacggtttaaattagaataattaataggatctatggtg 14478433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 23091689 - 23091569
Alignment:
Q  66 tgttgatgggtgtgagttgaagatgatgaagatttataaggtagaagatgaagaaa-aggaaaaacatttaggtgttggtggtacatcgtgagataaaat 164  Q
    ||||||||  ||||||||||||||||||||||||  |||||||||||||||||||| |   |||| | |||| ||||| ||||||||||| || || |||    
T  23091689 tgttgatgaatgtgagttgaagatgatgaagattattaaggtagaagatgaagaaagaaataaaagaattagttgttgttggtacatcgtaagttacaat 23091590  T
Q  165 agacttgtgtaatccaatggt 185  Q
    ||||  || |||| |||||||    
T  23091589 agacacgtataattcaatggt 23091569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 5612945 - 5613034
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctc-ttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||| ||||  |||||| ||||||  || ||||||||  | |||||||||||| |||||||||||||||||||||||| |||||    
T  5612945 agataaaatacacttacgtaatctaatggtcatccttttaaaaatataatcaaacggtttaaattaaaataattaataggatctatggtg 5613034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 9226075 - 9226164
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaa-atcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||||||| || || ||  |||||||||||||||| | |||| |||||||  || |||||||||||||||||||||||| |||||    
T  9226075 agataaaatagacatgcgtgatttaatggttctcttttaataaaaaagatcaaacaatttaaattaaaataattaataggatctatggtg 9226164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 13894869 - 13894781
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttct-cttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggt 243  Q
    |||||||||| || || ||||| |||||||| | | ||||||| ||| ||||||||||| |||||||||||||||| ||||||| ||||    
T  13894869 agataaaatacacatgcgtaattcaatggtttttcatttaaaaaaaagatcaaacggtttaaattaaaataattaacaggatctatggt 13894781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 48527789 - 48527701
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||| |||||  ||||||||||||  || ||||||| ||| ||||||| ||| |||||||||||||| ||| ||||| |||||    
T  48527789 agataaaatacacttgcataatccaatggtcatcatttaaaaaaaagatcaaacagtttaaattaaaataattgataagatctatggtg 48527701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 26802178 - 26802113
Alignment:
Q  174 taatccaatggttctcttttaaaagaaa-aatcaaacggttgaaattaaaataattaataggatct 238  Q
    ||||| |||||| ||||||||||| ||| |||||||||||| |||||||||| ||||||| |||||    
T  26802178 taatcaaatggtcctcttttaaaaaaaataatcaaacggtttaaattaaaatgattaatatgatct 26802113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 44999315 - 44999411
Alignment:
Q  150 atcgtgagataaaatagacttgtgtaatccaatggttctctttt--aaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||| ||||| |||||||||| |||||||||||||  ||||||  ||||  || |||||| |||| || ||||||||||||||| ||||| |||||    
T  44999315 atcgtaagatataatagacttgcgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggtg 44999411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 46467477 - 46467436
Alignment:
Q  80 agttgaagatgatgaagatttataaggtagaagatgaagaaa 121  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  46467477 agttgaagatgatgaagattagtaaggtagaagatgaagaaa 46467436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 51445802 - 51445757
Alignment:
Q  199 aaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||||||||| |||||| ||||||||||||||||| |||||    
T  51445802 aaaaatcaaacggtttaaattagaataattaataggatctatggtg 51445757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 7306116 - 7306204
Alignment:
Q  157 gataaaatagacttgtgtaatccaatggttctcttttaaaagaaa-aatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||||  ||||||||| | |||| ||||||||||| ||| ||||||| || | ||||||||| |||||||| ||||| |||||    
T  7306116 gataaaatagaaatgtgtaatcaattggtcctcttttaaaaaaaacaatcaaatggctaaaattaaaagaattaataagatctatggtg 7306204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 238
Target Start/End: Original strand, 24517428 - 24517560
Alignment:
Q  108 agaagatgaagaaaaggaa-aaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaa-aatc 205  Q
    ||||||||||||||| | | ||| | |||||||||| |||| || | | ||||| ||||||| ||  ||||| |||||| ||||||| ||| ||| ||||    
T  24517428 agaagatgaagaaaatgtacaaaaaattaggtgttgatggtgcaccattagatagaatagacctgcataatcaaatggtcctctttttaaaaaaataatc 24517527  T
Q  206 aaacggttgaaattaaaataattaataggatct 238  Q
    |||||||| |||| ||||| ||||||| |||||    
T  24517528 aaacggtttaaataaaaatgattaatatgatct 24517560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 26286715 - 26286589
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctc-ttttaaaagaaaaatca 206  Q
    |||||||||||||| ||| | | | |||||| ||| || | || |||  ||||||||| ||||  |||||| ||||||  || ||||||||  | |||||    
T  26286715 agaagatgaagaaagggagacataattaggttttgttgattcaccgtacgataaaatacacttacgtaatctaatggtcatccttttaaaaatataatca 26286616  T
Q  207 aacggttgaaattaaaataattaatag 233  Q
    ||||||| |||||||||||||||||||    
T  26286615 aacggtttaaattaaaataattaatag 26286589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 42245778 - 42245872
Alignment:
Q  112 gatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaac 209  Q
    ||||||||||||| |||| | |||| |||||||||||||| || | ||||||||||||  |||||| ||||||| ||| ||||| | ||| |||||||    
T  42245778 gatgaagaaaagggaaaaaaattagatgttggtggtacat-gtaaaataaaatagact--tgtaattcaatggtcctcctttaacaaaaagatcaaac 42245872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 16123632 - 16123587
Alignment:
Q  76 tgtgagttgaagatgatgaagatttataaggtagaagatgaagaaa 121  Q
    |||||||||||||||||||||||   |||||||||||| |||||||    
T  16123632 tgtgagttgaagatgatgaagatcggtaaggtagaagacgaagaaa 16123587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 40109638 - 40109531
Alignment:
Q  133 ttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaa--atcaaacggttgaaattaaaataattaa 230  Q
    |||||||||| |||| || | | ||||| ||||||| ||  ||||| |||||| ||||||| ||| ||||  ||||||||||| |||| ||||| |||||    
T  40109638 ttaggtgttgatggtgcaccattagatagaatagacctgcataatcaaatggtcctctttttaaaaaaaataatcaaacggtttaaataaaaatgattaa 40109539  T
Q  231 taggatct 238  Q
    || |||||    
T  40109538 tatgatct 40109531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 32695087 - 32695222
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatca 206  Q
    ||||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  32695087 tagaagatgaagaaaaggaaaaaaatt-aggtgttggtggtatatcgtaagataaaatagacttgtctaatccaatggttctcttttaaaa-aaaaatca 32695184  T
Q  207 aacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  32695185 aacggtttaaattaaaataattaataggatctatggtg 32695222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 111 - 244
Target Start/End: Original strand, 24192478 - 24192612
Alignment:
Q  111 agatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaa-aagaaaaatcaaac 209  Q
    ||||||||||||| ||||| | ||||||||||||| |||||| | | ||||||||||| || |||||| |||||||||||||||| || |||||||||||    
T  24192478 agatgaagaaaagtaaaaaaaattaggtgttggtgatacatcctaaaataaaatagacatgcgtaatctaatggttctcttttaagaaaaaaaatcaaac 24192577  T
Q  210 ggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||  ||||||||||||||||||||||| |||||    
T  24192578 ggttttaattaaaataattaataggatctatggtg 24192612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 136 - 244
Target Start/End: Complemental strand, 17455322 - 17455214
Alignment:
Q  136 ggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaatagga 235  Q
    |||||| |||||||||||| ||||||||||||| || |||||| |||||| ||||||||||| | | || |||||||| |||||||||||||||||| ||    
T  17455322 ggtgttagtggtacatcgtaagataaaatagacctgcgtaatctaatggtcctcttttaaaaaatagataaaacggttcaaattaaaataattaataaga 17455223  T
Q  236 tctgtggtg 244  Q
    ||| |||||    
T  17455222 tctatggtg 17455214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 13117511 - 13117575
Alignment:
Q  174 taatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatct 238  Q
    |||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  13117511 taatccaatggttctcttttaaaaaaaacatcaaacggttgatattaaaataattaataggatct 13117575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 20180525 - 20180623
Alignment:
Q  147 tacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaa-atcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||| | ||||||||||||| ||||||||| |||||| ||||||||| | |||| |||||||||||  ||||||||||||||||||||||| |||||    
T  20180525 tacatcctaagataaaatagacatgtgtaatctaatggtcctcttttaagaaaaaagatcaaacggttttaattaaaataattaataggatctatggtg 20180623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 8571379 - 8571504
Alignment:
Q  61 atgagtgttgatgggtgtgagttgaagatgatgaagatttataaggtagaagatgaagaaaagga-aaaacatttaggtgttggtggtacatcgtgagat 159  Q
    |||| ||||||||  ||||||||||||||||||||||||  ||||||||||||||||||||   | |||| | |||| ||||| ||||||||||| || |    
T  8571379 atgaatgttgatgaatgtgagttgaagatgatgaagattattaaggtagaagatgaagaaagaaataaaagaattagttgttgttggtacatcgtaagtt 8571478  T
Q  160 aaaatagacttgtgtaatccaatggt 185  Q
    | |||||||  || ||||||||||||    
T  8571479 acaatagacacgtataatccaatggt 8571504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 244
Target Start/End: Original strand, 32798344 - 32798480
Alignment:
Q  109 gaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaa-atcaa 207  Q
    |||||||||||||| |||||| | ||| ||| || |||| || ||| |||||||||| || |  | ||||||  ||| ||| ||| |||||||| |||||    
T  32798344 gaagatgaagaaaaagaaaaaaagttaagtggtgatggttcaacgtaagataaaatacacctacgcaatccagcggtcctccttttaaagaaaagatcaa 32798443  T
Q  208 acggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||| |||||||||||||||||||||||| |||||    
T  32798444 acggtttaaattaaaataattaataggatctatggtg 32798480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 238
Target Start/End: Original strand, 40437409 - 40437539
Alignment:
Q  109 gaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaa---tc 205  Q
    |||||||||||||||| |||| | ||||| |||||| ||||||||| || |||||||||| || || ||| |||| |  |||||||||| || ||   ||    
T  40437409 gaagatgaagaaaagggaaaaaagttaggcgttggttgtacatcgt-aggtaaaatagacatgcgtgatctaatg-tcatcttttaaaaaaataaatatc 40437506  T
Q  206 aaacggttgaaattaaaataattaataggatct 238  Q
    |||| ||| ||||||||||||||||||||||||    
T  40437507 aaacagtttaaattaaaataattaataggatct 40437539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 42098776 - 42098731
Alignment:
Q  199 aaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  42098776 aaaaatcaaacggttgaaattaaagtaattaataggatctatggtg 42098731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 22551343 - 22551298
Alignment:
Q  76 tgtgagttgaagatgatgaagatttataaggtagaagatgaagaaa 121  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||    
T  22551343 tgtgagttaaagatgatgaagattagtaaggtagaagatgaagaaa 22551298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 9854772 - 9854828
Alignment:
Q  188 tcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||| |||||||||| |||| |||||| || |||||||||||||| |||||    
T  9854772 tcttttaaaaaaaaaatcaaatggtttaaattagaagaattaataggatctatggtg 9854828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 22620191 - 22620057
Alignment:
Q  108 agaagatgaagaaaaggaa-aaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaa--- 203  Q
    ||||||||||||||| | | ||| | |||||||||| |||| || | | ||||| ||||||| ||  ||||| |||||| ||||||||||| |||||       
T  22620191 agaagatgaagaaaatgtacaaaaaattaggtgttgatggtgcaccattagatagaatagacctgcataatcaaatggtcctcttttaaaaaaaaaaaaa 22620092  T
Q  204 tcaaacggttgaaattaaaataattaataggatct 238  Q
    |||||||||| |||| ||||| ||||||| |||||    
T  22620091 tcaaacggtttaaataaaaatgattaatatgatct 22620057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 6398323 - 6398405
Alignment:
Q  103 aaggtagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggt 185  Q
    |||| |||||||||||||||||||| | | |||||||||| || | || ||| ||||||| |||||||   ||||||||||||    
T  6398323 aaggaagaagatgaagaaaaggaaataaaattaggtgttgttgattcaccgtaagataaagtagacttacataatccaatggt 6398405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 31845656 - 31845744
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||| || |  |||||| ||||||  || ||||||| ||| ||||||| ||| | ||||||||||||||||||| || |||||    
T  31845656 agataaaatacacctacgtaatctaatggtcatcctttaaaaaaaagatcaaacagtttacattaaaataattaataggacctatggtg 31845744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 37473703 - 37473747
Alignment:
Q  103 aaggtagaagatgaagaaaaggaaaaacatttaggtgttggtggt 147  Q
    |||| |||||||||||||| ||||||| | |||||||||||||||    
T  37473703 aaggaagaagatgaagaaagggaaaaaaaattaggtgttggtggt 37473747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 37473811 - 37473855
Alignment:
Q  103 aaggtagaagatgaagaaaaggaaaaacatttaggtgttggtggt 147  Q
    |||| |||||||||||||| ||||||| | |||||||||||||||    
T  37473811 aaggaagaagatgaagaaagggaaaaaaaattaggtgttggtggt 37473855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 37473919 - 37473963
Alignment:
Q  103 aaggtagaagatgaagaaaaggaaaaacatttaggtgttggtggt 147  Q
    |||| |||||||||||||| ||||||| | |||||||||||||||    
T  37473919 aaggaagaagatgaagaaagggaaaaaaaattaggtgttggtggt 37473963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 18616817 - 18616953
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatca 206  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||  || ||||||||    
T  18616817 tagaagatgaagaaaaggaaaaaaatt-aggtgttggtggtacatcgtaagataaaatagacctatctaatccaatggttctcttttttaaaaaaaatca 18616915  T
Q  207 aacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||||||||||||||||||||||||| |||||    
T  18616916 aacggttgaaattaaaataattaataggatctatggtg 18616953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 29219689 - 29219554
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatca 206  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||      |||||||    
T  29219689 tagaagatgaagaaaaggaaaaaaatt-aggtgttggtggtacatcgtaagataaaatagacctatctaatccaatggttctctttt-tttttaaaatca 29219592  T
Q  207 aacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||||||||||||||||||||||||| |||||    
T  29219591 aacggttgaaattaaaataattaataggatctatggtg 29219554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 29332988 - 29332853
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatca 206  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||      |||||||    
T  29332988 tagaagatgaagaaaaggaaaaaaatt-aggtgttggtggtacatcgtaagataaaatagacctatctaatccaatggttctctttt-tttttaaaatca 29332891  T
Q  207 aacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||||||||||||||||||||||||| |||||    
T  29332890 aacggttgaaattaaaataattaataggatctatggtg 29332853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 1085198 - 1085336
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctc--ttttaaaagaaaaat 204  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||| || ||  ||||||||| ||||||  ||||     ||||||    
T  1085198 tagaagatgaagaaaagaaaaaaaatt-aggtgttggtggtacatcgtaagataaaataaacctgcttaatccaattgttctcttttttttttaaaaaat 1085296  T
Q  205 caaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  1085297 caaacggtcgaaattaaaataattaataggatctatggtg 1085336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 35903844 - 35903719
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctctt---ttaaaagaaaaat 204  Q
    |||||||||||||||||||||| | |||||| ||| ||||||||| | ||||||||||||| ||| ||||| ||||||||| ||     |||| ||||||    
T  35903844 agaagatgaagaaaaggaaaaaaagttaggtattgctggtacatcataagataaaatagacatgtataatctaatggttcttttaaaaaaaaaaaaaaat 35903745  T
Q  205 caaacggttgaaattaaaataattaa 230  Q
    ||||||||| ||||||||||| ||||    
T  35903744 caaacggtttaaattaaaatatttaa 35903719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 232
Target Start/End: Complemental strand, 8321064 - 8320936
Alignment:
Q  108 agaagatgaagaaaagga---aaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaa-aa 203  Q
    ||||||||||||||| ||   |||| | |||||||||| |||| || | | |||||||||||||||| || ||| |||| | ||||||||||| ||| ||    
T  8321064 agaagatgaagaaaaagataaaaaaaaattaggtgttgatggtgcaccattagataaaatagacttgcgtgatcaaatgttcctcttttaaaaaaaacaa 8320965  T
Q  204 tcaaacggttgaaattaaaataattaata 232  Q
    |||||||||| ||||||||||||||||||    
T  8320964 tcaaacggtttaaattaaaataattaata 8320936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 232
Target Start/End: Original strand, 34513336 - 34513490
Alignment:
Q  80 agttgaagatgatgaagatttataaggtagaagatgaagaa--aaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaat 177  Q
    ||||||||||||||||||||  |||||||||||||||||||  || |||||| | |||| ||||| ||||||| ||| || || |||||||  |  ||||    
T  34513336 agttgaagatgatgaagattagtaaggtagaagatgaagaaagaaagaaaaa-aattagttgttgttggtacaccgtaagttacaatagacacgcataat 34513434  T
Q  178 ccaatggttctc-ttttaaaagaaaaatcaaacggttgaaattaaaataattaata 232  Q
    |||||| |  || |||||||| | | ||||||||||| ||||||||| ||||||||    
T  34513435 ccaatgatcatctttttaaaaaacagatcaaacggtttaaattaaaaaaattaata 34513490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 42641672 - 42641808
Alignment:
Q  109 gaagatgaagaaaaggaaaaacat-ttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaa-atca 206  Q
    |||||||||||||| |||||| |  ||| ||||||  ||| || ||| |||||||||| || |  || |||||| | ||||||||||||| |||| ||||    
T  42641672 gaagatgaagaaaaagaaaaaaaagttaagtgttgaaggttcaacgtaagataaaatacacctacgtgatccaacgattctcttttaaaaaaaaagatca 42641771  T
Q  207 aacggttgaaattaaaataattaataggatctgtggt 243  Q
    ||| ||| |||||||||||||||||||||||| ||||    
T  42641772 aacagtttaaattaaaataattaataggatctatggt 42641808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 4920920 - 4920999
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggat 236  Q
    |||||||||| || || ||||||||||| | ||| ||| ||| ||||||||||||||| |||||| |||||||||||||||    
T  4920920 agataaaatacacctgcgtaatccaatgatcctccttttaaa-aaaaatcaaacggtttaaattagaataattaataggat 4920999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 17459565 - 17459428
Alignment:
Q  106 gtagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctctttt---------aaa 196  Q
    |||||||||||||||| | |||||   |||||||||||||||| ||| | |||||||||||    || ||||||||||||||||||||         |||    
T  17459565 gtagaagatgaagaaaggaaaaaa---ttaggtgttggtggtatatcat-agataaaataggtcagtctaatccaatggttctctttttttaaaaaaaaa 17459470  T
Q  197 agaaaaatcaaacggttgaaattaaaataattaataggatct 238  Q
      ||||||||||||||| |||||| |||||||||||||||||    
T  17459469 taaaaaatcaaacggtttaaattataataattaataggatct 17459428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 28611114 - 28611195
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatct 238  Q
    |||||||||| || || ||||| |||||   ||| ||| ||| ||||||||||||||| ||||| ||||||||||||||||||    
T  28611114 agataaaatacacctgcgtaattcaatgaccctccttttaaaaaaaaatcaaacggtttaaatt-aaataattaataggatct 28611195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 193
Target Start/End: Complemental strand, 7436766 - 7436685
Alignment:
Q  112 gatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctctttt 193  Q
    ||||| ||||| ||| || | ||||||| | |||||||||| | ||||||||||||  |||||||||||| ||| |||||||    
T  7436766 gatgaggaaaatgaagaaaagttaggtggtagtggtacatcctaagataaaatagatatgtgtaatccaacggtcctctttt 7436685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 34513149 - 34513108
Alignment:
Q  80 agttgaagatgatgaagatttataaggtagaagatgaagaaa 121  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  34513149 agttgaagatgatgaaaattagtaaggtagaagatgaagaaa 34513108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 35903715 - 35903674
Alignment:
Q  203 atcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||||| ||||||||||| |||||||||||| |||||    
T  35903715 atcaaacggtttaaattaaaatatttaataggatctatggtg 35903674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 43033319 - 43033258
Alignment:
Q  174 taatccaatggttctcttttaaaagaaaa-atcaaacggttgaaattaaaataattaatagg 234  Q
    |||||||||||| |||||||| ||||||  |||| | |||| ||||||||||||||||||||    
T  43033319 taatccaatggtcctcttttagaagaaatgatcacaaggtttaaattaaaataattaatagg 43033258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 43034340 - 43034405
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaa 221  Q
    ||||||||||||| ||  ||||||||||||  |||||||||| |  |||||||||||| |||||||    
T  43034340 agataaaatagacatgcataatccaatggtcatcttttaaaaaattaatcaaacggtttaaattaa 43034405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 34464323 - 34464267
Alignment:
Q  61 atgagtgttgatgggtgtgagttgaagatgatgaagatttataaggtagaagatgaa 117  Q
    |||| ||||||||  |||||||||||||| ||| |||||  ||||||||||||||||    
T  34464323 atgaatgttgatgaatgtgagttgaagataatggagattagtaaggtagaagatgaa 34464267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 10731940 - 10732077
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatca 206  Q
    ||||||||||||||||||||||| | ||||||||||||| ||| || | ||||||||||||||||  ||||||||||||||| | |||||||||||||||    
T  10731940 tagaagatgaagaaaaggaaaaaaaattaggtgttggtgatacttcttaagataaaatagacttgcctaatccaatggttctttgttaaaagaaaaatca 10732039  T
Q  207 aacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  10732040 aacggtcgaaattaaaataattaataggatctatggtg 10732077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 35371212 - 35371075
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctc-ttttaaaagaaaaatc 205  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||  |||||||||||||||| |||||||| |||||||    
T  35371212 tagaagatgaagaaaaggaaaaaaatt-aggtgttggtggtacatcgtaagataaaatagacttgcctaatccaatggttctctttttaaaaaaaaaatc 35371114  T
Q  206 aaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||  ||| |||||||||||||||||||||||| |||||    
T  35371113 aaaaagttaaaattaaaataattaataggatctatggtg 35371075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 107 - 236
Target Start/End: Complemental strand, 26886576 - 26886448
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatca 206  Q
    |||||||||||||||| |||||| ||| |||||||||||||||||||| ||||||||||||| ||  |||||||||||||| ||||||||| ||||||||    
T  26886576 tagaagatgaagaaaatgaaaaaaatt-aggtgttggtggtacatcgtaagataaaatagacatgcataatccaatggttcccttttaaaaaaaaaatca 26886478  T
Q  207 aacggttgaaattaaaataattaataggat 236  Q
    ||||||| ||||||||||||||||||||||    
T  26886477 aacggtttaaattaaaataattaataggat 26886448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 109 - 244
Target Start/End: Original strand, 41264468 - 41264601
Alignment:
Q  109 gaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaa 208  Q
    ||||||||||||||| |||||   |||||||||||||||||||||| ||||||||||||| ||  |||| ||||||||||||||| ||| ||||||||||    
T  41264468 gaagatgaagaaaagaaaaaaa--ttaggtgttggtggtacatcgtaagataaaatagacctgcttaattcaatggttctctttttaaaaaaaaatcaaa 41264565  T
Q  209 cggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||| ||||||||||||||||||||||||| |||||    
T  41264566 cggtcgaaattaaaataattaataggatctatggtg 41264601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 68 - 244
Target Start/End: Original strand, 53614046 - 53614221
Alignment:
Q  68 ttgatgggtgtgagttgaagatgatgaagatttataaggtagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaataga 167  Q
    |||||| |||||||||||||||||||||||||  ||| | |||||||||||||| ||||||  ||| |||||||||| ||||||| | || |||||||      
T  53614046 ttgatgagtgtgagttgaagatgatgaagattattaaaggagaagatgaagaaagggaaaataatt-aggtgttggtagtacatcataagctaaaataag 53614144  T
Q  168 cttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    | ||| ||||| |||||||||||||| ||| || |||| ||||||||||||||||||||||| |||||||| |||||    
T  53614145 catgtctaatctaatggttctctttttaaaaaataatctaacggttgaaattaaaataattactaggatctatggtg 53614221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 106 - 244
Target Start/End: Original strand, 34819094 - 34819233
Alignment:
Q  106 gtagaagatgaagaaaaggaaaaacat-ttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaat 204  Q
    |||||||||||||||||| ||||| |  |||||||||||||||||| | | ||||||||||||||||  ||||||||||||||| |||| | | |||||     
T  34819094 gtagaagatgaagaaaagaaaaaaaaaattaggtgttggtggtacaccataagataaaatagacttgcctaatccaatggttctttttttataaaaaaaa 34819193  T
Q  205 caaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||| ||| |||||||||||| ||||||||||| |||||    
T  34819194 caaacagtttaaattaaaataagtaataggatctatggtg 34819233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 3208788 - 3208660
Alignment:
Q  109 gaagatgaagaaaaggaaaaacat-ttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaaga-aaaatca 206  Q
    ||||||||||||||||||||| |  |||||||||| ||||||||||| ||||||| ||||||||  || |||||||||||| |||| ||| | |||||||    
T  3208788 gaagatgaagaaaaggaaaaaaaaattaggtgttgatggtacatcgtaagataaattagacttgccta-tccaatggttctatttttaaaaataaaatca 3208690  T
Q  207 aacggttgaaattaaaataattaataggat 236  Q
    ||||||| |||||| |||||||||||||||    
T  3208689 aacggtttaaattataataattaataggat 3208660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 27841518 - 27841658
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacat-ttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctc--ttttaaaagaaaaa 203  Q
    |||||||||||||||| |||||| |  |||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||  ||||      ||||    
T  27841518 tagaagatgaagaaaaagaaaaaaaaattaggtgttggtggtacatcgtaagataaaatagacttgcctaatccaatagttctcttttttttttttaaaa 27841617  T
Q  204 tcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||| ||| ||||||||||||||| |||||||| |||||    
T  27841618 tcaaacagttaaaattaaaataattattaggatctatggtg 27841658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 232
Target Start/End: Complemental strand, 46369110 - 46368987
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaa 207  Q
    ||||||||| |||||| ||||| | ||| |||||||||||||||||| ||||||||||||  | ||||||| ||||||||||| |||||| || ||| ||    
T  46369110 agaagatgatgaaaagaaaaaaaagttacgtgttggtggtacatcgtaagataaaatagatatttgtaatctaatggttctctcttaaaa-aataataaa 46369012  T
Q  208 acggttgaaattaaaataattaata 232  Q
    | | || ||||||||||||||||||    
T  46369011 atgatttaaattaaaataattaata 46368987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 53622907 - 53622830
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaatag 233  Q
    ||||||||||||| || |||||||||| || ||| ||||||| || |||||||||||| ||||||||| |||||||||    
T  53622907 agataaaatagacatgcgtaatccaatcgtactcctttaaaataagaatcaaacggtttaaattaaaacaattaatag 53622830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 50809652 - 50809563
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaa 197  Q
    ||||||||||||||  |||||  | |||| ||||| || | || ||| ||||||||||||| || |||||||||||||||||||||||||    
T  50809652 agaagatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggttctcttttaaaa 50809563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 50866210 - 50866299
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaa 197  Q
    ||||||||||||||  |||||  | |||| ||||| || | || ||| ||||||||||||| || |||||||||||||||||||||||||    
T  50866210 agaagatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggttctcttttaaaa 50866299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 53420655 - 53420610
Alignment:
Q  76 tgtgagttgaagatgatgaagatttataaggtagaagatgaagaaa 121  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||    
T  53420655 tgtgagttgaagatgatgaagattattaaggtagaagatgaagaaa 53420610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 13621223 - 13621087
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaa 207  Q
    |||||||||||||| ||| ||| | ||| |||||| ||   || ||| |||||||||| |  || |||||||||||   ||| ||| ||| |||||| ||    
T  13621223 agaagatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacatctgcgtaatccaatgaccctccttttaaaaaaaaattaa 13621124  T
Q  208 acggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||| |||||| ||||||||||||||||| |||||    
T  13621123 acggtttaaattagaataattaataggatctatggtg 13621087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 37415252 - 37415162
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaa--aatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||| || |||||||| ||||||| ||||||||||| |||  |||  ||||||| ||||||||| |||||||| ||||| |||||    
T  37415252 agataaaataaacatgtgtaattcaatggtcctcttttaaaaaaaaacaatttaacggttaaaattaaaagaattaataagatctatggtg 37415162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 10301151 - 10301101
Alignment:
Q  194 aaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||| |||||    
T  10301151 aaaaaaaaaatcaaacagtttaaattaaaataattaataggatctatggtg 10301101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 10338955 - 10338905
Alignment:
Q  194 aaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||| |||||    
T  10338955 aaaaaaaaaatcaaacagttaaaattaaaataattaataggatctatggtg 10338905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 53624210 - 53624299
Alignment:
Q  143 gtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttt-taaaagaaaaatcaaacggttgaaattaaaataattaata 232  Q
    |||||||||||| |||||||||||||  ||||||||||| |||||||||| | ||| ||| |||||| |||| ||||| ||| ||||||||    
T  53624210 gtggtacatcgtaagataaaatagacacgtgtaatccaacggttctctttcttaaaaaaagatcaaaaggttaaaattgaaa-aattaata 53624299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 43174593 - 43174679
Alignment:
Q  110 aagatgaagaaaaggaaaaacat-ttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaa 197  Q
    ||||||||||| |||||||| |  |||||||||||| |||||| || ||||||||||||| || | ||||||||||| |||||||||||    
T  43174593 aagatgaagaagaggaaaaaaaagttaggtgttggtagtacat-gttagataaaatagacatgag-aatccaatggtcctcttttaaaa 43174679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 44602904 - 44602991
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaa-atcaaacggttgaaattaaaataattaataggatctgtggt 243  Q
    |||||||||||||  | |||||||||| ||| || ||| ||| |||| ||||||||||| ||||||||| |||||||||||||| ||||    
T  44602904 agataaaatagacacgcgtaatccaatagttatccttttaaataaaagatcaaacggtttaaattaaaa-aattaataggatctatggt 44602991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 49380005 - 49379869
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaa 207  Q
    |||||||||||||| ||| ||| | ||| |||||| ||   || ||| |||||||||| |  || |||||||||||   ||| ||| ||| ||| |||||    
T  49380005 agaagatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacatctgcgtaatccaatgaccctccttttaaaaaaatatcaa 49379906  T
Q  208 acggttgaaattaaaataattaataggatctgtggtg 244  Q
    || ||| |||||| ||||||||||||||||| |||||    
T  49379905 acagtttaaattagaataattaataggatctatggtg 49379869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 14745095 - 14745149
Alignment:
Q  190 ttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||| | | ||||||| ||| |||||||||||||||||||||||| |||||    
T  14745095 ttttaaaatatagatcaaacagtttaaattaaaataattaataggatctatggtg 14745149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 38242419 - 38242453
Alignment:
Q  199 aaaaatcaaacggttgaaattaaaataattaatag 233  Q
    ||||||||||||||| |||||||||||||||||||    
T  38242419 aaaaatcaaacggtttaaattaaaataattaatag 38242453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 50810719 - 50810808
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaa 197  Q
    ||||||||||||||  |||||  | |||| ||||| || | || ||| ||||||||||||| || ||||||||||||| ||| |||||||    
T  50810719 agaagatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggtcctcctttaaaa 50810808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 50865145 - 50865056
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaa 197  Q
    ||||||||||||||  |||||  | |||| ||||| || | || ||| ||||||||||||| || ||||||||||||| ||| |||||||    
T  50865145 agaagatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggtcctcctttaaaa 50865056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 54110164 - 54110232
Alignment:
Q  175 aatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||||  || ||| ||| |||||||||||| || ||||||||| |||||||||||||| |||||    
T  54110164 aatccaatggtcatcgttttaaaaaaaaatcaaacgatttaaattaaaa-aattaataggatctatggtg 54110232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 244
Target Start/End: Original strand, 53194425 - 53194561
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaa 207  Q
    |||||||||||||| ||||||  | ||| |||||  |||| |||||| ||||| |||| || || || ||| || | |  || ||| ||| ||| |||||    
T  53194425 agaagatgaagaaagggaaaaggaattaagtgttcatggttcatcgtaagatagaatacacatgcgtgatctaacgatcttcattttaaaaaaagatcaa 53194524  T
Q  208 acggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||| ||| ||||||||||||||| |||| |||||    
T  53194525 acggtttaaaataaaataattaatagaatctatggtg 53194561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 30858982 - 30859119
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctc-ttttaaaagaaaaatc 205  Q
    ||||||||||||||||||||||| ||| |||||||||||||| || || ||||||||||||||||| |||||||||||||||| ||||||||  ||||||    
T  30858982 tagaagatgaagaaaaggaaaaaaatt-aggtgttggtggtatattgtaagataaaatagacttgtctaatccaatggttctctttttaaaaagaaaatc 30859080  T
Q  206 aaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  30859081 aaacggtttaaattaaaataattaataggatctatggtg 30859119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 30911048 - 30910910
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttag-gtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatc 205  Q
    ||||||||||||||||||||||| |   |  |||||||||||||||||| ||||||||||||| ||  |||| ||||||||||||||||||  |||| ||    
T  30911048 tagaagatgaagaaaaggaaaaaaagaaaatgtgttggtggtacatcgtaagataaaatagacatgcctaattcaatggttctcttttaaagaaaaactc 30910949  T
Q  206 aaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  30910948 aaacggttgaaattaaaataattaataggatctatggtg 30910910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 107 - 236
Target Start/End: Complemental strand, 22048038 - 22047909
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctctttt--aaaagaaaaat 204  Q
    |||||||||||||||||||||||   |||||||||| |||||||| || ||||||||||||| | | |||| |||||||||||||||  |||| ||||||    
T  22048038 tagaagatgaagaaaaggaaaaaa--ttaggtgttgatggtacattgtaagataaaatagacctttctaattcaatggttctcttttcaaaaaaaaaaat 22047941  T
Q  205 caaacggttgaaattaaaataattaataggat 236  Q
    ||||||||| |||||||||||||| |||||||    
T  22047940 caaacggtttaaattaaaataattcataggat 22047909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 244
Target Start/End: Original strand, 36898791 - 36898930
Alignment:
Q  109 gaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctctttta----aaagaaaaat 204  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||||| || |||||||||||||  |||||||    ||| ||||||    
T  36898791 gaagatgaagaaaagaaaaaaaaattaggtgttggtggtacatcgtaagataaaatagacatgcgtaatccaatggtcatcttttagaagaaaaaaaaat 36898890  T
Q  205 caaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||| |||| ||| |||||||||||| || |||| |||||    
T  36898891 caaagggtttaaactaaaataattaacagaatctatggtg 36898930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 9220270 - 9220394
Alignment:
Q  108 agaagatgaagaaaaggaa-aaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatca 206  Q
    ||||||||||||||| ||| ||| | ||||||||||||  ||||||||  | |||||||||| |||||||||||| |||  ||||||||  |||||||||    
T  9220270 agaagatgaagaaaatgaataaaaagttaggtgttggtaatacatcgtatggtaaaatagacatgtgtaatccaacggtcgtcttttaag-gaaaaatca 9220368  T
Q  207 aacggttgaaattaaaataattaata 232  Q
    ||||||| ||||||||||||||||||    
T  9220369 aacggtttaaattaaaataattaata 9220394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 244
Target Start/End: Original strand, 4127089 - 4127202
Alignment:
Q  137 gtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctctttt------aaaagaaaaatcaaacggttgaaattaaaataattaa 230  Q
    |||||||||||||||| | ||||||||||||| |||| |||| ||||||||||||||      |||| |||||||||| |||| |||||||| |||||||    
T  4127089 gtgttggtggtacatcataagataaaatagacctgtgcaatctaatggttctcttttacaaaaaaaataaaaatcaaatggtttaaattaaattaattaa 4127188  T
Q  231 taggatctgtggtg 244  Q
     ||||||| |||||    
T  4127189 caggatctatggtg 4127202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 11262705 - 11262560
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttc---------tcttttaaaa 197  Q
    ||||||||||||||||||||||| ||| ||||||||||||||  | || ||||||||||||| ||| |||||||||  |||         | ||||||||    
T  11262705 tagaagatgaagaaaaggaaaaaaatt-aggtgttggtggtatgtagtaagataaaatagacctgtctaatccaatcattctttttttttttttttaaaa 11262607  T
Q  198 gaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
     ||| |||||| |||| |||||| ||||||||||||||||| |||||    
T  11262606 aaaagatcaaatggtttaaattataataattaataggatctatggtg 11262560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 1102873 - 1102785
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||| |||||  ||||||| ||||  || ||||||| ||| ||||||||||| |||||||||||||||||| ||||| |||||    
T  1102873 agataaaatacacttgcataatccactggtcatcatttaaaaaaaagatcaaacggtttaaattaaaataattaataagatctatggtg 1102785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 244
Target Start/End: Original strand, 13520640 - 13520748
Alignment:
Q  137 gtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctc-ttttaaaagaaaaatcaaacggttgaaattaaaataattaatagga 235  Q
    ||||||||| |||||| | ||||||||||||| |  ||||||||| ||||||| ||||| || ||||||| ||| ||| |||| ||| ||||||||||||    
T  13520640 gtgttggtgatacatcataagataaaatagaccttcgtaatccaacggttctctttttataaaaaaaatccaacagtttaaatcaaattaattaatagga 13520739  T
Q  236 tctgtggtg 244  Q
    ||| |||||    
T  13520740 tctatggtg 13520748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 15548478 - 15548423
Alignment:
Q  174 taatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaat 231  Q
    ||||||||||||||||||||||||  ||||||||| |||| |||||||||||||||||    
T  15548478 taatccaatggttctcttttaaaa--aaaatcaaatggtttaaattaaaataattaat 15548423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 10736018 - 10735930
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||| || || |||||| |||||| || |||||||| |  ||||| |||||| |||||||||||||||||| ||||| |||||    
T  10736018 agataaaatacacctgcgtaatcaaatggtccttttttaaaaaattaatcagacggtttaaattaaaataattaatatgatctatggtg 10735930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 11797395 - 11797461
Alignment:
Q  158 ataaaatagacttgtgtaatccaatggttctcttttaaaagaaa-aatcaaacggttgaaattaaaa 223  Q
    |||||||| || |||||||||||||||| ||||||||||| ||| |||| ||||||| |||||||||    
T  11797395 ataaaataaacatgtgtaatccaatggtcctcttttaaaaaaaataatctaacggttaaaattaaaa 11797461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 39604075 - 39604022
Alignment:
Q  190 ttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||| ||||||||||| ||| |||||||||||||||||||||||| |||||    
T  39604075 ttttaaaa-aaaaatcaaacagtttaaattaaaataattaataggatctatggtg 39604022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 17420474 - 17420526
Alignment:
Q  182 tggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaatagga 235  Q
    ||||||||||| |||| |||||||||||  || |||||||||||||||||||||    
T  17420474 tggttctctttaaaaa-aaaaatcaaacaatttaaattaaaataattaatagga 17420526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 109 - 244
Target Start/End: Complemental strand, 32255290 - 32255158
Alignment:
Q  109 gaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaa 208  Q
    |||||||||||||||||||||   |||||||||||||||||||||| |||| |||||||| ||| ||||||||||||| ||||||| || ||||||||||    
T  32255290 gaagatgaagaaaaggaaaaaa--ttaggtgttggtggtacatcgtaagattaaatagacctgtctaatccaatggttatcttttacaa-aaaaatcaaa 32255194  T
Q  209 cggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||||||||||||||||||||||| |||||    
T  32255193 cggttgaaattaaaataattaataggatctatggtg 32255158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 22537862 - 22537727
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatca 206  Q
    |||||||||||||||| |||||| | ||||||||||||||| |||||| ||||||||||||| ||  |||||||||||||| ||||||||  ||||||||    
T  22537862 tagaagatgaagaaaatgaaaaaaaattaggtgttggtggttcatcgtaagataaaatagacctgcataatccaatggttcccttttaaa--aaaaatca 22537765  T
Q  207 aacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  22537764 aacggtttaaattaaaataattaataggatctatggtg 22537727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 76 - 244
Target Start/End: Original strand, 13564020 - 13564187
Alignment:
Q  76 tgtgagttgaagatgatgaagatttataaggtagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgta 175  Q
    ||||||||||||||||||||||||  ||| |  ||||||||||||| ||||||  ||| |||||||||| ||||||| | || |||||||||| ||| ||    
T  13564020 tgtgagttgaagatgatgaagattattaaaggggaagatgaagaaagggaaaataatt-aggtgttggtagtacatcataagctaaaatagacatgtcta 13564118  T
Q  176 atccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||||||||||| ||| || |||| ||||||| |||||||||||||||||||||||| |||||    
T  13564119 atccaatggttctctttttaaaaaataatctaacggttcaaattaaaataattaataggatctatggtg 13564187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 11502235 - 11502369
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatca 206  Q
    |||||||||||||||||||||||   | |||||||||| |||||| || |||||||||| || ||  |||||||||||||||||||| |||  |||||||    
T  11502235 tagaagatgaagaaaaggaaaaaa--tcaggtgttggtcgtacat-gtaagataaaataaacctgcctaatccaatggttctctttttaaaagaaaatca 11502331  T
Q  207 aacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||| ||||||||||||||||| |||||||| |||||    
T  11502332 aacggctgaaattaaaataattactaggatctatggtg 11502369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 236
Target Start/End: Complemental strand, 46835980 - 46835851
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctctttt-aaaagaaaaatc 205  Q
    ||||||||||| |||||| |||| ||| || |||||||||||||||||  |||||||||||||||| |||| ||||  ||||||||| |||| ||||||     
T  46835980 tagaagatgaataaaagggaaaaaattaag-tgttggtggtacatcgtatgataaaatagacttgtctaatacaataattctcttttaaaaataaaaatt 46835882  T
Q  206 aaacggttgaaattaaaataattaataggat 236  Q
    || | ||| ||||||||||||||||||||||    
T  46835881 aatcagtttaaattaaaataattaataggat 46835851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 44372994 - 44372896
Alignment:
Q  147 tacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaa-atcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||| | ||||||||||||| ||||||||| |||||| ||||||||| | |||| |||||||||||  ||||||||||||||||||||||| |||||    
T  44372994 tacatcctaagataaaatagacatgtgtaatctaatggtcctcttttaagaaaaaagatcaaacggttttaattaaaataattaataggatctatggtg 44372896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 44381850 - 44381752
Alignment:
Q  147 tacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaa-atcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||| | ||||||||||||| ||||||||| |||||| ||||||||| | |||| |||||||||||  ||||||||||||||||||||||| |||||    
T  44381850 tacatcctaagataaaatagacatgtgtaatctaatggtcctcttttaagaaaaaagatcaaacggttttaattaaaataattaataggatctatggtg 44381752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 22336234 - 22336147
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||||||||||   |||| ||||||| |||||| ||| ||| ||||| |||||||||||||||||||||||||||||| |||||    
T  22336234 agataaaatagacttgcacaatctaatggttatctttttaaaaaaatatcaa-cggttgaaattaaaataattaataggatctatggtg 22336147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 16756125 - 16756039
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggt 243  Q
    |||||||||| ||||| |||||| |||||| ||| ||| ||| |||||||||| |||| |||||||||||||||||||||||| ||||    
T  16756125 agataaaatacacttgcgtaatctaatggtcctccttttaaa-aaaaatcaaatggttaaaattaaaataattaataggatctatggt 16756039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 25533523 - 25533478
Alignment:
Q  76 tgtgagttgaagatgatgaagatttataaggtagaagatgaagaaa 121  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||    
T  25533523 tgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaa 25533478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 43441601 - 43441522
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaatagga 235  Q
    |||||||||| ||||| |||||||||| ||  || ||||||| ||| ||||||| ||| | |||||||||||||||||||    
T  43441601 agataaaatacacttgcgtaatccaatagtcatcctttaaaaaaaatatcaaacagtttacattaaaataattaatagga 43441522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 35295920 - 35295866
Alignment:
Q  190 ttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||| | | ||||||||||| |||||||||||||||||||||||| |||||    
T  35295920 ttttaaaatatagatcaaacggtttaaattaaaataattaataggatctatggtg 35295866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 30334504 - 30334590
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||||||| || |||||||||  || |||  |||||| ||||||| ||||||| ||||||||| |||||||||||||| |||||    
T  30334504 agataaaatagacatgggtaatccaagcgtcctc-cttaaaaaaaaaatctaacggtttaaattaaaa-aattaataggatctatggtg 30334590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 41328440 - 41328386
Alignment:
Q  189 cttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||| ||| ||||||||||| |||||| ||||||||||||||||| |||||    
T  41328440 cttttaaaa-aaatatcaaacggtttaaattagaataattaataggatctatggtg 41328386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 244
Target Start/End: Original strand, 43460636 - 43460771
Alignment:
Q  109 gaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaa 208  Q
    ||||||||||||||||||||| | ||| |||||| |||| ||  || |||||||||| || |  || ||  || ||| |||  || ||  ||| ||||||    
T  43460636 gaagatgaagaaaaggaaaaaaagttaagtgttgatggttcaatgtaagataaaatatacctacgtgatttaacggtcctccatttaataaaagatcaaa 43460735  T
Q  209 cggttgaaattaaaataattaataggatctgtggtg 244  Q
     |||| |||||||||||||||||||||||| |||||    
T  43460736 gggtttaaattaaaataattaataggatctatggtg 43460771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 48312296 - 48312207
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttct-cttttaaaagaaaa-atcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||||||| || |||||||||||||  | ||||||||| |||| |||||||  || ||||||||| |||||||||||||| |||||    
T  48312296 agataaaatagacctgcgtaatccaatggtcatccttttaaaaaaaaagatcaaaccatttaaattaaaa-aattaataggatctatggtg 48312207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 3413889 - 3413832
Alignment:
Q  61 atgagtgttgatgggtgtgagttgaagatgatgaagatttataaggtagaagatgaag 118  Q
    |||| ||||||||  || |||||||||||||||||||||  |||| ||||||||||||    
T  3413889 atgaatgttgatgaatgggagttgaagatgatgaagattagtaagatagaagatgaag 3413832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 39981529 - 39981484
Alignment:
Q  199 aaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||||||||| |||||| |||||||||| |||||| |||||    
T  39981529 aaaaatcaaacggtttaaattagaataattaattggatctatggtg 39981484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 17837920 - 17837784
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaa 207  Q
    |||||||||||||||||| ||| | |||| ||||||||||||||||| ||||||||||||| ||  ||||||||||||| || |||  ||||||||||||    
T  17837920 agaagatgaagaaaaggacaaaaaattagatgttggtggtacatcgtaagataaaatagacctgcctaatccaatggttatcgtttttaagaaaaatcaa 17837821  T
Q  208 acggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||||||||||||||||||||||||| |||||    
T  17837820 acggttgaaattaaaataattaataggatctatggtg 17837784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 108 - 244
Target Start/End: Original strand, 29381542 - 29381678
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaa 207  Q
    |||||||||||||||||| ||| | |||| ||||||||||||||||| ||||||||||||| ||  ||||||||||||| ||||||  || |||||||||    
T  29381542 agaagatgaagaaaaggacaaaaaattagatgttggtggtacatcgtaagataaaatagacctgcctaatccaatggttatctttttgaaaaaaaatcaa 29381641  T
Q  208 acggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||||||||||||||||||||||||| |||||    
T  29381642 acggttgaaattaaaataattaataggatctatggtg 29381678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 18346563 - 18346690
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatca 206  Q
    |||||||||||||||| |||| | ||| |||||||||||||||||||| ||||||||||||||||  |||||||||||||  ||||||||| ||||||||    
T  18346563 tagaagatgaagaaaatgaaacaaatt-aggtgttggtggtacatcgtaagataaaatagacttgcataatccaatggtttacttttaaaa-aaaaatca 18346660  T
Q  207 aacggttgaaattaaaataattaataggat 236  Q
    ||||||| ||||||||||||||||||||||    
T  18346661 aacggtttaaattaaaataattaataggat 18346690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 5187433 - 5187570
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatca 206  Q
    ||||||||||||||||| ||||| | |||||||||| ||||||||  | ||||||||||||  ||  |||||||||| | ||||||||||| ||||||||    
T  5187433 tagaagatgaagaaaagaaaaaaaaattaggtgttgatggtacatgataagataaaatagagctgcttaatccaatgatgctcttttaaaataaaaatca 5187532  T
Q  207 aacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||| ||||||||||| |||||||||||||||| |||||    
T  5187533 aacagttgaaattaatataattaataggatctatggtg 5187570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 23392472 - 23392382
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaat--caaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||||||||||  ||||| ||||||| |||||||||| ||||||  |||||||||||||||||||||||||||||||||| |||||    
T  23392472 agataaaatagacttgcataatctaatggttatcttttaaaaaaaaaatatcaaacggttgaaattaaaataattaataggatctatggtg 23392382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 11723090 - 11722953
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctc-ttttaaaagaaaaatca 206  Q
    |||||||||||||| ||| ||| | ||| |||||| ||   || ||| ||| |||||| || ||||||||||||||   ||| |||||||| ||||||||    
T  11723090 agaagatgaagaaagggagaaataattaagtgttgttgactcaccgtaagagaaaatacacctgtgtaatccaatgaccctccttttaaaaaaaaaatca 11722991  T
Q  207 aacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||| |||||| ||||||||||||||||| |||||    
T  11722990 aacggtttaaattagaataattaataggatctatggtg 11722953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 232405 - 232316
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaa 197  Q
    ||||||||||||||  |||||  | |||| ||||| || | || ||| ||||||||||||| || ||||||||||||||||| |||||||    
T  232405 agaagatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggttctcctttaaaa 232316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 7311628 - 7311665
Alignment:
Q  199 aaaaatcaaacggttgaaattaaaataattaataggat 236  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  7311628 aaaaatcaaacggtttaaattaaaataattaataggat 7311665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 11967523 - 11967389
Alignment:
Q  108 agaagatgaagaaaaggaa--aaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaa--- 202  Q
    ||||||||||||||||| |  ||| | |||||||||| |||| || | | ||||||||| ||||||  ||||| ||||||  |||||| ||| ||||       
T  11967523 agaagatgaagaaaaggtacaaaaaaattaggtgttgatggtgcaccattagataaaat-gacttgcttaatcaaatggtcatctttttaaaaaaaatta 11967425  T
Q  203 atcaaacggttgaaattaaaataattaataggatct 238  Q
    ||||||| ||| |||||||||||||||||| |||||    
T  11967424 atcaaacagtttaaattaaaataattaatatgatct 11967389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 43386 - 43522
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatca 206  Q
    ||||||||||||||||||||||| | |||||||| |||| || ||||| ||||||||||||||||  ||||| |||||||||||||| ||| ||||||||    
T  43386 tagaagatgaagaaaaggaaaaaaaattaggtgtcggtgatatatcgttagataaaatagacttgcctaatcaaatggttctctttttaaa-aaaaatca 43484  T
Q  207 aacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  43485 aacggtttaaattaaaataattaataggatctatggtg 43522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 7707893 - 7707757
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatca 206  Q
    ||||||||||||||||| ||||| ||  | |||||| ||||||||||| ||||||||||||| ||  |||||||||||||||||||||||  ||||||||    
T  7707893 tagaagatgaagaaaagaaaaaaaata-atgtgttgatggtacatcgtaagataaaatagacctgcctaatccaatggttctcttttaaagaaaaaatca 7707795  T
Q  207 aacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||||||||||||||||||||||||| |||||    
T  7707794 aacggttgaaattaaaataattaataggatctatggtg 7707757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 244
Target Start/End: Original strand, 2312295 - 2312429
Alignment:
Q  106 gtagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatc 205  Q
    |||||||||||||||| | |||||   |||||||||||||||||||| | ||||||||||| | ||| |||||||||||||||||||| ||| |||||||    
T  2312295 gtagaagatgaagaaaggaaaaaa---ttaggtgttggtggtacatcataagataaaataggcctgtctaatccaatggttctctttttaaa-aaaaatc 2312390  T
Q  206 aaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||| ||| |||||||||||||||||||||||| |||||    
T  2312391 aaacagtttaaattaaaataattaataggatctatggtg 2312429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 44498762 - 44498628
Alignment:
Q  111 agatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaa-aagaaaaatcaaac 209  Q
    ||||||| |||||||| || ||||||||||||||| |||||| | ||||||||||||| || |||||| ||||||  |||||||| || |||||||||||    
T  44498762 agatgaaaaaaaggaagaaaatttaggtgttggtgatacatcctaagataaaatagacatgcgtaatctaatggtcatcttttaagaaaaaaaatcaaac 44498663  T
Q  210 ggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||  ||||||||||||||||||||||| |||||    
T  44498662 ggttttaattaaaataattaataggatctatggtg 44498628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 23202150 - 23202014
Alignment:
Q  107 tagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctc--ttttaaaagaaaaat 204  Q
    ||||||||||||||||| |||||   |||||||||||||||||||||| ||||||||||||| ||  |||| |||||||||||  ||||       ||||    
T  23202150 tagaagatgaagaaaagaaaaaa---ttaggtgttggtggtacatcgtaagataaaatagacctgcttaattcaatggttctctttttttttttttaaat 23202054  T
Q  205 caaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||| |||||||||||||||||||||| || |||||    
T  23202053 caaacggtcgaaattaaaataattaataggacctatggtg 23202014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 56085650 - 56085514
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaa 207  Q
    |||||||||||||| | | ||| | ||| |||||| |||| ||  || |||||||||| || ||||| |||||| |||  || ||| ||| |||||||||    
T  56085650 agaagatgaagaaaggaataaagaattaagtgttgatggttcactgtaagataaaatacacatgtgtgatccaacggtcatccttttaaaaaaaaatcaa 56085551  T
Q  208 acggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||| |||||||||||||||||||||||| |||||    
T  56085550 acggtttaaattaaaataattaataggatctatggtg 56085514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 1520114 - 1519977
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctc-ttttaaaagaaaaatca 206  Q
    |||||||||||||| ||| | | | |||||||||| || | || ||| |||||||||| ||||  |||||| ||||||  || ||||||||  | |||||    
T  1520114 agaagatgaagaaagggagacataattaggtgttgttgattcaccgtaagataaaatacacttacgtaatctaatggtcatccttttaaaaatataatca 1520015  T
Q  207 aacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  1520014 aacggtttaaattaaaataattaataggatctatggtg 1519977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 244
Target Start/End: Original strand, 26496122 - 26496258
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaa 207  Q
    |||||||||||||| ||| ||| | ||| |||||| ||   || ||| |||||||||| |  ||||||||||||||   ||| ||| ||| ||| |||||    
T  26496122 agaagatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacatctgtgtaatccaatgaccctcattttaaaaaaatatcaa 26496221  T
Q  208 acggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||| |||||| ||||||||||||||||| |||||    
T  26496222 acggtttaaattagaataattaataggatctatggtg 26496258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 27847979 - 27847895
Alignment:
Q  108 agaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttt 192  Q
    |||||||||||||||||||||| | ||||||| | |||||||||  | ||||||||||||| ||||||||| || ||| ||||||    
T  27847979 agaagatgaagaaaaggaaaaaaagttaggtggtagtggtacattataagataaaatagacatgtgtaatctaacggtcctcttt 27847895  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 36845665 - 36845577
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||| || || |||||||||||||  |||||||||| ||| ||||||| ||| | ||||||||||||||||||| || |||||    
T  36845665 agataaaatacacctgcgtaatccaatggtcatcttttaaaaaaaatatcaaacagtttacattaaaataattaataggacctatggtg 36845577  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 38555138 - 38555216
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaa--aagaaaaatcaaacggttgaaattaaaataattaata 232  Q
    ||||||||||||| |||||||||||||||||||| |||||  || ||| ||||||||||| ||||||||| | ||||||    
T  38555138 agataaaatagacatgtgtaatccaatggttctcctttaaataaaaaagatcaaacggtttaaattaaaaaatttaata 38555216  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 34326989 - 34326900
Alignment:
Q  149 catcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatct 238  Q
    |||||| |||||||||| ||||| ||||| ||||||| ||| || |||| ||||  |||||| || ||||| ||||||||||||||||||    
T  34326989 catcgtaagataaaatacacttgcgtaattcaatggtcctcgttaaaaaaaaaatacaaacgattaaaatttaaataattaataggatct 34326900  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 19750188 - 19750243
Alignment:
Q  189 cttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||| ||| |||||||| || |||||||||||||||||||||||| |||||    
T  19750188 cttttaaaaaaaagatcaaacgatttaaattaaaataattaataggatctatggtg 19750243  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 19789618 - 19789563
Alignment:
Q  189 cttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||| ||| |||||||| || |||||||||||||||||||||||| |||||    
T  19789618 cttttaaaaaaaagatcaaacgatttaaattaaaataattaataggatctatggtg 19789563  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 27850816 - 27850886
Alignment:
Q  176 atccaatggttctcttttaaaagaaaa--atcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||| | ||| ||||||| ||||  ||||||||||| |||||||||||||||||||||||| |||||    
T  27850816 atccaatgatcctcctttaaaaaaaaagaatcaaacggtttaaattaaaataattaataggatctatggtg 27850886  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 49896468 - 49896527
Alignment:
Q  180 aatggttctcttttaaaagaaaa-atcaaacggttgaaattaaaataattaataggatct 238  Q
    |||||||||||||||| | |||| ||||||||||| |||||||||||||||| |||||||    
T  49896468 aatggttctcttttaataaaaaatatcaaacggtttaaattaaaataattaacaggatct 49896527  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 52138692 - 52138742
Alignment:
Q  194 aaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||| |||||    
T  52138692 aaaaaaaaaatcaaacggtttaaattagaataattaataggatctatggtg 52138742  T

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Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 23103869 - 23103957
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctc-ttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||||||  | |||||||||| ||| || |||||||  ||| ||||||||||| ||||||||| |||||||||||||| |||||    
T  23103869 agataaaatagacacgcgtaatccaatagttatccttttaaatcaaagatcaaacggtttaaattaaaa-aattaataggatctatggtg 23103957  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 238
Target Start/End: Original strand, 41349339 - 41349471
Alignment:
Q  108 agaagatgaagaaaaggaa-aaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaa-aatc 205  Q
    ||||||||||||||| | | ||| | |||||||||| | || || | | ||||| ||||||| ||  ||||| |||||| ||||||||||| ||| ||||    
T  41349339 agaagatgaagaaaatgtacaaaaaattaggtgttgatagtgcaccattagatagaatagacctgcataatcaaatggtcctcttttaaaaaaaataatc 41349438  T
Q  206 aaacggttgaaattaaaataattaataggatct 238  Q
    |||||||| |||| ||||| ||||||| |||||    
T  41349439 aaacggtttaaataaaaatgattaatatgatct 41349471  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 13165718 - 13165675
Alignment:
Q  188 tcttttaaaagaaaaatcaaacggttgaaattaaaataattaat 231  Q
    |||||||||| ||| ||||||||||| |||||||||||||||||    
T  13165718 tcttttaaaaaaaagatcaaacggtttaaattaaaataattaat 13165675  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 45535300 - 45535212
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaa-atcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||||||  | |||||||||| ||| || ||| ||| |||| ||||||| ||| ||||||||| |||||||||||||| |||||    
T  45535300 agataaaatagacacgcgtaatccaatagttatccttttaaataaaagatcaaacagtttaaattaaaa-aattaataggatctatggtg 45535212  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 52240090 - 52240045
Alignment:
Q  199 aaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||||||||| |||||||||  ||||||||||||| |||||    
T  52240090 aaaaatcaaacggtttaaattaaaaatattaataggatctatggtg 52240045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 26630045 - 26629957
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||||||||| || |  |||||| ||||||  || ||||||| ||| ||||||| ||| | ||||||||||||||||||| || |||||    
T  26630045 agataaaatacacctacgtaatctaatggtcatcctttaaaaaaaagatcaaacagtttacattaaaataattaataggacctatggtg 26629957  T

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Target: scaffold0077 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 244
Target Start/End: Original strand, 53997 - 54132
Alignment:
Q  106 gtagaagatgaagaaaaggaaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatc 205  Q
    |||||||||||| |||||||||||   | ||||||||||||||||||||  |||||||||||||||  ||||||||||   |||||||  || |||||||    
T  53997 gtagaagatgaacaaaaggaaaaa---tcaggtgttggtggtacatcgtatgataaaatagacttgcttaatccaatgacactcttttttaaaaaaaatc 54093  T
Q  206 aaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    |||| ||| |||||||||||||||||||||||| |||||    
T  54094 aaacagtttaaattaaaataattaataggatctatggtg 54132  T

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Target: scaffold0219 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 8000 - 8128
Alignment:
Q  108 agaagatgaagaaaagg---aaaaacatttaggtgttggtggtacatcgtgagataaaatagacttgtgtaatccaatggttctcttttaaaagaaa-aa 203  Q
    ||||||||||||||||    ||||| | |||||||||| |||| || | | ||||||||||||||||  | ||| |||||| ||||||||||| ||| ||    
T  8000 agaagatgaagaaaagataaaaaaaaaattaggtgttgatggtgcaccattagataaaatagacttgcatgatcaaatggtcctcttttaaaaaaaacaa 8099  T
Q  204 tcaaacggttgaaattaaaataattaata 232  Q
    |||||||||| ||||||||||||||||||    
T  8100 tcaaacggtttaaattaaaataattaata 8128  T

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Target: scaffold2071 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 446 - 506
Alignment:
Q  61 atgagtgttgatgggtgtgagttgaagatgatgaagatttataaggtagaagatgaagaaa 121  Q
    |||| ||||||||  ||||||||||||||||||||||||  ||||||||||||||||||||    
T  446 atgaatgttgatgaatgtgagttgaagatgatgaagattagtaaggtagaagatgaagaaa 506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 127688 - 127600
Alignment:
Q  156 agataaaatagacttgtgtaatccaatggttctcttttaaaagaaaaatcaaacggttgaaattaaaataattaataggatctgtggtg 244  Q
    ||||||||||||| ||| ||||| ||| |||||| ||| ||| ||||||| ||||||| |||||||||  ||||||||||||| |||||    
T  127688 agataaaatagacctgtttaatctaatcgttctccttttaaaaaaaaatctaacggtttaaattaaaaacattaataggatctatggtg 127600  T

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Target: scaffold0128 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 23047 - 23086
Alignment:
Q  82 ttgaagatgatgaagatttataaggtagaagatgaagaaa 121  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  23047 ttgaagatgatgaagattaataaggttgaagatgaagaaa 23086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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