View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1137_low_165 (Length: 266)
Name: NF1137_low_165
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_165 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 73 - 244
Target Start/End: Complemental strand, 18925524 - 18925353
Alignment:
| Q |
73 |
tgaattagactgtatgtgtataagtatatgcatacctgtgctgcattgttgaaagctggaagaatgtcgccattattgtacgacataattatggtttctt |
172 |
Q |
| |
|
||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18925524 |
tgaattagactttatgtctataagtgtaagcatacctgtgctgcattgttgaaagctggaagaatgtcgccattattgtatgacataattatggtttctt |
18925425 |
T |
|
| Q |
173 |
ctagtgacttcccatctagatctgttccttcaatttgcttgttcaagttatctacataagctctgtggtgct |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18925424 |
ctagtgacttcccatctagatctgttccttcaatttgcttgttcaagttatctacataagctctgtggtgct |
18925353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 412133 - 412161
Alignment:
| Q |
45 |
ctacacccaactgttttgtctcattcctt |
73 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
412133 |
ctacacccaactgttttgtctcattcctt |
412161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University