View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_167 (Length: 265)
Name: NF1137_low_167
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_167 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 53901864 - 53902078
Alignment:
| Q |
30 |
gaatcaaagcttgcaaatttgaaatctcttctagattcacaatcacattctgacattgcaatcctatgacctggaatcaaaggtaaaacannnnnnnnnn |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53901864 |
gaatcaaagcttgcaaatttgaaatctcttctagattcacaatcacattctgacattgcaatcctatgacctggaatcaaaggtaaaacattcttcttct |
53901963 |
T |
|
| Q |
130 |
nnnnnnngctcaattgctgctttattggagttctaattggtacctgcaatgatgaagtttcatccataatataagcaaatgatcccattgaaaaacacct |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53901964 |
tctt---gctcaattgctgctttattggagttctaattggtacctgcaatgatgaagtttcatccataatataagcaaatgatcccattgaaaaacacct |
53902060 |
T |
|
| Q |
230 |
tctgttatccatattgtt |
247 |
Q |
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||||||||||| |||||| |
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| T |
53902061 |
tctgttatccacattgtt |
53902078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 3958619 - 3958405
Alignment:
| Q |
30 |
gaatcaaagcttgcaaatttgaaatctcttctagattcacaatcacattctgacattgcaatcctatgacctggaatcaaaggtaaaacannnnnnnnnn |
129 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
3958619 |
gaataaaagcttgcaaatttgaaatctcttctagattcacaatcacattctgacattgcaatcctgtgacctggaatcaaaggcaaaacattcttcttct |
3958520 |
T |
|
| Q |
130 |
nnnnnnngctcaattgctgctttattggagttctaattggtacctgcaatgatgaagtttcatccataatataagcaaatgatcccattgaaaaacacct |
229 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3958519 |
tctta---ctcaactgctgcttcattggagttctaattggtacctgcaatgatgaagtttcatccataatataagcaaatgatcccattgaaaaacacct |
3958423 |
T |
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| Q |
230 |
tctgttatccatattgtt |
247 |
Q |
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||||||||||| |||||| |
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| T |
3958422 |
tctgttatccacattgtt |
3958405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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