View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_173 (Length: 252)
Name: NF1137_low_173
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_173 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: scaffold0259 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 19345 - 19116
Alignment:
| Q |
1 |
ccctttctttactgaatagacagttgagtattcaattttccaagtgaaatcataaaaaatgtcgtttctactttaacgaatttcattgtcaaatattaat |
100 |
Q |
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| T |
19345 |
ccctttctttattgaatagacagttgagtattcaattttccaagtgaaatcataaaaaatgtcgtttctactttaacgaatttcattgtcaaatat---- |
19250 |
T |
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| Q |
101 |
atataaaaatggaaagtacgaatggaaaatataccatttaactcggcacacttttcttcaatttcatgtttgaactagagaatgtattcactactaacat |
200 |
Q |
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| T |
19249 |
--ataaaaatggaaagtacgaatggaaaatataccatttaactcggcacacttttcttcaatttcatgtttgaactagagaatgtattcactactaacat |
19152 |
T |
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| Q |
201 |
ccatgttatttaaagttgctgcaatatccatccctg |
236 |
Q |
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| T |
19151 |
ccatgttatttaaagttgctgcaatatccgtccctg |
19116 |
T |
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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 228
Target Start/End: Original strand, 49067279 - 49067407
Alignment:
| Q |
100 |
tatataaaaatggaaagtacgaatggaaaatataccatttaactcggcacacttttcttcaatttcatgtttgaactagagaatgtattcactactaaca |
199 |
Q |
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| T |
49067279 |
tatatataaacggaaggtactaatgaaaaatataccacctacctcagcacactgttcttcaatttcatgtttcaacttgagaacatattcactgctaaca |
49067378 |
T |
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| Q |
200 |
tccatgttatttaaagttgctgcaatatc |
228 |
Q |
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| T |
49067379 |
tccatgttatttaaagccgctgcaatatc |
49067407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 31989857 - 31989775
Alignment:
| Q |
154 |
ttcttcaatttcatgtttgaactagagaatgtattcactactaacatccatgttatttaaagttgctgcaatatccatccctg |
236 |
Q |
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| T |
31989857 |
ttcttcaatttgatgtttcaacttgagaacatattcactactaacatccatgttatttaaagcagttgcaatatccatccctg |
31989775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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