View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_178 (Length: 251)
Name: NF1137_low_178
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_178 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 45415102 - 45415340
Alignment:
| Q |
1 |
atatgttgaattagcatagtgttcaagacatgttggtggattgcaaatggaaacatgttttcataaattcgtttagagacttcactagactttaattttc |
100 |
Q |
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| T |
45415102 |
atatgttgaattagcatagtgttcaagacatgttagtggattgcaaatggaaacatgttttcataaattcgtttagagacttcactagactttaattttc |
45415201 |
T |
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| Q |
101 |
taatgcaaattcatcaaaattgattaaaagaacactattaaagaataaattgaccgtcttcaatttcaaatgtttatttatgatttggtaagtttagaag |
200 |
Q |
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| T |
45415202 |
taatgcaaattcatcaaaattgattaaatgaacactattaaagaataaattgaccgtcttcaattttaaatgattatttatgatttggtaagtttaaaag |
45415301 |
T |
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| Q |
201 |
aggaaattgtcttcaaaaatgaattgtatagtcggcctt |
239 |
Q |
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| T |
45415302 |
aggaaattgtcttcaaaaatgaattgtatagtcgacctt |
45415340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 26830867 - 26831076
Alignment:
| Q |
1 |
atatgttgaattagcatagtgttcaagacatgttggtggattgcaaatggaaacatgttttcataaattcgtttagagacttcactagactttaattttc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26830867 |
atatattgaattagcatagtgttcaagacatgttagtggattggaaatggaaacatgttttcataaattcgtttagagacttcagtagactttaattttc |
26830966 |
T |
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| Q |
101 |
taatgcaaattcatcaaaattgattaaaagaacactattaaagaataaattgaccgtcttcaatttcaaatgtttatttatgatttggtaagtttagaag |
200 |
Q |
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|||||||||||| ||| |||| ||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26830967 |
taatgcaaattc-tcataattaattaatagaacactattaaagaataaattgactgtcctcaatttcaaatgtttatttatgatttggtaagtttaaaag |
26831065 |
T |
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| Q |
201 |
aggaaattgtc |
211 |
Q |
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| T |
26831066 |
aggaaattgtc |
26831076 |
T |
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