View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1137_low_18 (Length: 629)
Name: NF1137_low_18
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 13 - 532
Target Start/End: Original strand, 9947694 - 9948217
Alignment:
| Q |
13 |
aatatatagatttaggatttaaatttgagggtggtgaccacaacaggactcctaatcacatgactcacatccatccaagttagatatccgaaatccaatt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9947694 |
aatatatagatttaggatttaaatttgagggtggtgaccacaacaggactcctaaccacatgactcacatccatccaagttagatatccgaaatccaatt |
9947793 |
T |
|
| Q |
113 |
tctttaatcttgtcatgcttccaacttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9947794 |
tctttaatcttgtcatgcttccaacttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttgggataacactgacatg |
9947893 |
T |
|
| Q |
213 |
aaaccctttgataggagtaatgttggcaacataaactgtttatgcctcatcaacattggtcactgttttgtggaactcttgtattctcctccaagaagaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9947894 |
aaaccctttgataggagtaatgttggcaacataaactgtttatgcctcaccaacattggtcactgttttgtggaactcttgtattctcctccaagaagaa |
9947993 |
T |
|
| Q |
313 |
tttccaccattgaagaaagcaataaaagaagggtggttaatatccaatgaaggtttagagcaa----tgaatgtggatcttgtaatgctagtgatatgtt |
408 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
9947994 |
tttccaccattgaagaaagcaataaaaaaagggtggttaatatccaatgaaggtttagagcaatcattgaatgtggatcttgtaatggtagtgatatgtt |
9948093 |
T |
|
| Q |
409 |
tctgtgtgaagttaagtccatagagaagattaacataatcttgtgcaccaacgtcataaagaagaccggggtcaagtgctctagtagtatcaacataact |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9948094 |
tctgtgtgaagttaagtccatagagaagattaacataatcttgtgcaccaacgtcataaagaagaccggggtcaagcgctctagtagtatcaacataact |
9948193 |
T |
|
| Q |
509 |
agctcctaatgcaagaggagttgc |
532 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
9948194 |
agctcctaatgcaagaggagttgc |
9948217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 48 - 534
Target Start/End: Complemental strand, 8958812 - 8958322
Alignment:
| Q |
48 |
gaccacaacaggactcctaatcacatgactcacatccatccaagttagatatccgaaatccaatttctttaatcttgtcatgcttccaacttcattcctc |
147 |
Q |
| |
|
|||||||| ||||| |||| |||||| || |||||||||||||||||| || ||| ||| |||||| | | ||||| | ||| | |||||| ||||| |
|
|
| T |
8958812 |
gaccacaattggacttctaaccacatgcttcgtatccatccaagttagatacccaaaagccactttcttcatttttgtcgttcttgccacttcaatcctc |
8958713 |
T |
|
| Q |
148 |
aacttaaatcttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttgataggagtaatgttggcaacataaa |
247 |
Q |
| |
|
||||| | ||||| |||||||||||||||| ||| |||||||||||| ||||||||||||||| ||||||| | |||||||| | | |||||||| |
|
|
| T |
8958712 |
aacttgtagcttagtttctcattcttctcattgaataccaacttgtttgggataacactgacatggaacccttcaacctgagtaatgctagaaacataaa |
8958613 |
T |
|
| Q |
248 |
ctgtttatgcctcatcaacattggtcactgttttgtggaactcttgtattctcctccaagaagaatttccaccattgaagaaagcaataaaagaagggtg |
347 |
Q |
| |
|
|||||| | ||||| |||||||||| | |||| | || || ||||| || |||| |||||||||| ||| || |||||| |||||||||||||||| |
|
|
| T |
8958612 |
ctgtttctccctcaccaacattggtaattgttctatgaaattcttgggttgtccttgaagaagaattcccattatcgaagaatgcaataaaagaagggta |
8958513 |
T |
|
| Q |
348 |
gttaatatccaatgaaggtttagagcaatga----atgtggatcttgtaatgctagtgatatgtttctgtgtgaagttaagtccatagagaagattaaca |
443 |
Q |
| |
|
||||| |||||| ||||||| |||||||| | | | |||||||| ||| |||||| | ||| |||| | || ||||| || | |||||||||||| |
|
|
| T |
8958512 |
gttaagatccaaagaaggttcagagcaatcattcgaagaagatcttgtgatggcagtgatgtttttttgtgagtagctaagtgcacaaagaagattaaca |
8958413 |
T |
|
| Q |
444 |
taatcttgtgcaccaacgtcataaagaagaccggggtcaagtgctctagtagtatcaacataactagctcctaatgcaagaggagttgctg |
534 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||| ||||||||||||||| | | || ||||| || |||||| ||||||| ||||||||||| |
|
|
| T |
8958412 |
taatcttgtacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaaaaggagttgctg |
8958322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 137 - 532
Target Start/End: Original strand, 8945347 - 8945746
Alignment:
| Q |
137 |
cttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttgataggagtaatgtt |
236 |
Q |
| |
|
||||| |||||||||| | |||||| |||||||||||| || ||||| |||||| ||| |||| |||| ||| | | |||| | ||| ||||| | |
|
|
| T |
8945347 |
cttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggatagcactaacacggtatccttcaacaggcataatgct |
8945446 |
T |
|
| Q |
237 |
ggcaacataaactgtttatgcctcatcaacattggtcactgttttgtggaactcttgtattctcctccaagaagaatttccaccattgaagaaagcaata |
336 |
Q |
| |
|
|||||||||| | || | ||||| |||||||||| |||||| |||| || ||||| || ||| |||||||||||||| ||||||| ||||| ||| |
|
|
| T |
8945447 |
agcaacataaatggcttgtccctcaccaacattggtaactgttctgtgaaattcttggatggcccttgaagaagaatttccagcattgaaaaaagctata |
8945546 |
T |
|
| Q |
337 |
aaagaagggtggttaatatccaatgaaggtttagagcaat----gaatgtggatcttgtaatgctagtgatatgtttctgtgtgaagttaagtccataga |
432 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||||| |||| ||| | |||||||||||| ||||||| | ||| ||||||||||||||| || | | |
|
|
| T |
8945547 |
aaagaagggtaattaagatccaaggaaggtttagaacaatcattgaaagaggatcttgtaatcgtagtgatgtttttttgtgtgaagttaagtgcacaaa |
8945646 |
T |
|
| Q |
433 |
gaagattaacataatcttgtgcaccaacgtcataaagaagaccggggtcaagtgctctagtagtatcaacataactagctcctaatgcaagaggagttgc |
532 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||| | | ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
8945647 |
gaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggatcaacataaccagctcccaatgcaagaggagttgc |
8945746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 157 - 488
Target Start/End: Complemental strand, 8963717 - 8963382
Alignment:
| Q |
157 |
cttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttgataggagtaatgttggcaacataaactgtttatg |
256 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | ||| ||||||| ||||| || |||| || ||||||||| | ||||||||||| |||| | |
|
|
| T |
8963717 |
cttagcttctcattcttctcattgaacaccaacctatttggaataacaccgacattgaagccttcaattggagtaatgctagcaacataaaccgtttgtc |
8963618 |
T |
|
| Q |
257 |
cctcatcaacattggtcactgttttgtggaactcttgtattctcctccaagaagaatttccaccattgaagaaagcaataaaagaagggtggttaatatc |
356 |
Q |
| |
|
| ||| |||||||||| ||||| |||| || ||||| | |||| ||||||||||||| | ||||| ||||||||||||||||||| ||| | || |
|
|
| T |
8963617 |
cttcaccaacattggtaactgtcctgtgaaattcttgggctgtccttggagaagaatttccagcgttgaaaaaagcaataaaagaagggtagttgagatg |
8963518 |
T |
|
| Q |
357 |
caatgaaggtttagagcaatga----atgtggatcttgtaatgctagtgatatgtttctgtgtgaagttaagtccatagagaagattaacataatcttgt |
452 |
Q |
| |
|
||| ||||| ||||| |||| | ||| |||||||| ||| ||| || ||||| ||||||||||||||| || | |||| |||||||||||||||| |
|
|
| T |
8963517 |
caaggaaggattagaacaatcattggatgatgatcttgttatggcagtaatgtgtttttgtgtgaagttaagtgcacaaagaaaattaacataatcttgt |
8963418 |
T |
|
| Q |
453 |
gcaccaacgtcataaagaagaccggggtcaagtgct |
488 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||||| |
|
|
| T |
8963417 |
acaccaatatcataaacaagaccagggtcaagtgct |
8963382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 137 - 488
Target Start/End: Complemental strand, 8975133 - 8974778
Alignment:
| Q |
137 |
cttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttgataggagtaatgtt |
236 |
Q |
| |
|
||||| |||||||||| | |||| ||||| || |||| || |||||||||||| ||| |||||| || ||||| ||||||| ||| ||||||||| |
|
|
| T |
8975133 |
cttcaatcctcaacttgtagcttaatttctcgtttttcttattgaacaccaacttatttgggataactctaacatggaacccttcgattcgagtaatgtg |
8975034 |
T |
|
| Q |
237 |
ggcaacataaactgtttatgcctcatcaacattggtcactgttttgtggaactcttgtattctcctccaagaagaatttccaccattgaagaaagcaata |
336 |
Q |
| |
|
|||||||||| | || | | | | |||||||||| | |||| | || || ||||| | |||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
8975033 |
agcaacataaatcgattttccttgaccaacattggtaattgttctatgaaattcttgggtggtccttgaagaagaatttgcagcattgaagaaagcaata |
8974934 |
T |
|
| Q |
337 |
aaagaagggtggttaatatccaatgaaggtttagagcaatgaat----gtggatcttgtaatgctagtgatatgtttctgtgtgaagttaagtccataga |
432 |
Q |
| |
|
|||||||||| || | |||||| ||||||||||| |||| | | | |||||||||||| ||||||| | ||| ||||||||||| ||| || | | |
|
|
| T |
8974933 |
aaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtgatgtttttttgtgtgaagttgagtgcacaaa |
8974834 |
T |
|
| Q |
433 |
gaagattaacataatcttgtgcaccaacgtcataaagaagaccggggtcaagtgct |
488 |
Q |
| |
|
||||||| |||||||||||| ||||||| ||||||| ||| || |||| ||||||| |
|
|
| T |
8974833 |
gaagattgacataatcttgtacaccaacatcataaacaagtccagggttaagtgct |
8974778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 9949258 - 9949336
Alignment:
| Q |
169 |
ttcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttgataggagtaatgttggcaacataaa |
247 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||| ||||||||| |||||||| |
|
|
| T |
9949258 |
ttcttctcatggaacaccaacttgtttggaataacacatacatgaatacctttaataggtataatgttggtaacataaa |
9949336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 29 - 534
Target Start/End: Original strand, 34962022 - 34962531
Alignment:
| Q |
29 |
atttaaatttgagggtggtgaccacaacaggactcctaatcacatgactcacatccatccaagttagatatccgaaatccaatttctttaatcttgtcat |
128 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||| ||| ||| |||||||||| ||||||| |
|
|
| T |
34962022 |
atttcaatttgagggtggtgaccacaataggactcctaacaacatgcttcacatccatccatgttagatatccaaaagccactttctttaattttgtcat |
34962121 |
T |
|
| Q |
129 |
gcttccaacttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttgatagga |
228 |
Q |
| |
|
||| |||||||| ||||||| || | |||||||||||||||||||||| |||||||| |||||| ||||||| ||||| |||||||||| || ||| |
|
|
| T |
34962122 |
acttgcaacttcaatcctcaatttgtagcttagcttctcattcttctcattaaacaccaaattgtttgggataacagtgacacgaaaccctttaattgga |
34962221 |
T |
|
| Q |
229 |
gtaatgttggcaacataaactgtttatgcctcatcaacattggtcactgttttgtggaactcttgtattctcctccaagaagaatttccaccattgaaga |
328 |
Q |
| |
|
| |||| | |||||||||| || || | | ||| |||||||||| |||||| | | || |||||||| ||| |||||||||||||| ||||||| | |
|
|
| T |
34962222 |
gcaatgctagcaacataaattgcttgtccgtcaccaacattggtaactgttctacgaaattcttgtatcggccttgaagaagaatttccatcattgaaaa |
34962321 |
T |
|
| Q |
329 |
aagcaataaaagaagggtggttaatatccaatgaaggtttagagcaa----tgaatgtggatcttgtaatgctagtgatatgtttctgtgtgaagttaag |
424 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| ||||||||||| ||| || | | ||||||||| ||| ||||||| | ||| |||| | | ||||| |
|
|
| T |
34962322 |
aagcaataaaagaagggtagttaagatccaaggaaggtttagaacaatcattggaagaggatcttgtgatggtagtgatgtttttttgtgagtatttaag |
34962421 |
T |
|
| Q |
425 |
tccatagagaagattaacataatcttgtgcaccaacgtcataaagaagaccggggtcaagtgctctagtagtatcaacataactagctcctaatgcaaga |
524 |
Q |
| |
|
| || | |||||||| |||||||||||| ||||||| ||||||| |||||| ||||||||||||||| ||| || ||||| || |||||| ||||||| | |
|
|
| T |
34962422 |
tgcacaaagaagattcacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattaggattaacatgaccagctcccaatgcaaaa |
34962521 |
T |
|
| Q |
525 |
ggagttgctg |
534 |
Q |
| |
|
|| ||||||| |
|
|
| T |
34962522 |
ggtgttgctg |
34962531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 247
Target Start/End: Original strand, 25927829 - 25928028
Alignment:
| Q |
43 |
gtggtgaccacaacaggactcctaatcacatgactcacatccatccaagttagatatccgaaatccaatttctttaatcttgtcatgcttccaacttcat |
142 |
Q |
| |
|
||||||||||||||||||||||||| ||| || | | |||||||||||||| |||||| ||| | | ||| ||||| |||| | ||| || | | |
|
|
| T |
25927829 |
gtggtgaccacaacaggactcctaaccacgtgctttaaatccatccaagttaaatatccaaaagctactttaattaatattgtagttcttgcatc----t |
25927924 |
T |
|
| Q |
143 |
tcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttgataggagtaatgttggcaac |
242 |
Q |
| |
|
|||| ||||| | | ||| ||||||||||||||||| ||||| ||||||||| ||||||||| ||| |||| ||||| |||| | ||||| | ||||| |
|
|
| T |
25927925 |
tccttaactttagt-ttaacttctcattcttctcattaaacactaacttgtttgggataacactaacacgaaaacctttaatagcaataatgctagcaac |
25928023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 307 - 534
Target Start/End: Original strand, 21686680 - 21686911
Alignment:
| Q |
307 |
gaagaatttccaccattgaagaaagcaataaaagaagggtggttaatatccaatgaaggtttagagcaat----gaatgtggatcttgtaatgctagtga |
402 |
Q |
| |
|
|||||||| | | ||||| ||||||||||||||||||||| ||||| ||| || |||||||||||||||| ||| | |||||||||||| | ||| |
|
|
| T |
21686680 |
gaagaattacgagcattggagaaagcaataaaagaagggtagttaagatctaaggaaggtttagagcaatcattgaaagaagatcttgtaatggcactga |
21686779 |
T |
|
| Q |
403 |
tatgtttctgtgtgaagttaagtccatagagaagattaacataatcttgtgcaccaacgtcataaagaagaccggggtcaagtgctctagtagtatcaac |
502 |
Q |
| |
|
| | ||| ||||||||||||||| || | |||||||||| |||||||||| |||| | ||||||| |||||| || |||||||||||| ||| | || |
|
|
| T |
21686780 |
tgtttttttgtgtgaagttaagtgcacaaagaagattaatataatcttgtacaccgatatcataaacaagaccaggatcaagtgctctattagggttaat |
21686879 |
T |
|
| Q |
503 |
ataactagctcctaatgcaagaggagttgctg |
534 |
Q |
| |
|
|| || |||||| ||||||| ||||||||||| |
|
|
| T |
21686880 |
atgaccagctcccaatgcaaaaggagttgctg |
21686911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 49008841 - 49008783
Alignment:
| Q |
181 |
aacaccaacttgtttaagataacactgacatgaaaccctttgataggagtaatgttggc |
239 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| ||||||| ||||| ||||||||||| |
|
|
| T |
49008841 |
aacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgttggc |
49008783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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