View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_181 (Length: 249)
Name: NF1137_low_181
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_181 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 76 - 245
Target Start/End: Original strand, 38024255 - 38024429
Alignment:
| Q |
76 |
ggtacaaaggtgactgaatgttttattaggctaataaatgtaaaataattgannnnnnnnnnnnnnna------gtggccggggtttgaatccggacctt |
169 |
Q |
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| T |
38024255 |
ggtacaaaggtgactgaatgttttattaggctaataaatgtaaaataattgattttttttaatttttttttgtggtggccggggtttgaatccggacctt |
38024354 |
T |
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| Q |
170 |
gcatataacctattattagtacagttctaatcacattcgtgacaattgtcagaataaattcattacctaaacatct |
245 |
Q |
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| T |
38024355 |
gcatataacctattat-agtacagttctaatcacattcgtgacaatggtcagaataaattcatgacctaaacatct |
38024429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 249
Target Start/End: Original strand, 38026030 - 38026111
Alignment:
| Q |
168 |
ttgcatataacctattattagtacagttctaatcacattcgtgacaattgtcagaataaattcattacctaaacatctgaaa |
249 |
Q |
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| T |
38026030 |
ttgcatataacctattattagtacagttctagtcacattcttgacaatggtcagaataaattcatgaccaaatcatctgaaa |
38026111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 3648896 - 3648929
Alignment:
| Q |
143 |
agtggccggggtttgaatccggaccttgcatata |
176 |
Q |
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| T |
3648896 |
agtggccgggatttgaatccggaccttgcatata |
3648929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 56205015 - 56204982
Alignment:
| Q |
143 |
agtggccggggtttgaatccggaccttgcatata |
176 |
Q |
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| T |
56205015 |
agtggccgaggtttgaatccggaccttgcatata |
56204982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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