View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_182 (Length: 248)

Name: NF1137_low_182
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_182
NF1137_low_182
[»] chr1 (11 HSPs)
chr1 (1-240)||(1856698-1856937)
chr1 (1-240)||(1816107-1816346)
chr1 (6-240)||(1868293-1868527)
chr1 (6-240)||(1842684-1842918)
chr1 (9-144)||(9170766-9170901)
chr1 (9-240)||(9200333-9200564)
chr1 (20-240)||(9218860-9219080)
chr1 (9-192)||(9118329-9118512)
chr1 (9-144)||(9161940-9162075)
chr1 (9-129)||(9156028-9156148)
chr1 (9-135)||(9229734-9229860)
[»] chr7 (3 HSPs)
chr7 (71-238)||(37567642-37567809)
chr7 (1-76)||(37572119-37572194)
chr7 (52-96)||(30105892-30105936)
[»] chr3 (1 HSPs)
chr3 (14-93)||(40597787-40597866)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1856937 - 1856698
Alignment:
Q  1 aaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1856937 aaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacatttctgtgattt 1856838  T
Q  101 atttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1856837 atttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagtt 1856738  T
Q  201 cccctttgtaaactgtaccaaaacctcctttacctatgat 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1856737 cccctttgtaaactgtaccaaaacctcctttacctatgat 1856698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1816107 - 1816346
Alignment:
Q  1 aaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1816107 aaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccccaagagtttgaccacattcctgtgattt 1816206  T
Q  101 atttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagtt 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  1816207 atttgagagacaacatccacctcgttaatgaattgttcaatttggctttcgtctattgttttggactttttgatagccacaattctattatcatcaagtt 1816306  T
Q  201 cccctttgtaaactgtaccaaaacctcctttacctatgat 240  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  1816307 cccctttgaaaactgtaccaaaacctcctctacctatgat 1816346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 1868527 - 1868293
Alignment:
Q  6 cagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttg 105  Q
    ||||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||    
T  1868527 cagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 1868428  T
Q  106 agagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccct 205  Q
    ||||| |||| ||||||||||||||||||| || ||||||||| | |||||| |||| || |||||||||||||| ||||| |||||||| ||    |||    
T  1868427 agagagaacaaccacctcattaatgaattgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaagtcct 1868328  T
Q  206 ttgtaaactgtaccaaaacctcctttacctatgat 240  Q
    ||| |||| ||||||||||| ||||| || |||||    
T  1868327 ttgaaaacggtaccaaaaccacctttgccaatgat 1868293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 1842918 - 1842684
Alignment:
Q  6 cagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttg 105  Q
    ||||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||    
T  1842918 cagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 1842819  T
Q  106 agagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccct 205  Q
    ||||| || |   ||||||||||||||||| |  ||||||||| | |||||| |||| || |||||||||||||| ||||| |||||||| ||    |||    
T  1842818 agagagaataattacctcattaatgaattgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaaatcct 1842719  T
Q  206 ttgtaaactgtaccaaaacctcctttacctatgat 240  Q
    |||||||| ||||||||||| ||||| || |||||    
T  1842718 ttgtaaacagtaccaaaaccacctttgccaatgat 1842684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 9170766 - 9170901
Alignment:
Q  9 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 108  Q
    |||| ||||| ||||||||||| || || |||||  ||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||| |     
T  9170766 aaagtgtaccgttgctaacaaattcgtacaccaatgaaggaacttctgtctctagacaacaccctaggagtttgacaacattcctatgatttatttgggt 9170865  T
Q  109 gacaacatccacctcattaatgaattgttcaatttg 144  Q
     | |||| | ||||||||||||||||| ||||||||    
T  9170866 cagaacaactacctcattaatgaattgctcaatttg 9170901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 9200333 - 9200564
Alignment:
Q  9 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 108  Q
    |||| ||||| ||||||||||| || || || ||  ||||||||||||| ||||||||||| |||| ||||||||| |||||||| ||||||||||| |     
T  9200333 aaagtgtaccgttgctaacaaattcgtacactaatgaaggaacttctgtctctagacaacagcctaggagtttgacaacattcctatgatttatttgggt 9200432  T
Q  109 gacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttg 208  Q
     | |||| | ||||||||||||||||| ||||||||  ||  ||| ||| |||| || ||||| | ||| |||||| | ||||||   |   | ||||||    
T  9200433 cagaacaactacctcattaatgaattgctcaatttgatttgcgtcaattattttggatttttttacagcgacaattttgttatcaggtaaaactcctttg 9200532  T
Q  209 taaactgtaccaaaacctcctttacctatgat 240  Q
    ||||||||||||||||||||| |||| |||||    
T  9200533 taaactgtaccaaaacctcctctaccgatgat 9200564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 9218860 - 9219080
Alignment:
Q  20 ttgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatcca 119  Q
    ||||||||||| ||||| |||||| ||||||||||||| || | |||||||||||| |||||||| || ||||| ||||||||||| || | |||| | |    
T  9218860 ttgctaacaaattcatacaccaacgaaggaacttctgtctccaaacaacaccctaaaagtttgacaacgttcctatgatttatttgggacagaacaacta 9218959  T
Q  120 cctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatc-atcaagttcccctttgtaaactgtac 218  Q
    |||||||||||||||| || || ||  ||  ||||||| |||| |||||||||| ||| |||||| | |||||   |||  |  |||||| |||||||||    
T  9218960 cctcattaatgaattgctcgatctgatttgcgtctattattttggactttttgacagcgacaattttgttatcgggcaaaat-tcctttgaaaactgtac 9219058  T
Q  219 caaaacctcctttacctatgat 240  Q
    ||||||||||| |||| |||||    
T  9219059 caaaacctcctctaccgatgat 9219080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 9118512 - 9118329
Alignment:
Q  9 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 108  Q
    |||| ||||| | |||||| || ||||| |||||  ||||||||||||| |||| |||||||||||| |||||||| |||||||| ||||||||||| ||    
T  9118512 aaagtgtaccgtggctaacgaattcatagaccaaggaaggaacttctgtctctaaacaacaccctaaaagtttgacaacattcctatgatttatttggga 9118413  T
Q  109 gacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatc 192  Q
     | || | | ||||||||||||||||| || |||||  ||  ||||||| || | |||||||||| ||| || ||||| |||||    
T  9118412 cagaataactacctcattaatgaattgctcgatttgatttgcgtctattattctggactttttgacagccacgattctgttatc 9118329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 9161940 - 9162075
Alignment:
Q  9 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 108  Q
    |||| |||||||||||||| || ||||| |||||| ||||||||||||| |||| |||||| || ||||||||||| ||||| || ||||||||||| ||    
T  9161940 aaagtgtaccattgctaacgaattcatacaccaacgaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctatgatttatttggga 9162039  T
Q  109 gacaacatccacctcattaatgaattgttcaatttg 144  Q
     | |||| | ||||| |||||||| || ||||||||    
T  9162040 cagaacaactacctcgttaatgaactgctcaatttg 9162075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 9156028 - 9156148
Alignment:
Q  9 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 108  Q
    |||| |||||||||||||| || |||||||||||  ||||||||||||| |||| |||||| || ||||||||||| ||||| |||||||||||||| ||    
T  9156028 aaagtgtaccattgctaacgaattcataaaccaaggaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctgtgatttatttggga 9156127  T
Q  109 gacaacatccacctcattaat 129  Q
     |  ||| | |||||||||||    
T  9156128 taggacaactacctcattaat 9156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 9229734 - 9229860
Alignment:
Q  9 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 108  Q
    |||| ||||||||||||| ||| |||||||| |  |||||||||| ||| || | |||||| || ||||||||||| ||||| || ||||||||||| ||    
T  9229734 aaagggtaccattgctaataaattcataaactagtaaaggaacttgtgtctccaaacaacatcccaagagtttgacaacatttctatgatttatttggga 9229833  T
Q  109 gacaacatccacctcattaatgaattg 135  Q
     | |||| |||||||||| ||||||||    
T  9229834 caaaacaaccacctcatttatgaattg 9229860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 37567809 - 37567642
Alignment:
Q  71 cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttt 170  Q
    ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| |||||||||  ||||||||||| || ||||    
T  37567809 cctaagagtttgaccacattcctatgatttatttgagagacaatgtccacctcattaatgaattgttcattttggctttcatctattgttttggattttt 37567710  T
Q  171 tgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctttacctatg 238  Q
    ||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||    
T  37567709 tgatagcaacagttctattatcatctagtttccctttgaaaactgtaccaaaacctcctctacctatg 37567642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37572194 - 37572119
Alignment:
Q  1 aaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaag 76  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  37572194 aaattcagaaagagtaccattgctaacaaactcataaaccaaccgaggaacttctgtttctagacaacaccctaag 37572119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 30105936 - 30105892
Alignment:
Q  52 ttctgtttctagacaacaccctaagagtttgaccacattcctgtg 96  Q
    ||||||||| |||||||| |||||||||||||| | |||||||||    
T  30105936 ttctgtttcaagacaacagcctaagagtttgacaatattcctgtg 30105892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 40597866 - 40597787
Alignment:
Q  14 gtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcct 93  Q
    |||||||||  || ||| |||||||| | ||| |||||||||||||||| |||||| ||||  ||||| |||||||||||    
T  40597866 gtaccattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaacctacaagttttaccacattcct 40597787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University