View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_185 (Length: 246)
Name: NF1137_low_185
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_185 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 26790911 - 26791051
Alignment:
| Q |
1 |
gagagatataggaatttccatcctttgagactagcacgtacagccaaatccatgtcttcgacggtggttctatctttccacccaccagcttcattcaacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
26790911 |
gagagatataggaatttccatcctttgagactagcacgtacagccaaatccatgtcttcgacggtggttctatctttccatccacccgcttcattcaacg |
26791010 |
T |
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| Q |
101 |
ccaaaattctccatacaccagcagtccctatgtcatttcat |
141 |
Q |
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| T |
26791011 |
ccgaaattctccatacaccagcagtccctatgtcatttcat |
26791051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 26831289 - 26831424
Alignment:
| Q |
1 |
gagagatataggaatttccatcctttgagactagcacgtacagccaaatccatgtcttcgacggtggttctatctttccacccaccagcttcattcaacg |
100 |
Q |
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||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26831289 |
gagaggtataagaatttccatcctttgagactggcacgtacagccaaatccatgtcttcgacggtggttctatctttccacccaccagcttcattcaacg |
26831388 |
T |
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| Q |
101 |
ccaaaattctccatacaccagcagtccctatgtcat |
136 |
Q |
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| T |
26831389 |
ccgaaattctccatacacccgcagtccctgtgtcat |
26831424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 26784585 - 26784725
Alignment:
| Q |
1 |
gagagatataggaatttccatcctttgagactagcacgtacagccaaatccatgtcttcgacggtggttctatctttccacccaccagcttcattcaacg |
100 |
Q |
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| T |
26784585 |
gagaggtataagaatttccatccttcgagacttgcacgtactgatagatccatatcttcaactgtggtcctatctttccacccaccagcttcattcaacg |
26784684 |
T |
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| Q |
101 |
ccaaaattctccatacaccagcagtccctatgtcatttcat |
141 |
Q |
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| T |
26784685 |
ccgaaattctccacacacccgcagtccctatgtcatttcat |
26784725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 26817624 - 26817748
Alignment:
| Q |
7 |
tataggaatttccatcctttgagactagcacgtacagccaaatccatgtcttcgacggtggttctatctttccacccaccagcttcattcaacgccaaaa |
106 |
Q |
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|||| |||||||||||||| ||||||||||||||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||||| || ||| |
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| T |
26817624 |
tataagaatttccatccttccagactagcacgtacagccaggtccatatcttcaactgtggtcctatctttccacccaccagcttcattcaatgctgaaa |
26817723 |
T |
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| Q |
107 |
ttctccatacaccagcagtccctat |
131 |
Q |
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||||||| ||||||||||||||||| |
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| T |
26817724 |
ttctccacacaccagcagtccctat |
26817748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 41919835 - 41919711
Alignment:
| Q |
7 |
tataggaatttccatcctttgagactagcacgtacagccaaatccatgtcttcgacggtggttctatctttccacccaccagcttcattcaacgccaaaa |
106 |
Q |
| |
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|||| ||| ||||| |||||||||||||| | |||||||| ||||| ||||| || ||||| ||||| ||||| |||||||| || |||| |||| ||| |
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| T |
41919835 |
tataagaacttccaccctttgagactagctctaacagccaagtccatatcttcaactgtggtcctatccttccatccaccagcctcgttcagcgccgaaa |
41919736 |
T |
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| Q |
107 |
ttctccatacaccagcagtccctat |
131 |
Q |
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||||||| || || ||||||||||| |
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| T |
41919735 |
ttctccacactcccgcagtccctat |
41919711 |
T |
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