View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_192 (Length: 226)

Name: NF1137_low_192
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_192
NF1137_low_192
[»] chr3 (1 HSPs)
chr3 (1-110)||(24226730-24226839)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-110)||(43849-43958)
[»] chr6 (8 HSPs)
chr6 (2-110)||(30149438-30149546)
chr6 (4-110)||(24897990-24898096)
chr6 (23-110)||(29953674-29953761)
chr6 (16-81)||(29949906-29949971)
chr6 (24-107)||(24942133-24942216)
chr6 (37-110)||(30135071-30135144)
chr6 (23-98)||(30154432-30154507)
chr6 (23-81)||(30053359-30053417)
[»] chr4 (1 HSPs)
chr4 (23-99)||(44262584-44262660)
[»] chr7 (1 HSPs)
chr7 (18-106)||(13093518-13093605)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 24226730 - 24226839
Alignment:
Q  1 aatatggttcctgacactgtagcatacaattccctaattgatggactttgcaaatcagggagaatatatgatgtttgggatttcataggtgagatgcatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24226730 aatatggttcctgacactgtagcatacaattccctaattgatggactttgcaaatcaaggagaatatatgatgtttgggatttcataggtgagatgcatg 24226829  T
Q  101 atagaggtca 110  Q
    ||||||||||    
T  24226830 atagaggtca 24226839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 43958 - 43849
Alignment:
Q  1 aatatggttcctgacactgtagcatacaattccctaattgatggactttgcaaatcagggagaatatatgatgtttgggatttcataggtgagatgcatg 100  Q
    |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||||||| | ||||| ||||||||| |||| |||||||||||    
T  43958 aatatggttcctaacactgtaacatacaattccttaattgatggactttgcaaattagggagaatgtctgatgcttgggattttatagatgagatgcatg 43859  T
Q  101 atagaggtca 110  Q
    ||||||||||    
T  43858 atagaggtca 43849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 30149438 - 30149546
Alignment:
Q  2 atatggttcctgacactgtagcatacaattccctaattgatggactttgcaaatcagggagaatatatgatgtttgggatttcataggtgagatgcatga 101  Q
    ||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||| |||| ||||||||||||    
T  30149438 atatgattcctaacactgtaacatacaattcccttattgatggactttgcaaattagggagagtatctgatgtttgggattttatagatgagatgcatga 30149537  T
Q  102 tagaggtca 110  Q
    |||||||||    
T  30149538 tagaggtca 30149546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 24897990 - 24898096
Alignment:
Q  4 atggttcctgacactgtagcatacaattccctaattgatggactttgcaaatcagggagaatatatgatgtttgggatttcataggtgagatgcatgata 103  Q
    |||| |||||| | ||||||||||| ||| || |||||||||||||||||||| |||| ||||| ||||||||||||| | |||| ||| ||||||||||    
T  24897990 atggctcctgatattgtagcatacagttcacttattgatggactttgcaaatcggggaaaatatctgatgtttgggatcttatagatgatatgcatgata 24898089  T
Q  104 gaggtca 110  Q
    |||||||    
T  24898090 gaggtca 24898096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 29953761 - 29953674
Alignment:
Q  23 catacaattccctaattgatggactttgcaaatcagggagaatatatgatgtttgggatttcataggtgagatgcatgatagaggtca 110  Q
    |||||||||| || |||||||||||||||||||||||||| || | ||||||||||||| | |||| |||||||||| ||||| ||||    
T  29953761 catacaattctcttattgatggactttgcaaatcagggagcatctctgatgtttgggatcttatagatgagatgcataatagatgtca 29953674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 29949971 - 29949906
Alignment:
Q  16 actgtagcatacaattccctaattgatggactttgcaaatcagggagaatatatgatgtttgggat 81  Q
    |||||| |||||||||| || ||||||||||||||||||||||||||||| | |||||||||||||    
T  29949971 actgtatcatacaattctcttattgatggactttgcaaatcagggagaatctctgatgtttgggat 29949906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 24942133 - 24942216
Alignment:
Q  24 atacaattccctaattgatggactttgcaaatcagggagaatatatgatgtttgggatttcataggtgagatgcatgatagagg 107  Q
    ||||| ||| || |||||||||||||||||||| || ||||| | ||||||||||||| | |||| |||||||||| |||||||    
T  24942133 atacagttcgcttattgatggactttgcaaatcgggaagaatctctgatgtttgggatcttatagatgagatgcataatagagg 24942216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 30135071 - 30135144
Alignment:
Q  37 attgatggactttgcaaatcagggagaatatatgatgtttgggatttcataggtgagatgcatgatagaggtca 110  Q
    |||||||||||||||| ||| |||||||  | ||||||||||||| | |||| |||||||||||| ||||||||    
T  30135071 attgatggactttgcatatcggggagaacctctgatgtttgggatcttatagatgagatgcatgaaagaggtca 30135144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 30154432 - 30154507
Alignment:
Q  23 catacaattccctaattgatggactttgcaaatcagggagaatatatgatgtttgggatttcataggtgagatgca 98  Q
    ||||||||||||| ||||| || ||||||||||| |||||||| | |||||||||| || | |||| |||||||||    
T  30154432 catacaattcccttattgacgggctttgcaaatcggggagaatctctgatgtttggtatcttatagatgagatgca 30154507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 30053359 - 30053417
Alignment:
Q  23 catacaattccctaattgatggactttgcaaatcagggagaatatatgatgtttgggat 81  Q
    |||||| ||| || |||||||||||||||||||| || ||||| | |||||||||||||    
T  30053359 catacagttcacttattgatggactttgcaaatcgggaagaatctctgatgtttgggat 30053417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 44262660 - 44262584
Alignment:
Q  23 catacaattccctaattgatggactttgcaaatcagggagaatatatgatgtttgggatttcataggtgagatgcat 99  Q
    |||||||||| || ||||||||||||||||||||||| ||||||| ||||||||||||| | |||| ||||||||||    
T  44262660 catacaattcacttattgatggactttgcaaatcaggaagaatatctgatgtttgggatcttatagatgagatgcat 44262584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 13093605 - 13093518
Alignment:
Q  18 tgtagcatacaattccctaattgatggactttgcaaatcagggagaatatatgatgtttgggatttcataggtgagatgcatgatagag 106  Q
    |||| |||||||||| || |||||||||||||||||||||| |||| | ||||||||||| ||| | || | ||||||||| |||||||    
T  13093605 tgtaacatacaattcacttattgatggactttgcaaatcagagagattctatgatgtttgtgatct-atggatgagatgcacgatagag 13093518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University