View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_193 (Length: 225)
Name: NF1137_low_193
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_193 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 12843564 - 12843354
Alignment:
| Q |
1 |
cgttcaagcttggaggtactgttaatattgagtttacattgtgaatttcaagcaagattcaagattatagtgttaatgtctactgttaagatcgattaat |
100 |
Q |
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| T |
12843564 |
cgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaat |
12843465 |
T |
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| Q |
101 |
cattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaatcatatagtgtttgatattagtcttgttgagt |
200 |
Q |
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| T |
12843464 |
cattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaatcatatagtgtttgatattagtcttgttgagt |
12843365 |
T |
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| Q |
201 |
attgcacttat |
211 |
Q |
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||||||||||| |
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| T |
12843364 |
attgcacttat |
12843354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 12861921 - 12862057
Alignment:
| Q |
5 |
caagcttggaggtactgttaatattgagtttacattgtgaatttcaagcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcatt |
104 |
Q |
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| T |
12861921 |
caagcttggaggtacccttaagatcgattttactttctaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcact |
12862020 |
T |
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| Q |
105 |
cttatgttcttaactcattttagagattatagtgtta |
141 |
Q |
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| T |
12862021 |
cttatgttcgtaactcattttagagattatagtgtta |
12862057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 13125837 - 13125763
Alignment:
| Q |
66 |
tatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtt |
140 |
Q |
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| T |
13125837 |
tatagtgttaatgtgtactgttaagatcgattaatcactcttatgttcctaactcattttagagattatagtgtt |
13125763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 13125587 - 13125540
Alignment:
| Q |
164 |
tagaatcatatagtgtttgatattagtcttgttgagtattgcacttat |
211 |
Q |
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| T |
13125587 |
tagaataatacagtgtttgattttagtgttgttgagtattgcacttat |
13125540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 13125630 - 13125589
Alignment:
| Q |
43 |
gaatttcaagcaagattcaagattatagtgttaatgtctact |
84 |
Q |
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| T |
13125630 |
gaatttctatcaagattcaagatcatagtgttaatgtctact |
13125589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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