View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_198 (Length: 219)
Name: NF1137_low_198
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_198 |
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Alignment Details
Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3765532 - 3765469
Alignment:
| Q |
1 |
actaacgcctctgaaaggtgattgaaacatggacatctgaggaaatcaggtccatccgagtgat |
64 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |
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| T |
3765532 |
actaacgcctctgaaaggtgattgaaacattgacatatgagggaatcaggtccatccgagtgat |
3765469 |
T |
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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 3762737 - 3762689
Alignment:
| Q |
81 |
attctccactatgaggaccaattacaatttgagaaccaatcacattctt |
129 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
3762737 |
attctccactatgaggaccaattacaatttgagcactaatcacattctt |
3762689 |
T |
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