View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_199 (Length: 216)

Name: NF1137_low_199
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_199
NF1137_low_199
[»] chr1 (5 HSPs)
chr1 (1-216)||(38084855-38085070)
chr1 (5-80)||(38141776-38141851)
chr1 (1-80)||(38153832-38153911)
chr1 (1-77)||(38089753-38089829)
chr1 (1-78)||(38109682-38109759)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 38084855 - 38085070
Alignment:
Q  1 aagccctatttccaacatatgattgctatcaatggatttgacgtagggagccatctcactaacccaattctacaataaattaatcaaaagcatgtgtcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38084855 aagccctatttccaacatatgattgctatcaatggatttgacgtagggagccatctcactaacccaattctacaataaattaatcaaaagcatgtgtcat 38084954  T
Q  101 aaactcataacaacttcatttcaatgcaatgaatggtggtgagagatgtaaatacttaagagtatcgaataaacaagaatgattaaacattatcaagtag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38084955 aaactcataacaacttcatttcaatgcaatgaatggtggtgagagatgtaaatacttaagattatcgaataaacaagaatgattaaacattatcaagtag 38085054  T
Q  201 tttaaagtctaaaaat 216  Q
    ||||||||||||||||    
T  38085055 tttaaagtctaaaaat 38085070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 38141776 - 38141851
Alignment:
Q  5 cctatttccaacatatgattgctatcaatggatttgacgtagggagccatctcactaacccaattctacaataaat 80  Q
    |||||||||| || |||||||||||||||||||||||| ||||  |||||||||  ||||||||||||||||||||    
T  38141776 cctatttccagcaaatgattgctatcaatggatttgacataggccgccatctcaacaacccaattctacaataaat 38141851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 38153832 - 38153911
Alignment:
Q  1 aagccctatttccaacatatgattgctatcaatggatttgacgtagggagccatctcactaacccaattctacaataaat 80  Q
    |||||||||||||| || |||||| ||||||||| ||||||| ||||  |||||||||| ||||||||||||||||||||    
T  38153832 aagccctatttccagcaaatgatttctatcaatgaatttgacataggccgccatctcaccaacccaattctacaataaat 38153911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 38089753 - 38089829
Alignment:
Q  1 aagccctatttccaacatatgattgctatcaatggatttgacgtagggagccatctcactaacccaattctacaata 77  Q
    |||||||||||| | || |||||||| ||| | ||||||||| |||||  |||||||||||| ||||||||||||||    
T  38089753 aagccctatttcgagcaaatgattgccatcgagggatttgacatagggcaccatctcactaatccaattctacaata 38089829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 38109682 - 38109759
Alignment:
Q  1 aagccctatttccaacatatgattgctatcaatggatttgacgtagggagccatctcactaacccaattctacaataa 78  Q
    |||||||||||| | || ||| ||| ||||||||||||| ||  | |  |||||||||| ||||||||||||||||||    
T  38109682 aagccctatttcgagcaaatgtttgttatcaatggattttacaaatgtcgccatctcacgaacccaattctacaataa 38109759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University