View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_2 (Length: 1034)
Name: NF1137_low_2
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_2 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 351 - 1034
Target Start/End: Original strand, 54478530 - 54479211
Alignment:
| Q |
351 |
ttcaatataaagcttcatcataatatttggaatttgtttccaattaactacaatctattgcaggtccacaagttttgcataagtacgtgtatctagtttt |
450 |
Q |
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| T |
54478530 |
ttcaatataaagcttcatcataatatttggaatttgtttccaattaactacaatctattgcaggtccacaagttttgcataagt----gtatctagtttt |
54478625 |
T |
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| Q |
451 |
gacaaaccttttagtcgtccaatgagcaaattagtcattattttattttctataatgtacgatactacatcaatattaaagaaaaactgttcttaaagca |
550 |
Q |
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| T |
54478626 |
gacaaaccttttagtcgtccaatgagcaaattagtcattattttattttctataatgtacgatactacatcaatattaaagaaaaactgttcttaaagca |
54478725 |
T |
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| Q |
551 |
tgaaaataatgcaaatatatattaattatannnnnnnnnnggaggcagtgataattcaatgaagaaagctttttgtaacatatt---ttaaattcattga |
647 |
Q |
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| T |
54478726 |
tgaaaataatgcaaatatatattaattata-tatttttttggaggcagtgataattcaatgaagaaagctttttgtaacatattttattaaattcattga |
54478824 |
T |
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| Q |
648 |
agaaatcttttttgtaaaatattttaaagtataaatatttgtatttgagcattgctttaaataatatgcatacaataagttgatcacttcaaagttaaag |
747 |
Q |
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| T |
54478825 |
agaaatcttttttgtaaaatattttaaagtataaatatttgtatttgagcattgctttaaataatatgcatacaataagttgatcacttcaaagttaaag |
54478924 |
T |
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| Q |
748 |
atcaaagtcttttttcattctctttcccattaaatttcctcacattgctcactcacactcacatcagaacannnnnnnnnnnnnnnnnnnnnnnnattaa |
847 |
Q |
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| T |
54478925 |
atcaaagtctgttttcattctctttcccattaaatttcctcacattgctcactcacactcgcatcagaacattcttttctttttcttttctctctattaa |
54479024 |
T |
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| Q |
848 |
ctcactccctcttattctttcaacacatcgatggatcccttcagagaaatcatgaatggctttgaggtaactcgagatggaaaaagtgtagtcatccctg |
947 |
Q |
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| T |
54479025 |
ctcactccctcttattctttcaacacatcgatggatcccttcagagatatcatgaatggctttgaagtaactcgagatggaaaaagtgtagtcatccctg |
54479124 |
T |
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| Q |
948 |
ccccttttgtatggccgctgattgcagagcaaccgttcacagctacaaatatctcttgcaaaatagaatagttaatatcaccggagc |
1034 |
Q |
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| T |
54479125 |
ccccttttgtatggccgctgattgcagagcaaccgttcacagctacaaatatctcttgcaaaatagaatagttaatatcaccggagc |
54479211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 212 - 360
Target Start/End: Original strand, 54478361 - 54478509
Alignment:
| Q |
212 |
aatgattgatcagtagaaataattagcagttgcagttatgaagactgttaattagaatttaaaagttctttaacttggctttttgtctaaaatcttgatc |
311 |
Q |
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| T |
54478361 |
aatgattgatcagtagaaataattagcagttgcagttatgaagactgttaattagaatttaaaagttctttaacttggctttttgtctaacatcttgatc |
54478460 |
T |
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| Q |
312 |
tgcatcctcgtagaaccaaacaagtgctatctgcttgtcttcaatataa |
360 |
Q |
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| T |
54478461 |
tgcatcctcgtagaaccaaacaagtgctatctgcttgtcttcaatataa |
54478509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 54478163 - 54478286
Alignment:
| Q |
6 |
acttccgctagctagaaacatttaatagtgagaagacatcaaaataatgttgcgagcaaagnnnnnnngagataatcaaatcctcaaaatcatgtaccaa |
105 |
Q |
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| T |
54478163 |
acttccgctagctagaaacatttaatagtgagaagacatcaaaataatgttgcgagcaaagaaaaaaagagataatcaaatcctcaaaatcatgtaccaa |
54478262 |
T |
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| Q |
106 |
aattagaaggaatcttgctttgtc |
129 |
Q |
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| T |
54478263 |
agttagaaggaatcttgctttgtc |
54478286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 44590237 - 44590293
Alignment:
| Q |
300 |
aaaatcttgatctgcatcctcgtagaaccaaacaagtgctatctgcttgtcttcaat |
356 |
Q |
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| T |
44590237 |
aaaatctggatctgcatcctcgtagcaccaaacaagtgctgtctccttatcttcaat |
44590293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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