View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_202 (Length: 209)
Name: NF1137_low_202
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_202 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 2e-69; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 33678282 - 33678150
Alignment:
| Q |
1 |
tacaattatatataatgaacattaaagtttataaagtccactactgccacttccactgctttctatatttcttttttatataagaaatcgacaaaccaat |
100 |
Q |
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| T |
33678282 |
tacaattatatataatgaacattaaagtttataaagtccactactgccacttccactgctttctatatttcttttttatataagaaatcgacaaaccaat |
33678183 |
T |
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| Q |
101 |
ccactatgtcacactaaataacggtcccctatg |
133 |
Q |
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| T |
33678182 |
ccactatgtcacactaaataacggtcccctatg |
33678150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 33669915 - 33669846
Alignment:
| Q |
37 |
tccactactgccacttccactgctttctatatttcttttttatataagaaatcgacaaaccaatccacta |
106 |
Q |
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| T |
33669915 |
tccactactgctacttccactgctttctatatttcttttttatataagaaatcgacaaaccaatcaacta |
33669846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 33698805 - 33698734
Alignment:
| Q |
37 |
tccactactgccacttccactgctttctatatttctttt--ttatataagaaatcgacaaaccaatccacta |
106 |
Q |
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| T |
33698805 |
tccactaatgccacttccactactttcaatatttctttttcttatgtaagaaatggacaaaccaatccacta |
33698734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 21248779 - 21248822
Alignment:
| Q |
59 |
ctttctatatttcttttttatataagaaatcgacaaaccaatcc |
102 |
Q |
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| T |
21248779 |
ctttctatatttcttttttatataaggaaaggacaaaccaatcc |
21248822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 33690272 - 33690225
Alignment:
| Q |
59 |
ctttctatatttcttttttatataagaaatcgacaaaccaatccacta |
106 |
Q |
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| T |
33690272 |
ctttctatatttctttttagtataagaaatggacaaactaatccacta |
33690225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 39
Target Start/End: Complemental strand, 33698933 - 33698903
Alignment:
| Q |
9 |
tatataatgaacattaaagtttataaagtcc |
39 |
Q |
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| T |
33698933 |
tatataatgaacattaaagtttataaagtcc |
33698903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 82357 - 82423
Alignment:
| Q |
37 |
tccactactgccacttccactgctttctatatttcttttttatataagaaatcgacaaaccaatcca |
103 |
Q |
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| T |
82357 |
tccactaatgccacttccactacttttaatatttcttttttatataagaaatggacaaaccaatcca |
82423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 39
Target Start/End: Original strand, 82230 - 82260
Alignment:
| Q |
9 |
tatataatgaacattaaagtttataaagtcc |
39 |
Q |
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| T |
82230 |
tatataatgaacattaaagtttataaagtcc |
82260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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