View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1137_low_25 (Length: 616)
Name: NF1137_low_25
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 70 - 586
Target Start/End: Original strand, 4741775 - 4742294
Alignment:
| Q |
70 |
aaggataggaaaatcaattaccaaggaatttagcatcgtgccatgattttaaaagcaaaaatggacatttcaattcacataatttcgtggcgcaaaataa |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||| ||||||||||||||||||||| |||||| | | || |
|
|
| T |
4741775 |
aaggataggaaaatcaattaccaaggaatttagcatcgtgcctcaattctaaa-gcataaatcaacatttcaattcacataattttgtggcgggagagaa |
4741873 |
T |
|
| Q |
170 |
ttgattcatgaaacaatttgggggagtgtcaaaacaagatttgaattctgaaacaaaccgtgacacgatattgctacattgtggcacaatgttacattga |
269 |
Q |
| |
|
|| ||||||||| ||||| |||||||||||| || |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4741874 |
gtgcatcatgaaacgatttgaaggagtgtcaaaataaaatttgaattctgaaactaatcgtgacacaatattgctacattgtggcacaatgttacattga |
4741973 |
T |
|
| Q |
270 |
tgcttcctgacatataagacaagtgaagtatcgcgccacgatctatgagcatcatgacactatctataaatgtatctttaggttgattcggttctgtttt |
369 |
Q |
| |
|
|| ||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||||| || |||||||||| |||||| ||| | |||||| ||||| |
|
|
| T |
4741974 |
tgtttcctaacataaaagacaagtgaagtatcacgccacgatctatgagtatcatgacacaatttataaatgtaactttagattggtacggttcggtttt |
4742073 |
T |
|
| Q |
370 |
aaaactgaaccagactaagtcaaatactttttcgatttggtttggttaaatttttggtttcgtcgattttgcttaaaccacatacacccttaactagagg |
469 |
Q |
| |
|
||| | ||| | || | ||| ||||| ||||| |||||||| ||| ||||||| |||||||| ||||||||||||||| ||||||| ||| |||| |
|
|
| T |
4742074 |
gaaattaaactaaacaaggtctaatacgttttccatttggttcagttgaattttttgtttcgtcaattttgcttaaaccatttacacccctaataggagg |
4742173 |
T |
|
| Q |
470 |
agtcat-----catgaatgtcaannnnnnnnaaagagaagctataattattatcatctaaaaaatgctaacattgtagccataagtgccgttagaatgtt |
564 |
Q |
| |
|
||| || |||||||||||| |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| | | |||||| |
|
|
| T |
4742174 |
agttatcataacatgaatgtcaa-tttttttaaagagaagcaaaaattattatcatataaaaaatgctaacattgtagccataagtgccataacaatgtt |
4742272 |
T |
|
| Q |
565 |
ttatttctcaaaattgtgttta |
586 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4742273 |
ttatttctcaaaattgtgttta |
4742294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 496 - 588
Target Start/End: Original strand, 4750274 - 4750366
Alignment:
| Q |
496 |
aaagagaagctataattattatcatctaaaaaatgctaacattgtagccataagtgccgttagaatgttttatttctcaaaattgtgtttaat |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
4750274 |
aaagagaagctataattattatcatctaaaaaatgctaacattgtagccataagtgccgtaacaatgttttatttctcaaaattgtgtttaat |
4750366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 429 - 484
Target Start/End: Original strand, 4747345 - 4747400
Alignment:
| Q |
429 |
tcgtcgattttgcttaaaccacatacacccttaactagaggagtcatcatgaatgt |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4747345 |
tcgtcgattttgcttaaaccacatacacccttaactggaggagtcatcatgaatgt |
4747400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 228 - 322
Target Start/End: Original strand, 4753231 - 4753325
Alignment:
| Q |
228 |
cgtgacacgatattgctacattgtggcacaatgttacattgatgcttcctgacatataagacaagtgaagtatcgcgccacgatctatgagcatc |
322 |
Q |
| |
|
||||||||||| || ||||||| |||||| || |||||||||||| || ||||| |||||||||||||| ||| ||| |||| ||||||||||| |
|
|
| T |
4753231 |
cgtgacacgatttttctacattatggcacgattttacattgatgcctcgtgacacgtaagacaagtgaaggatcacgctacgacctatgagcatc |
4753325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 4741086 - 4741121
Alignment:
| Q |
21 |
aagaatataagagaataatttattctttaatgcatg |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4741086 |
aagaatataagagaataatttattctttaatgcatg |
4741121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 4752933 - 4752969
Alignment:
| Q |
21 |
aagaatataagagaataatttattctttaatgcatgc |
57 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4752933 |
aagaatataacagaataatttattctttaatgcatgc |
4752969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 4407870 - 4407935
Alignment:
| Q |
376 |
gaaccagactaagtcaaatactttttcgatttggtttg-gttaaatttttggtttcgtcgattttg |
440 |
Q |
| |
|
||||||||| | ||| ||||||||||||||||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
4407870 |
gaaccagacaatgtcgaatactttttcgatttggtctgatttaaacttttggtttcgtcggttttg |
4407935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 440
Target Start/End: Original strand, 35954862 - 35954910
Alignment:
| Q |
393 |
atactttttcgatttggtttggtt-aaatttttggtttcgtcgattttg |
440 |
Q |
| |
|
|||||||||||||||| || |||| |||||||||||| ||||||||||| |
|
|
| T |
35954862 |
atactttttcgatttgattcggtttaaatttttggttacgtcgattttg |
35954910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University