View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_27 (Length: 604)
Name: NF1137_low_27
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 360 - 599
Target Start/End: Original strand, 37426827 - 37427055
Alignment:
| Q |
360 |
aatgattaaatttgtctcatagtatattggtggttgtaaatcaattcatcaacctggattaatccttaattaatcccaattcaattccactgtgtaacaa |
459 |
Q |
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| T |
37426827 |
aatgattaaatttgtctcatagtatattggtggttgtaaatcaattcatcaacctggatta-----------atcccaattcaattccactgtgtaacaa |
37426915 |
T |
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| Q |
460 |
gagattgagaagagagaggtgaacagctgatagtcgacggtgtggaggaggtcggtggcagaggagggtggcgaagggagttgttgattatgggtggtgg |
559 |
Q |
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| T |
37426916 |
gagattgagaagagagaggtgaacaactgatagtcgacggtgtggaggaggtcggtggcagaggagggcggcgaagggagttgttgattatgggtggtgg |
37427015 |
T |
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| Q |
560 |
atgaagagattttgttctgttctgttctaagttgcctatg |
599 |
Q |
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| T |
37427016 |
atgaagagattttgttcggttctgttctaagttgcttatg |
37427055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 29 - 288
Target Start/End: Original strand, 37426506 - 37426755
Alignment:
| Q |
29 |
atcgtgcgctcaacaaaatgacatgtatcaaacattttaannnnnnnnataataaataataataaaacaaatcagatagagtccatctaaaatcgcaacc |
128 |
Q |
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| T |
37426506 |
atcgtgcgctcaacaaaatgacatgtatcaaacattttaatttttt----------ttataataaaacaaatcagatagagtccatctaaaatcgcaacc |
37426595 |
T |
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| Q |
129 |
agtttcttcaccgtccgccgtcgtcgtcaaccctaacgtcgccggagttgtgactgacgccatggaccacgcactaacgtcttcgccgatcttcctccac |
228 |
Q |
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| T |
37426596 |
agtttcttcaccgtccgccgttgtcgtcaaccctaacgtcgccggagttgtgacttacgccatggaccacgcactaacgtcttcaccgatcttcctccac |
37426695 |
T |
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| Q |
229 |
tgccagatttgtctctacttacaaaacttttctaattaaagatttgtcctaagcatcata |
288 |
Q |
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| T |
37426696 |
tgccagatttgtctctacttataaaactcttctaattatagatttgtcctaagcatcata |
37426755 |
T |
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