View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_28 (Length: 589)
Name: NF1137_low_28
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_28 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 72 - 589
Target Start/End: Complemental strand, 3161753 - 3161238
Alignment:
| Q |
72 |
atctccaacaatattggatgatatagaaggagaagaaaaatccatgccaattgatgtttgtgagnnnnnnngaaagagttgatgtttgtgagttgtcacc |
171 |
Q |
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| T |
3161753 |
atctccatcaatattggatgatatagaaggagaagaaaaaaccatgctaattgatgtttgtgagtttttt-gaaagagttgatgtttgtgagttgtcacc |
3161655 |
T |
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| Q |
172 |
ctcttcttatccaatgttaccaaaacaaattgaaataatgacggaaactagagacggaaaaaataaaatttagcgtcaagtttgatctggcgtctctaat |
271 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3161654 |
ctcttcttatccgatgttaccaaaacaaattgaaataatgacggaaactagagacggaaaaaataaaatttagcgtcaagtttggtctggcgtctctaat |
3161555 |
T |
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| Q |
272 |
gcttggcgatggaattagaggctgatgttgcattttctttgtctctaaacttatgtcgctatttcaagttttacaggttgtatgtatcattcatccttat |
371 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3161554 |
gcttggcgatgggattagaggctgatgttgcattttcttcgtctctaaatttatgtcgctatttcaagttttacaggttgtatgtatcattcatccttct |
3161455 |
T |
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| Q |
372 |
tatgagcatgaattttgtttttgctacaagtcatttcgaggttggttagttcattagaaaactctcgtcccattttgttttctgattcaagtttcaactt |
471 |
Q |
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||| ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
3161454 |
tataagcat-ccttttttttttgctacaagccatttcgaggttggttagttcattagaaaactctcttcccattttgttatctgattcaagtttcaactt |
3161356 |
T |
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| Q |
472 |
caagcactcaggtattccattgaaagcataaagagaagctgagaatttcctctcatatttcattctcttcatagcatttcttagcattgaagactcatca |
571 |
Q |
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| T |
3161355 |
caagcactcaggtattccattgaaagcataaagagaagctgagaatttcctctcatatttcattctcttcatagcatttcttagcattgaagactcatca |
3161256 |
T |
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| Q |
572 |
ctatcatcattgatctct |
589 |
Q |
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| T |
3161255 |
ctatcatcattgatctct |
3161238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 446 - 572
Target Start/End: Complemental strand, 4039573 - 4039447
Alignment:
| Q |
446 |
ttgttttctgattcaagtttcaacttcaagcactcaggtattccattgaaagcataaagagaagctgagaatttcctctcatatttcattctcttcatag |
545 |
Q |
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|||||| | |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
4039573 |
ttgtttccagattcaagtttcaatttcaagcattcaggtattccattgaatgcataaagagaagctgaaaattttctctcatatttcattctcttcataa |
4039474 |
T |
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| Q |
546 |
catttcttagcattgaagactcatcac |
572 |
Q |
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| T |
4039473 |
cagctctaatcattgaaggctcatcac |
4039447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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