View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_29 (Length: 584)

Name: NF1137_low_29
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_29
NF1137_low_29
[»] chr3 (3 HSPs)
chr3 (11-556)||(3180294-3180859)
chr3 (15-44)||(21479086-21479115)
chr3 (11-43)||(24205110-24205142)
[»] chr5 (6 HSPs)
chr5 (172-375)||(20959650-20959862)
chr5 (48-174)||(20946556-20946682)
chr5 (487-556)||(20959983-20960052)
chr5 (443-494)||(20959923-20959974)
chr5 (375-424)||(20959879-20959928)
chr5 (11-44)||(31084287-31084320)
[»] scaffold0024 (1 HSPs)
scaffold0024 (16-77)||(18137-18198)
[»] chr7 (2 HSPs)
chr7 (89-127)||(25956525-25956563)
chr7 (12-40)||(1885532-1885560)
[»] chr6 (5 HSPs)
chr6 (89-135)||(26178564-26178610)
chr6 (14-71)||(4323904-4323961)
chr6 (91-127)||(785384-785420)
chr6 (13-77)||(17168860-17168924)
chr6 (91-127)||(34197199-34197235)
[»] chr4 (1 HSPs)
chr4 (88-122)||(39619047-39619081)
[»] chr1 (1 HSPs)
chr1 (14-44)||(22881678-22881708)
[»] scaffold0504 (1 HSPs)
scaffold0504 (11-43)||(8783-8815)
[»] scaffold0122 (1 HSPs)
scaffold0122 (91-127)||(10247-10283)
[»] scaffold0007 (1 HSPs)
scaffold0007 (11-43)||(225337-225369)
[»] chr2 (1 HSPs)
chr2 (12-44)||(24975384-24975416)


Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 11 - 556
Target Start/End: Complemental strand, 3180859 - 3180294
Alignment:
Q  11 cacagacacggacaccggacacgacactgacacgtctacaatgataaaactttaagaaaatgacataggttatgattccgggacacaccttcaatcagaa 110  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3180859 cacaaacacggacaccggacaggacactgacacgtctacaatgataaaattttaagaaaatgacataggttatgattccgggacacacgttcaatcagaa 3180760  T
Q  111 gtgtcagtgcaatagagatcatgacaaatgatgctcacaattatacaggaaaacatacctctgaggag-----------------caagatatggcagat 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||    
T  3180759 gtgtcagtgcaatagagatcatgacaaatgatgctcacaattatacaggaaaacatacctctgaggagacctatcccctgaggagcaagatatggcagat 3180660  T
Q  194 gaatgaaataactatcaagtgaagttgtgatagagatttcaccttttatttctccaataggctaaaaaaggtcaaattgaatcacaagcataatagattg 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3180659 gaatgaaataactatcaagtgaagttgtgatagagatttcaccttttatttctccaataggctaaaaaaggtcaagttgaatcacaagcataatagattg 3180560  T
Q  294 cagtaatccagtggacat---gtgattatatacaaactcattccaaaaagggtgttaataaagagaatgccatatgagttttgttcctgttctcagtttt 390  Q
    |||||| |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3180559 cagtaacccagtggacatatagtgattatatacaaactcattccaaaaagggtgttaataaagagaatgccatatgagttttgttcctgttctcagtttt 3180460  T
Q  391 agcaagattggacaggaaatggcatcaatttctccactgttagtcaaggaagtttcttagtatggaggagattctttggcaggtggctgtcttgtgcatt 490  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3180459 agcaagattggacaggaaatggcatcaatttctcccctgttagtcaaggaagtttcttagtatggaggagattctttggcaggtggctgtcttgtgcatt 3180360  T
Q  491 ggttgctttctctagcttagtgttccttgaaggcttgctggtagctttggtttccataactagttt 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3180359 ggttgctttctctagcttagtgttccttgaaggcttgctggtagctttggtttccataactagttt 3180294  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 21479086 - 21479115
Alignment:
Q  15 gacacggacaccggacacgacactgacacg 44  Q
    ||||||||||||||||||||||||||||||    
T  21479086 gacacggacaccggacacgacactgacacg 21479115  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 24205142 - 24205110
Alignment:
Q  11 cacagacacggacaccggacacgacactgacac 43  Q
    ||||||||||||||||||||||||||| |||||    
T  24205142 cacagacacggacaccggacacgacacggacac 24205110  T

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Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 172 - 375
Target Start/End: Original strand, 20959650 - 20959862
Alignment:
Q  172 tgaggagcaagatatggcagatgaatgaaataactatcaagtga-------agttgt-gatagagatttcaccttttatttctccaataggctaaaaaag 263  Q
    ||||||||||||||||||| ||||| |||||||||| |||||||       ||  || |||||||||||||||| |||| |||||||||||| | |||||    
T  20959650 tgaggagcaagatatggcaaatgaaagaaataactaccaagtgagtgatagagaagttgatagagatttcacctcttatatctccaataggcaacaaaag 20959749  T
Q  264 gtcaaattgaatcacaagcataatagattgcagtaatccagtggacat-gtgat--tatatacaaactcattccaaaaagggtgttaataaagagaatgc 360  Q
    | ||||||||| || ||||||||||||||||||||||| ||||||||| |||||  ||||||||||||| || |||||  |||||||| |||||||||||    
T  20959750 gacaaattgaaccaaaagcataatagattgcagtaatcaagtggacatagtgattatatatacaaactcgtttcaaaa--ggtgttaacaaagagaatgc 20959847  T
Q  361 catatgagttttgtt 375  Q
    |||||||||||||||    
T  20959848 catatgagttttgtt 20959862  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 20946556 - 20946682
Alignment:
Q  48 acaatgataaaactttaagaaaatgacataggttatgattccgggacacaccttcaatcagaagtgtcagtgcaatagagatcatgacaaatgatgctca 147  Q
    |||||||||||| ||| ||||||||||||| |||||||||  ||||||||||||  |||||||| ||| |||||||||| ||||| ||||||||||||||    
T  20946556 acaatgataaaattttgagaaaatgacataagttatgattttgggacacaccttagatcagaagcgtcggtgcaatagatatcataacaaatgatgctca 20946655  T
Q  148 caattatacaggaaaacatacctctga 174  Q
    |||||||| ||||||||||||||||||    
T  20946656 caattatagaggaaaacatacctctga 20946682  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 487 - 556
Target Start/End: Original strand, 20959983 - 20960052
Alignment:
Q  487 cattggttgctttctctagcttagtgttccttgaaggcttgctggtagctttggtttccataactagttt 556  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||    
T  20959983 cattggtttctttctctagcttagtgttccttaaaggcttgctcgtagcttaggttttcataactagttt 20960052  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 443 - 494
Target Start/End: Original strand, 20959923 - 20959974
Alignment:
Q  443 tttcttagtatggaggagattctttggcaggtggctgtcttgtgcattggtt 494  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  20959923 tttctcagtatggaggagattcttgggcaggtggctgtcttgtgcattggtt 20959974  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 375 - 424
Target Start/End: Original strand, 20959879 - 20959928
Alignment:
Q  375 tcctgttctcagttttagcaagattggacaggaaatggcatcaatttctc 424  Q
    ||||||||| | |||| ||||||||||||||||||| |||||||||||||    
T  20959879 tcctgttcttaatttttgcaagattggacaggaaatagcatcaatttctc 20959928  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 31084287 - 31084320
Alignment:
Q  11 cacagacacggacaccggacacgacactgacacg 44  Q
    |||||||| |||||||||||||||||||||||||    
T  31084287 cacagacatggacaccggacacgacactgacacg 31084320  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 18198 - 18137
Alignment:
Q  16 acacggacaccggacacgacactgacacgtctacaatgataaaactttaagaaaatgacata 77  Q
    ||||||||||| ||||||||||||||||||| |||  ||||||| ||| ||||||| |||||    
T  18198 acacggacaccagacacgacactgacacgtcgacaccgataaaattttgagaaaataacata 18137  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 25956525 - 25956563
Alignment:
Q  89 cgggacacaccttcaatcagaagtgtcagtgcaatagag 127  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  25956525 cgggacacgccttcaatcagaagtgtccgtgcaatagag 25956563  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 1885532 - 1885560
Alignment:
Q  12 acagacacggacaccggacacgacactga 40  Q
    |||||||||||||||||||||||||||||    
T  1885532 acagacacggacaccggacacgacactga 1885560  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 26178564 - 26178610
Alignment:
Q  89 cgggacacaccttcaatcagaagtgtcagtgcaatagagatcatgac 135  Q
    ||||||| ||||||||||||||||||| |||||  ||||||||||||    
T  26178564 cgggacataccttcaatcagaagtgtccgtgcatcagagatcatgac 26178610  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 4323961 - 4323904
Alignment:
Q  14 agacacggacaccggacacgacactgacacgtctacaatgataaaactttaagaaaat 71  Q
    |||||||||||||| |||||| ||||||||||  |||| ||||| | |||||||||||    
T  4323961 agacacggacaccgaacacgatactgacacgttgacaacgataataatttaagaaaat 4323904  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 785420 - 785384
Alignment:
Q  91 ggacacaccttcaatcagaagtgtcagtgcaatagag 127  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  785420 ggacacaccttcaatcagaagtgtccgtgcaacagag 785384  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 17168860 - 17168924
Alignment:
Q  13 cagacacggacaccggacacgacactgacacgtctacaatgataaaactttaagaaaatgacata 77  Q
    ||||||||||||||| |||||||||  ||||||| ||| |||||| | ||| | |||||||||||    
T  17168860 cagacacggacaccgaacacgacacaaacacgtcgacattgataataatttgaaaaaatgacata 17168924  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 34197199 - 34197235
Alignment:
Q  91 ggacacaccttcaatcagaagtgtcagtgcaatagag 127  Q
    ||||||||||||||  |||||||||||||||||||||    
T  34197199 ggacacaccttcaactagaagtgtcagtgcaatagag 34197235  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 122
Target Start/End: Complemental strand, 39619081 - 39619047
Alignment:
Q  88 ccgggacacaccttcaatcagaagtgtcagtgcaa 122  Q
    |||||||||||||||||||||||||||| ||||||    
T  39619081 ccgggacacaccttcaatcagaagtgtccgtgcaa 39619047  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 22881708 - 22881678
Alignment:
Q  14 agacacggacaccggacacgacactgacacg 44  Q
    |||||||||||||||||||||||||||||||    
T  22881708 agacacggacaccggacacgacactgacacg 22881678  T

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Target: scaffold0504 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 8815 - 8783
Alignment:
Q  11 cacagacacggacaccggacacgacactgacac 43  Q
    |||| ||||||||||||||||||||||||||||    
T  8815 cacatacacggacaccggacacgacactgacac 8783  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 10283 - 10247
Alignment:
Q  91 ggacacaccttcaatcagaagtgtcagtgcaatagag 127  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  10283 ggacacaccttcaatcagaagtgtctgtgcaagagag 10247  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 225369 - 225337
Alignment:
Q  11 cacagacacggacaccggacacgacactgacac 43  Q
    ||||||||||||||||||||||||||| |||||    
T  225369 cacagacacggacaccggacacgacacggacac 225337  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 24975416 - 24975384
Alignment:
Q  12 acagacacggacaccggacacgacactgacacg 44  Q
    |||| ||||||||||||||||||||||||||||    
T  24975416 acaggcacggacaccggacacgacactgacacg 24975384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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