View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_3 (Length: 883)
Name: NF1137_low_3
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 178 - 533
Target Start/End: Complemental strand, 12089705 - 12089353
Alignment:
| Q |
178 |
ccctaaaaggcatggactttgtgtttgtccctacaatttttccctcctgtgcgttataaaaacacacggtcatacactcttaagtgcatgagaataacca |
277 |
Q |
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| T |
12089705 |
ccctaaaagacatggactttgtgtttgtccctacaatttttccctcctgtgcgttataaaaacacacggtcgtgcactcttaagtgcatgagaataacca |
12089606 |
T |
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| Q |
278 |
acttgccttccccaaattagttcctaaagtaaaggatagggtcccgaagtgtggaaaatgtatttaggagttctagaagtaatttcatgaaacaatggtg |
377 |
Q |
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| T |
12089605 |
acttgtcttccccaaattagttcctaaagtaaaggatagggtcccgaa---tggaaaatgtatttaggagttctagaagtaatttcatgaaacaatggtg |
12089509 |
T |
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| Q |
378 |
agtctaaaaactaaagtagttaaagggaggaacatgagataatataaagagaggtatggagaggtaaattagaatagtaaatgatggcaaaggtaaatcc |
477 |
Q |
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| T |
12089508 |
agtctaaaaactaaactagttaaagggaggaacatgagataatataaagagaggtatggagaggtaaattagaatagtaaatgatggcaaaggtaaatcc |
12089409 |
T |
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| Q |
478 |
tctcggatgataaggagtctaaaaataattgttggataccttagtgaaggagtaaa |
533 |
Q |
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| T |
12089408 |
tttaggatgataaggagtctaaaaataattgttggataccttagtgaaggagtaaa |
12089353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 528 - 813
Target Start/End: Complemental strand, 12088986 - 12088706
Alignment:
| Q |
528 |
agtaaaagattcaaatgaacaaggagtagaatgtaacccattaagaagaattaacggtgctaagagaagagctaagatgaatataatttaaagtaggaaa |
627 |
Q |
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| T |
12088986 |
agtaaaagattcaaatgaacaaggagtagaatgtaacccattaagaagaattaacggtgctaagagaagagctaagatgaatataatttaaattaggaaa |
12088887 |
T |
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| Q |
628 |
tggtgagttaaggcacaaggtaaggttagaagtaattaaaatgacggggcaaaatgttaagtttcttcttaaagtatatagtaaaagtttgtagtggcat |
727 |
Q |
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| T |
12088886 |
tggtgagttaaggcactaggtaaggttagaagtaattaaaatgatggggcgaaatgttaagtt---tcttaatgtatatagtaaaagtttgtagtggcat |
12088790 |
T |
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| Q |
728 |
aattggtgtagttatatggacgtaaatggtggtggtggtgttaatatatgaggtgagactattgttaattatgatgatattgttgg |
813 |
Q |
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| T |
12088789 |
aactggtgtagttatatggacgtaaatggtggtggtggtgtta--atatgaggtgagactattgttaattttgatgatattgttgg |
12088706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 12090072 - 12089959
Alignment:
| Q |
56 |
aaaatgaggcaaaccctagctaaggaaaaaccaagttaaaagttgaaccgttggagaattcgaggta-gggggaaactttcatcttagggttttctaatt |
154 |
Q |
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| T |
12090072 |
aaaatgaggcaaaccctaactaaggaaaaaccaagtcaaaagttgaaccgttggagaatttgaggtacgggggaaactttcatcttagggtgttctaatt |
12089973 |
T |
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| Q |
155 |
cttgatttatgagt |
168 |
Q |
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| T |
12089972 |
gtggatttatgagt |
12089959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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