View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_30 (Length: 569)
Name: NF1137_low_30
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 93 - 532
Target Start/End: Original strand, 40114195 - 40114622
Alignment:
| Q |
93 |
agaccttacataggttttccattattcaattcgaaaaagaaataaggtaggtaggtttggaggaagatgagtcattggatataggtgacactccatctat |
192 |
Q |
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| T |
40114195 |
agaccttacataggttttccattattcaattcgaaaaagaaataaggtaggtaggtttggaggaagatgagtcattggatataggtgacactccatctat |
40114294 |
T |
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| Q |
193 |
tactattcaaagaggagtagtataagtacgagtagactaggtcaaatctttggtgctgatgttggattcattcaagttttcaattttcaattttcaatct |
292 |
Q |
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| T |
40114295 |
tactattcaaagaggagtagtataagtacgagtagactaggtcaaatctttggtgctgatgttggattcattcaag-------ttttcaattttcaatct |
40114387 |
T |
|
| Q |
293 |
taatcttttggttnnnnnnnntcttaatattccnnnnnnnnctttctcactcatgccttatatgttgggcatatttaattacttctccatttaccatgag |
392 |
Q |
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| T |
40114388 |
taatcttttggtt-aaaaaaatcttaatattcc-tttttttctttctcactcatgccttatatgtt---catatttaattacttctccatttaccatgag |
40114482 |
T |
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| Q |
393 |
ttgtttatttatatctatatgttaaaaagatttgaccaatatgaatgatcctttaactatttctttcgagcggtaatatgttaaaaagatttgaccaatt |
492 |
Q |
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| T |
40114483 |
ttgtttatttatatctatatgttaaaaagatttcaccaatatgaatgatcctttaactatttctttcgagcggtaatatgttaaaaagatttgaccaatt |
40114582 |
T |
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| Q |
493 |
atatgttactttatattctaaaggcactgttatgtacatc |
532 |
Q |
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| T |
40114583 |
ttatgttactttatactttaaaggcactgttacgtacatc |
40114622 |
T |
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