View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_31 (Length: 564)

Name: NF1137_low_31
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_31
NF1137_low_31
[»] chr8 (3 HSPs)
chr8 (8-501)||(29150933-29151426)
chr8 (193-258)||(26387133-26387198)
chr8 (241-281)||(43884856-43884896)
[»] chr2 (7 HSPs)
chr2 (124-425)||(2595112-2595410)
chr2 (136-312)||(2580375-2580551)
chr2 (137-312)||(2575995-2576169)
chr2 (182-423)||(2585807-2586044)
chr2 (344-424)||(2580619-2580696)
chr2 (458-502)||(2580709-2580753)
chr2 (458-502)||(2595422-2595466)
[»] chr6 (1 HSPs)
chr6 (126-425)||(30398208-30398500)
[»] chr7 (4 HSPs)
chr7 (182-313)||(46768559-46768689)
chr7 (182-311)||(36259410-36259539)
chr7 (182-312)||(36254531-36254661)
chr7 (182-311)||(36262222-36262342)
[»] chr3 (2 HSPs)
chr3 (126-216)||(21621218-21621308)
chr3 (126-216)||(21642888-21642978)
[»] chr4 (8 HSPs)
chr4 (182-312)||(35766191-35766321)
chr4 (182-284)||(19353603-19353705)
chr4 (182-311)||(19358295-19358424)
chr4 (193-282)||(19360627-19360716)
chr4 (182-251)||(19355222-19355291)
chr4 (209-279)||(11240745-11240815)
chr4 (232-283)||(11240665-11240716)
chr4 (182-245)||(19356700-19356763)


Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 8 - 501
Target Start/End: Original strand, 29150933 - 29151426
Alignment:
Q  8 caccacagaccacctaacctttcatccaccagcattgcatccccgccgctgccgccactgctgctttcattcacaagcatcggttcgcatctccgttgag 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29150933 caccaccgaccacctaacctttcatccaccagcattgcatccccgccgctgccgccactgctgctttcattcacaagcatcggttcgcatctccgttgag 29151032  T
Q  108 tatgagtgatcctccggttcaacccaatgcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctctt 207  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29151033 tatgagtgatcctccagctcaacccaatgcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctctt 29151132  T
Q  208 atgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29151133 atgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttga 29151232  T
Q  308 cactaatccgagataacataggaaagaaacttattcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttg 407  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29151233 cactaatccgagataacataggcaagaaacttattcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttg 29151332  T
Q  408 ttatgaaagtcaagatatttgttatccaagtaaagatatggaatttcgcaatgctattggattttgcaatggattgttttgtttaatttgttat 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29151333 ttatgaaagtcaagatatttgttatccaagtaaagatatggaatttcgcaatgctattggattttgcaatggattgttttgtttaatttgttat 29151426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 26387133 - 26387198
Alignment:
Q  193 gatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcct 258  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||| |||||||||||||||||||    
T  26387133 gatgtgaaatctcttatgcaaatgaggttcgtatgcaagtcttggaaatctatcatttctgatcct 26387198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 43884856 - 43884896
Alignment:
Q  241 tctatcatttctgatcctaaattcgtcaaacttcaccttaa 281  Q
    ||||| ||||||||||||||||| || ||||||||||||||    
T  43884856 tctattatttctgatcctaaatttgttaaacttcaccttaa 43884896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 7e-66; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 124 - 425
Target Start/End: Original strand, 2595112 - 2595410
Alignment:
Q  124 gttcaacccaatgcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtg 223  Q
    ||||||||||| |||||||  ||||||||||||||| || | |||||||  |||||| |||||||||| ||||||||||| |||||||||||||| || |    
T  2595112 gttcaacccaacgcagagtttccggtaagcctctcttacgatcttatcgtcgaaatcctttccttttctgatgtgaaatcacttatgcaaatgagatgcg 2595211  T
Q  224 tatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacactaatccgagataa 323  Q
    ||||||||||||||| |||||| |||||||||| | ||||| ||||||||||||||||||| || ||||||||||||||||||||||||  ||| | |||    
T  2595212 tatgcaaatcttggaaatctattatttctgatcatgaattcatcaaacttcaccttaagcgatcggcgcgaaacccttacttgacactatcccggggtaa 2595311  T
Q  324 cataggaaagaaacttattcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagat 423  Q
    || ||  |  |||  | ||||||||||||||| ||||||||   | ||||||||||||| ||||||||||||||| |||||||| |||  | ||||||||    
T  2595312 cacagctagcaaatattttcccttcccggtgcatcgtttaa---tccttgagaacccgttgatcctccttccggagaacctttgctatcgatgtcaagat 2595408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 136 - 312
Target Start/End: Original strand, 2580375 - 2580551
Alignment:
Q  136 gcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatctt 235  Q
    |||||||||||||||||||||||| |  ||||||| |  |||||| |||| |||||  |||||||||||||||||| |||||| || |||||||||||||    
T  2580375 gcagagtcaccggtaagcctctcttatgaccttatagtcgaaatcctttcattttctaatgtgaaatctcttatgcgaatgagatgcgtatgcaaatctt 2580474  T
Q  236 ggagatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacacta 312  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||  || ||||||||||||||||||||||||    
T  2580475 ggagatctatcatttctgatcctaaatttatcaaacttcaccttaagcaatcggcgcgaaacccttacttgacacta 2580551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 137 - 312
Target Start/End: Original strand, 2575995 - 2576169
Alignment:
Q  137 cagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttg 236  Q
    ||||||| ||| ||||||||||| |  |||||||| | ||| || ||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||    
T  2575995 cagagtctccgataagcctctcttatgaccttatcaccgaagtc-tttcctttttcgatgtgaaaactcttatgcgaatgaggtgtgtatgcaaatcttg 2576093  T
Q  237 gagatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacacta 312  Q
    || |||||| |||||||||||||||||| | ||||||||||||||||| || || |||||||||||||||||||||    
T  2576094 gaaatctattatttctgatcctaaattcattaaacttcaccttaagcgatcggcacgaaacccttacttgacacta 2576169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 182 - 423
Target Start/End: Original strand, 2585807 - 2586044
Alignment:
Q  182 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 281  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| || |||| |||| || ||||| ||||||||||||||||    
T  2585807 tttccttttccgatgtgaaatctcttatgccaatgagatgtgtatgcaaatcttggaaatcaattatttttgattctgaattcatcaaacttcaccttaa 2585906  T
Q  282 gcgttccgcgcgaaacccttacttgacactaatccgagataacataggaaagaaacttattcccttcccggtgcgtcgtttaattcttcttgagaacccg 381  Q
    ||| || || ||||| ||||||||||||||| |||||| ||||||    |  | | |||||| |||   ||||| || |||||   | ||||||||||||    
T  2585907 gcgatcagcacgaaa-ccttacttgacactattccgaggtaacatccctagtagagttattctctttttggtgcatcatttaa---tccttgagaacccg 2586002  T
Q  382 tggatcctccttccggataacctttgttatgaaagtcaagat 423  Q
    | |||||||||||||||||||||||||||| || ||||||||    
T  2586003 ttgatcctccttccggataacctttgttatcaatgtcaagat 2586044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 424
Target Start/End: Original strand, 2580619 - 2580696
Alignment:
Q  344 ccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagata 424  Q
    |||||||| ||||||||||||||||    |||||||||| |||||||||||| ||||||||| ||  |||| |||||||||    
T  2580619 ccttcccgatgcgtcgtttaattctc---gagaacccgtcgatcctccttccagataaccttcgtattgaatgtcaagata 2580696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 502
Target Start/End: Original strand, 2580709 - 2580753
Alignment:
Q  458 atgctattggattttgcaatggattgttttgtttaatttgttatt 502  Q
    |||||||||||| ||||||| ||||||||||||| ||| ||||||    
T  2580709 atgctattggatcttgcaatagattgttttgtttgattggttatt 2580753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 502
Target Start/End: Original strand, 2595422 - 2595466
Alignment:
Q  458 atgctattggattttgcaatggattgttttgtttaatttgttatt 502  Q
    |||||||||||| |||||||||| |||||||||| ||| ||||||    
T  2595422 atgctattggatcttgcaatggaatgttttgtttgattggttatt 2595466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 126 - 425
Target Start/End: Original strand, 30398208 - 30398500
Alignment:
Q  126 tcaacccaatgcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatgaggtgtgta 225  Q
    ||||||||| |||||||  |||||||||||     || |||||||||| |||||| ||||||||||| |||||||||||||||||| |||| | || |||    
T  30398208 tcaacccaacgcagagtttccggtaagcctt----acgaccttatcgccgaaatcctttccttttccaatgtgaaatctcttatgctaatgcgatgagta 30398303  T
Q  226 tgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaagcgttccgcgcgaaacccttacttgacactaatccgagataaca 325  Q
    ||| ||||||||| |||||| |||||||| ||| ||||||||||||||||||||||||| || ||| ||||||| ||| |||||||| || |||  ||||    
T  30398304 tgccaatcttggaaatctattatttctgaacctgaattcgtcaaacttcaccttaagcgatcggcgtgaaacccgtacatgacactattcggaggcaaca 30398403  T
Q  326 taggaaagaaacttattcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagatat 425  Q
    ||    | ||| |||||||||||||||||| || |||||   |||| |||||||||| ||||||||||||| |||||| | |||||  | ||||||||||    
T  30398404 tatccgacaaaattattcccttcccggtgcatcttttaa---ttctcgagaacccgttgatcctccttccgtataaccctagttatcgatgtcaagatat 30398500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 182 - 313
Target Start/End: Original strand, 46768559 - 46768689
Alignment:
Q  182 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 281  Q
    ||||||| |||||||||||||||||||||| |||||| ||||| ||||||||||||| |||||| ||||| ||||||| |||  |||||||||| ||||     
T  46768559 tttccttctccgatgtgaaatctcttatgcgaatgagatgtgt-tgcaaatcttggaaatctattatttccgatcctatatttatcaaacttcatcttac 46768657  T
Q  282 gcgttccgcgcgaaacccttacttgacactaa 313  Q
    | ||||||| ||||||||||||||||||||||    
T  46768658 gtgttccgcacgaaacccttacttgacactaa 46768689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 182 - 311
Target Start/End: Original strand, 36259410 - 36259539
Alignment:
Q  182 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 281  Q
    |||| |||||||||||||| |  |||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||| || ||||| ||||||||    
T  36259410 tttcattttccgatgtgaagttccttatgcaaatgagatgtgtatgcaagtcttggaaatctataatttctgatcctaaatttgtgaaactccaccttaa 36259509  T
Q  282 gcgttccgcgcgaaacccttacttgacact 311  Q
    ||| || ||  |||||||| ||||||||||    
T  36259510 gcgatctgcaagaaaccctcacttgacact 36259539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 312
Target Start/End: Original strand, 36254531 - 36254661
Alignment:
Q  182 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 281  Q
    |||| ||||||||||||||||  |||||||||||||||||  | ||||| ||||||| |||| | ||||| |||||||| || || ||||| ||| ||||    
T  36254531 tttcattttccgatgtgaaattccttatgcaaatgaggtgcctttgcaagtcttggaaatctctaatttccgatcctaactttgtgaaactccacattaa 36254630  T
Q  282 gcgttccgcgcgaaacccttacttgacacta 312  Q
    ||| || ||  |||||||| |||||||||||    
T  36254631 gcgatcagcaagaaaccctcacttgacacta 36254661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 182 - 311
Target Start/End: Original strand, 36262222 - 36262342
Alignment:
Q  182 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 281  Q
    |||| ||||| ||||| ||||  ||||||||||||||||||||||||||         |||||| ||||| |||||||  || || ||||| ||||||||    
T  36262222 tttcattttctgatgttaaattccttatgcaaatgaggtgtgtatgcaa---------atctataatttccgatcctatctttgtgaaactccaccttaa 36262312  T
Q  282 gcgttccgcgcgaaacccttacttgacact 311  Q
    ||| |||||  |||||||| ||||||||||    
T  36262313 gcgatccgcaagaaaccctcacttgacact 36262342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 21621308 - 21621218
Alignment:
Q  126 tcaacccaatgcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatg 216  Q
    ||||||||| |||||||  ||||||||||||||| || |||||||||| |||||| ||||||||||| |||||||||||||||||| ||||    
T  21621308 tcaacccaacgcagagtttccggtaagcctctcttacgaccttatcgccgaaatcctttccttttccaatgtgaaatctcttatgcgaatg 21621218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 21642978 - 21642888
Alignment:
Q  126 tcaacccaatgcagagtcaccggtaagcctctctgacaaccttatcgctgaaatcatttccttttccgatgtgaaatctcttatgcaaatg 216  Q
    ||||||||| |||||||  ||||||||||||||| || |||||||||| |||||| ||||||||||| |||||||||||||||||| ||||    
T  21642978 tcaacccaacgcagagtttccggtaagcctctcttacgaccttatcgccgaaatcctttccttttccaatgtgaaatctcttatgcgaatg 21642888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 182 - 312
Target Start/End: Original strand, 35766191 - 35766321
Alignment:
Q  182 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 281  Q
    |||||||||||||||||||||||||||| |||||||  ||  | ||||| |||||||  ||||| || || ||||||||||| | |||||||||||||||    
T  35766191 tttccttttccgatgtgaaatctcttatccaaatgaaatgcctttgcaagtcttggaattctataatctccgatcctaaatttgccaaacttcaccttaa 35766290  T
Q  282 gcgttccgcgcgaaacccttacttgacacta 312  Q
    ||| || || | ||||||| |||||| ||||    
T  35766291 gcgatcagcacaaaaccctcacttgatacta 35766321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 284
Target Start/End: Original strand, 19353603 - 19353705
Alignment:
Q  182 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 281  Q
    |||| ||||||||||| ||||  |||||||||||||||||||||||||| ||||||| ||||||  ||||  ||||||| ||  | ||||| ||||||||    
T  19353603 tttcattttccgatgttaaattccttatgcaaatgaggtgtgtatgcaagtcttggaaatctatattttccaatcctaactttttgaaactccaccttaa 19353702  T
Q  282 gcg 284  Q
    |||    
T  19353703 gcg 19353705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 311
Target Start/End: Original strand, 19358295 - 19358424
Alignment:
Q  182 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 281  Q
    |||| ||||||||||| ||||  ||||||||||||||||||||||| |  ||||||| |||||| |||||  ||||||| || || |||||  |||||||    
T  19358295 tttcgttttccgatgttaaattccttatgcaaatgaggtgtgtatggatctcttggaaatctataatttccaatcctaactttgtgaaactctaccttaa 19358394  T
Q  282 gcgttccgcgcgaaacccttacttgacact 311  Q
    ||| |  ||  |||||||| ||||||||||    
T  19358395 gcgatttgcatgaaaccctcacttgacact 19358424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 19360627 - 19360716
Alignment:
Q  193 gatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaag 282  Q
    ||||||||||  || ||| ||||||||||| ||| ||| ||||||| |||| | ||||||||||||||||| || |||||||||||||||    
T  19360627 gatgtgaaattcctcatgtaaatgaggtgtttatccaagtcttggaaatctctaatttctgatcctaaatttgtgaaacttcaccttaag 19360716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 19355222 - 19355291
Alignment:
Q  182 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttc 251  Q
    |||| |||| |||||| ||||  |||||||||||||||||||||||||| ||||||| |||||| |||||    
T  19355222 tttcatttttcgatgttaaattccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatttc 19355291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 11240745 - 11240815
Alignment:
Q  209 tgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcacctt 279  Q
    |||| ||||||||  ||||||| ||||||| |||||| |||||| ||||||||||  ||||||||||||||    
T  11240745 tgcacatgaggtggatatgcaagtcttggaaatctataatttctaatcctaaatttttcaaacttcacctt 11240815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 11240716 - 11240665
Alignment:
Q  232 tcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaagc 283  Q
    ||||||| ||||||  |||| |||||||||||||| ||||||||||||||||    
T  11240716 tcttggaaatctatagtttcagatcctaaattcgtgaaacttcaccttaagc 11240665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 19356700 - 19356763
Alignment:
Q  182 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctat 245  Q
    |||| ||||||| ||| ||||  |||||||||||||||||||||||||| ||||| | ||||||    
T  19356700 tttcattttccggtgttaaattccttatgcaaatgaggtgtgtatgcaattcttgaaaatctat 19356763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University