View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_36 (Length: 551)

Name: NF1137_low_36
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_36
NF1137_low_36
[»] chr8 (6 HSPs)
chr8 (36-481)||(40957085-40957530)
chr8 (76-196)||(40957125-40957245)
chr8 (75-203)||(10172405-10172532)
chr8 (66-182)||(10172420-10172535)
chr8 (56-136)||(35524241-35524321)
chr8 (325-385)||(40944410-40944470)
[»] chr4 (6 HSPs)
chr4 (115-201)||(31053016-31053101)
chr4 (76-160)||(30546442-30546525)
chr4 (48-88)||(24884686-24884726)
chr4 (93-138)||(2405809-2405854)
chr4 (76-117)||(2742192-2742233)
chr4 (76-128)||(31053044-31053096)
[»] chr2 (6 HSPs)
chr2 (49-203)||(1465716-1465869)
chr2 (68-136)||(18587171-18587239)
chr2 (76-196)||(1465743-1465862)
chr2 (143-194)||(18587181-18587232)
chr2 (69-139)||(9277523-9277593)
chr2 (79-128)||(34820089-34820138)
[»] chr5 (3 HSPs)
chr5 (76-139)||(19117268-19117331)
chr5 (114-201)||(14717311-14717397)
chr5 (56-88)||(17358506-17358538)
[»] chr1 (3 HSPs)
chr1 (77-131)||(47210103-47210157)
chr1 (48-130)||(28016557-28016639)
chr1 (58-137)||(40614051-40614130)
[»] chr3 (4 HSPs)
chr3 (52-128)||(30695580-30695656)
chr3 (76-203)||(35970431-35970557)
chr3 (76-183)||(35970438-35970544)
chr3 (47-139)||(19710879-19710971)
[»] chr7 (7 HSPs)
chr7 (76-203)||(23540178-23540304)
chr7 (76-169)||(33815748-33815841)
chr7 (76-128)||(8770285-8770337)
chr7 (103-203)||(30017438-30017537)
chr7 (85-201)||(44411127-44411244)
chr7 (76-185)||(18358793-18358901)
chr7 (76-185)||(45429262-45429370)
[»] chr6 (1 HSPs)
chr6 (52-85)||(7594167-7594200)


Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 36 - 481
Target Start/End: Original strand, 40957085 - 40957530
Alignment:
Q  36 atgattaatacattaattactatacacttacggtgtaaagttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattca 135  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40957085 atgatcaatacattaattactatacacttacggtgtaaagttattttacacatacatctaataataagttgtcacgttaattaatgaatatgacaattca 40957184  T
Q  136 tgtgattgtcatattcataaattgacgtgacaactcattattggatgcatatataaaataattatacagtgtatactaatccaattctttcacaatttta 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  40957185 tgtgattgtcatattcataaattgacgtgacaactcattattggatgcatatataaaataattgtacggtgtatactaatccaattctttcacaatttta 40957284  T
Q  236 tgtgtttaagagattagttttgatatatgtaagtgtgaagagnnnnnnnacactgtcattcaattataaattgtcacatcattaaaaacgttaccttcaa 335  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40957285 tgtgtttaagagattagttttgatatatgtaagtgtgaagagtttttttacactgtcattcaattataaattgtcacatcattaaaaacgttaccttcaa 40957384  T
Q  336 tttgaactaccttaaaagtcacccaaaagattatttgtgattagtgtaaaagatctttacactgttattgacaatgcatgctaatttcattannnnnnna 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  40957385 tttgaactaccttaaaagtcacccaaaagattatttgtgattagtgtaaaagatctttacactgttattgacaatgcatgctaatttcattattttttta 40957484  T
Q  436 ccttttagattagcatccctgttttgttttgttctgttctgttcat 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40957485 ccttttagattagcatccctgttttgttttgttctgttctgttcat 40957530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 40957245 - 40957125
Alignment:
Q  76 ttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaat-tcatgtgattgtcatattcataaattgacgtgacaactcatt 174  Q
    |||||||| | || ||||||||||| ||||||||||| |||| ||||||||||||||  ||||  |||||||||||||| |||| ||||||||||| |||    
T  40957245 ttattttatatatgcatccaataatgagttgtcacgtcaatttatgaatatgacaatcacatg-aattgtcatattcattaattaacgtgacaacttatt 40957147  T
Q  175 attggatgcatatataaaataa 196  Q
    ||| |||| || | ||||||||    
T  40957146 attagatgtatgtgtaaaataa 40957125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 10172405 - 10172532
Alignment:
Q  75 gttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcatgtga-ttgtcatattcataaattgacgtgacaactcat 173  Q
    |||| ||||||||||||||| |||||  ||||| |||| ||||||||||| ||| ||  ||| ||| ||||||||||||  ||||||||||||||| |||    
T  10172405 gttactttacacatacatccgataatgtgttgttacgtcaattaatgaatgtgaaaa--catatgagttgtcatattcactaattgacgtgacaacgcat 10172502  T
Q  174 tattggatgcatatataaaataattataca 203  Q
     ||| ||||||| | |||||||||| ||||    
T  10172503 catttgatgcatgtgtaaaataattgtaca 10172532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 66 - 182
Target Start/End: Complemental strand, 10172535 - 10172420
Alignment:
Q  66 cggtgtaaagttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcatgtgattgtcatattcataaattgacgtga 165  Q
    ||||||| | ||||||||||||| |||| ||| ||  |||||||||| ||||| |||||||||||| |||| || || ||| |||||| ||||||||| |    
T  10172535 cggtgtacaattattttacacatgcatcaaatgatgcgttgtcacgtcaattagtgaatatgacaactcatatg-ttttcacattcattaattgacgtaa 10172437  T
Q  166 caactcattattggatg 182  Q
    |||| |||||| |||||    
T  10172436 caacacattatcggatg 10172420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 35524241 - 35524321
Alignment:
Q  56 tatacacttacggtgtaaagttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcat 136  Q
    |||||||| || ||||||||||| ||||||||| |||||||||||  |||||  |||||||||||||||| ||||| ||||    
T  35524241 tatacactgacagtgtaaagttactttacacatgcatccaataatgtgttgttgcgttaattaatgaatacgacaactcat 35524321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 40944410 - 40944470
Alignment:
Q  325 gttaccttcaatttgaactaccttaaaagtcacccaaaagattatttgtgattagtgtaaa 385  Q
    |||||||| ||||  ||||||||| ||| ||||  ||| ||||||||||||||||||||||    
T  40944410 gttacctttaattctaactaccttgaaaatcacataaaggattatttgtgattagtgtaaa 40944470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 31053016 - 31053101
Alignment:
Q  115 attaatgaatatgacaattcatgtgattgtcatattcataaattgacgtgacaactcattattggatgcatatataaaataattata 201  Q
    ||||||||||||||||| || |||| || |||||||||| |||||||| |||||| ||| ||||||||||| | |||||||||||||    
T  31053016 attaatgaatatgacaactcgtgtgttt-tcatattcattaattgacgcgacaacacatcattggatgcatgtgtaaaataattata 31053101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 30546525 - 30546442
Alignment:
Q  76 ttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcatgtgattgtcatattcataaattga 160  Q
    ||||||||||||| |||||||  ||| |||||||||||||||| |||||| ||||| |||||| ||| |||||||||| ||||||    
T  30546525 ttattttacacatgcatccaacgatatgttgtcacgttaattagtgaataagacaactcatgt-attttcatattcattaattga 30546442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 24884686 - 24884726
Alignment:
Q  48 ttaattactatacacttacggtgtaaagttattttacacat 88  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  24884686 ttaattactatacactgatggtgtaaagttattttacacat 24884726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 2405854 - 2405809
Alignment:
Q  93 ccaataataagttgtcacgttaattaatgaatatgacaattcatgt 138  Q
    ||||| || |||||||| ||||||||||||||||||||| ||||||    
T  2405854 ccaatgattagttgtcaggttaattaatgaatatgacaactcatgt 2405809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 2742192 - 2742233
Alignment:
Q  76 ttattttacacatacatccaataataagttgtcacgttaatt 117  Q
    |||||||| ||||||||||||||||| |||||||||| ||||    
T  2742192 ttattttaaacatacatccaataatatgttgtcacgtcaatt 2742233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 31053096 - 31053044
Alignment:
Q  76 ttattttacacatacatccaataataagttgtcacgttaattaatgaatatga 128  Q
    ||||||||||||| |||||||| ||  |||||| ||| |||||||||||||||    
T  31053096 ttattttacacatgcatccaatgatgtgttgtcgcgtcaattaatgaatatga 31053044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 1465716 - 1465869
Alignment:
Q  49 taattactatacacttacggtgtaaagttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcatgtgattgtcata 148  Q
    |||||| ||||| || |||||||| ||||||||||||||| |||||||| ||  |||||||||| ||||||| ||||||| ||  || | | ||||||||    
T  1465716 taattagtatactctcacggtgtacagttattttacacatgcatccaatgatgtgttgtcacgtcaattaataaatatgaaaacacacgag-ttgtcata 1465814  T
Q  149 ttcataaattgacgtgacaactcattattggatgcatatataaaataattataca 203  Q
    || || || ||| |||  ||| ||| ||||||||||| | |||||||||| ||||    
T  1465815 ttgatcaaatgatgtggaaacacatcattggatgcatgtgtaaaataattgtaca 1465869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 18587171 - 18587239
Alignment:
Q  68 gtgtaaagttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcat 136  Q
    ||||||||| ||||||||||| |||||||||||  ||| |||||| |||||||||||||||| ||||||    
T  18587171 gtgtaaagtgattttacacatgcatccaataatgtgttatcacgtcaattaatgaatatgactattcat 18587239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 1465862 - 1465743
Alignment:
Q  76 ttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcatgtgattgtcatattcataaattgacgtgacaactcatta 175  Q
    ||||||||||||| |||||||| ||  |||  ||| | | || || |||||||||| || |||| || ||||||| || ||||||||||||||| ||| |    
T  1465862 ttattttacacatgcatccaatgatgtgtttccacatcatttgatcaatatgacaactcgtgtgttt-tcatatttattaattgacgtgacaacacatca 1465764  T
Q  176 ttggatgcatatataaaataa 196  Q
    |||||||||| | ||||||||    
T  1465763 ttggatgcatgtgtaaaataa 1465743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 18587232 - 18587181
Alignment:
Q  143 gtcatattcataaattgacgtgacaactcattattggatgcatatataaaat 194  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||| | ||||||    
T  18587232 gtcatattcattaattgacgtgataacacattattggatgcatgtgtaaaat 18587181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 9277523 - 9277593
Alignment:
Q  69 tgtaaagttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcatgtg 139  Q
    |||||| |||||||||| || |||| ||||||  | |||||||| ||||||||||| ||| ||||||||||    
T  9277523 tgtaaaattattttacatattcatctaataatgtggtgtcacgtcaattaatgaatgtgagaattcatgtg 9277593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 34820089 - 34820138
Alignment:
Q  79 ttttacacatacatccaataataagttgtcacgttaattaatgaatatga 128  Q
    ||||||||||||||| ||| | | |||||||||| |||||||||||||||    
T  34820089 ttttacacatacatctaatcaaatgttgtcacgtcaattaatgaatatga 34820138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 19117331 - 19117268
Alignment:
Q  76 ttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcatgtg 139  Q
    ||||||||||||| |||||||||||  |||||||| |||||||||||| |||| ||||||||||    
T  19117331 ttattttacacatgcatccaataatgtgttgtcacattaattaatgaacatgaaaattcatgtg 19117268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 14717311 - 14717397
Alignment:
Q  114 aattaatgaatatgacaattcatgtgattgtcatattcataaattgacgtgacaactcattattggatgcatatataaaataattata 201  Q
    ||||||| |||||| ||| ||| ||| || |||||||||| |||||| |||||||| ||| ||| ||||||| | |||||||||||||    
T  14717311 aattaataaatatggcaactcacgtgttt-tcatattcattaattgatgtgacaacacatcattagatgcatgtgtaaaataattata 14717397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 17358506 - 17358538
Alignment:
Q  56 tatacacttacggtgtaaagttattttacacat 88  Q
    |||||||| ||||||||||||||||||||||||    
T  17358506 tatacactgacggtgtaaagttattttacacat 17358538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 47210157 - 47210103
Alignment:
Q  77 tattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaa 131  Q
    ||||||||||||||||| ||||||| |||||||| | ||||||||||||||||||    
T  47210157 tattttacacatacatctaataatatgttgtcacataaattaatgaatatgacaa 47210103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 28016557 - 28016639
Alignment:
Q  48 ttaattactatacacttacggtgtaaagttattttacacatacatccaataataagttgtcacgttaattaatgaatatgaca 130  Q
    ||||| ||||||||||||| ||||| | ||||||||||||||||| |||| ||  |||||||  | |||||| ||||||||||    
T  28016557 ttaataactatacacttaccgtgtacaattattttacacatacattcaatgatgtgttgtcatttcaattaacgaatatgaca 28016639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 40614051 - 40614130
Alignment:
Q  58 tacacttacggtgtaaagttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcatg 137  Q
    |||||| || |||||||  ||||||| ||||||||| | | ||| |||||||||||||||||| ||||| | ||||||||    
T  40614051 tacactaaccgtgtaaatgtattttaaacatacatcaagtgatatgttgtcacgttaattaataaatatcaaaattcatg 40614130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 30695656 - 30695580
Alignment:
Q  52 ttactatacacttacggtgtaaagttattttacacatacatccaataataagttgtcacgttaattaatgaatatga 128  Q
    |||||||||||| |||||||||||||| |||||| ||| ||||||||||  | |||||| | ||||||| |||||||    
T  30695656 ttactatacactaacggtgtaaagttactttacatatatatccaataatgtgatgtcacctcaattaattaatatga 30695580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 203
Target Start/End: Complemental strand, 35970557 - 35970431
Alignment:
Q  76 ttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcatgtgattgtcatattcataaattgacgtgacaactcatta 175  Q
    ||||||| ||||  |||||||| ||| |||||||||| ||||||| ||||||| ||  |||  |   ||||||||||| ||||||||||||||| ||| |    
T  35970557 ttattttgcacacgcatccaatgatatgttgtcacgtcaattaataaatatgaaaacacataagcc-gtcatattcattaattgacgtgacaacacatga 35970459  T
Q  176 ttggatgcatatataaaataattataca 203  Q
    ||| |||||| | ||||||||| |||||    
T  35970458 ttgaatgcatgtgtaaaataatcataca 35970431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 35970438 - 35970544
Alignment:
Q  76 ttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcatgtgattgtcatattcataaattgacgtgacaactcatta 175  Q
    ||||||||||||| ||| |||| ||  |||||||||| ||||||||||||||||   | ||||| || ||||||| || |||||||||||||||  || |    
T  35970438 ttattttacacatgcattcaatcatgtgttgtcacgtcaattaatgaatatgacggcttatgtg-ttttcatatttattaattgacgtgacaacatatca 35970536  T
Q  176 ttggatgc 183  Q
    ||||||||    
T  35970537 ttggatgc 35970544  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 19710879 - 19710971
Alignment:
Q  47 attaattactatacacttacggtgtaaagttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcatgtg 139  Q
    ||||||| |||||||||  |||| ||||| |||||||||||| || ||||| ||  |||||||| | | ||||| |||||||||| |||||||    
T  19710879 attaatttctatacactgtcggtttaaagctattttacacatgcacccaatcatgtgttgtcacatcatttaataaatatgacaagtcatgtg 19710971  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 203
Target Start/End: Complemental strand, 23540304 - 23540178
Alignment:
Q  76 ttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcatgtgattgtcatattcataaattgacgtgacaactcatta 175  Q
    |||||||||||||| || |||| ||  |||||||| | ||||||| |||| |||||||||| | ||| |||||||||| ||| ||||||| ||| ||| |    
T  23540304 ttattttacacataaattcaatgatgcgttgtcacatcaattaataaataagacaattcatat-attttcatattcattaatagacgtgataacacatca 23540206  T
Q  176 ttggatgcatatataaaataattataca 203  Q
    || ||| ||| |  ||||||||||||||    
T  23540205 ttagatacatgtgcaaaataattataca 23540178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 33815841 - 33815748
Alignment:
Q  76 ttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcatgtgattgtcatattcataaattgacgtgacaac 169  Q
    ||||||||||||| |||| ||||||   ||||||| | |||||||||||| || |||  |||||||| ||||||||||  ||||| ||||||||    
T  33815841 ttattttacacatgcatcaaataatgtattgtcacatcaattaatgaatacgaaaatctatgtgattttcatattcatttattgatgtgacaac 33815748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 8770337 - 8770285
Alignment:
Q  76 ttattttacacatacatccaataataagttgtcacgttaattaatgaatatga 128  Q
    |||||||||||||| || ||||||||||||||||| | ||||||| |||||||    
T  8770337 ttattttacacatatattcaataataagttgtcacatcaattaataaatatga 8770285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 30017438 - 30017537
Alignment:
Q  103 gttgtcacgttaattaatgaatatgacaattcatgtgattgtcatattcataaattgacgtgacaactcattattggatgcatatataaaataattatac 202  Q
    |||| ||||| || ||||||||||| ||  |||||| ||| | |||||||| ||||||||||||||| |||  |||||||||| | |||||||||| |||    
T  30017438 gttgccacgtcaactaatgaatatgtcagctcatgt-attttgatattcattaattgacgtgacaacgcatcgttggatgcatgtgtaaaataattgtac 30017536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 44411244 - 44411127
Alignment:
Q  85 acatacatccaataataagttgtcacgttaattaatgaatatgacaattcatgtgattgtcatattcataaattgacgtgacaactca--ttattggatg 182  Q
    |||| ||| |||||||| | |||||| ||||||||||||||  |||| ||||||| || | |||||||| ||||  ||||||||| ||  ||||| ||||    
T  44411244 acatgcattcaataatatgatgtcacattaattaatgaatacaacaactcatgtg-tttttatattcattaattagcgtgacaacacatgttattagatg 44411146  T
Q  183 catatataaaataattata 201  Q
    ||| | |||||||||||||    
T  44411145 catgtgtaaaataattata 44411127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 18358793 - 18358901
Alignment:
Q  76 ttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcatgtgattgtcatattcataaattgacgtgacaactcatta 175  Q
    ||||||| ||||| |||| ||| ||  ||||||| || |||||||||||||||||| ||||||| || |||| ||||| |||| | |||  ||| ||| |    
T  18358793 ttattttgcacatgcatcaaatgatgtgttgtcatgtcaattaatgaatatgacaagtcatgtg-ttttcatgttcattaattaatgtggtaacacatca 18358891  T
Q  176 ttggatgcat 185  Q
    ||||||||||    
T  18358892 ttggatgcat 18358901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 45429370 - 45429262
Alignment:
Q  76 ttattttacacatacatccaataataagttgtcacgttaattaatgaatatgacaattcatgtgattgtcatattcataaattgacgtgacaactcatta 175  Q
    ||||||||||||| |||| ||| ||  |||| || || ||||||||||||||| |||  ||| || ||||| |||||| |||||||||  |||| ||| |    
T  45429370 ttattttacacatgcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgaga-tgtcacattcattaattgacgtagcaacacatca 45429272  T
Q  176 ttggatgcat 185  Q
    ||||||||||    
T  45429271 ttggatgcat 45429262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 7594200 - 7594167
Alignment:
Q  52 ttactatacacttacggtgtaaagttattttaca 85  Q
    |||||||||||| |||||||||||||||||||||    
T  7594200 ttactatacactgacggtgtaaagttattttaca 7594167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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