View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_38 (Length: 545)
Name: NF1137_low_38
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 224 - 532
Target Start/End: Complemental strand, 1560650 - 1560342
Alignment:
| Q |
224 |
catgtatttgttaaagtcttgattgaaaagtagtggaaaacatgcattgagaaggacgttagtcacatgagtttaccccaccttcaaactttgattttct |
323 |
Q |
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| T |
1560650 |
catgtatttgttaaagtcttgatggaaaagtagtggaaaacatgcattgagaaggacgttagtcacatgagtttaccccaccttcaaactttgattttct |
1560551 |
T |
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| Q |
324 |
atagcaatagaaagaatagagatttggtttgtcttttattgtgatgaaatctaataatttcaaaacgctttttatagttgcagattttctgaaaccaaat |
423 |
Q |
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| T |
1560550 |
atagcaatagaaagaatagggatttggtttgtcttttattgtgatgaaatctaataatttcaaaacgctttttatagttgcagattttctgaaaccaaat |
1560451 |
T |
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| Q |
424 |
catttaaccttcaaaacattcaatctttcctagctttagaacttagcgaaatactttgatactcaacaagtctatgtgatatcaatatttattttttatt |
523 |
Q |
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|||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1560450 |
cattaaaccttcaaaacattcaatctttcctagctatacaacttagcgaaatactttgatactcaacaagtctatgtgatatcaatattttttttttatt |
1560351 |
T |
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| Q |
524 |
gtgccatat |
532 |
Q |
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||||||||| |
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| T |
1560350 |
gtgccatat |
1560342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 30 - 189
Target Start/End: Complemental strand, 1560843 - 1560685
Alignment:
| Q |
30 |
ggttgttcatctttgctctgtgttatgcgtttctttggcgtttctccttaggttcgttcgcacttatgtcacggccccgtggaatcctttcaggagaagc |
129 |
Q |
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||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||| || || ||||||||||||| |||||||| |
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| T |
1560843 |
ggttgttcatctttgctctgtgttatgggcttctttggtgtttctccttaggttcgttcgcacttatgtcatggtcc-gtggaatcctttcgggagaagc |
1560745 |
T |
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| Q |
130 |
cattggaacttattagtggttgggtgtcggtctagtttccaattaaaggttaaggtcaag |
189 |
Q |
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| T |
1560744 |
cattggaacttattagtggttgggtgtcggtctagtttccaattaaaggttaaggtcaag |
1560685 |
T |
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