View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1137_low_4 (Length: 863)
Name: NF1137_low_4
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_4 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 754; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 9 - 834
Target Start/End: Complemental strand, 32937773 - 32936957
Alignment:
| Q |
9 |
caacaatatcacaagttatatcacctttttctccatcagattcccaaatacaaatcttcccaaaatcctttccaccttcaacaaaacaccttttcctcat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32937773 |
caacaatatcacaagttatatcacctttttctccatcagattcccaaatacaaatcttcccaaaatcctttccaccttcaacaaaacaccttttcctcat |
32937674 |
T |
|
| Q |
109 |
tgtcacagcaaaatcatcaccaggataaaaactcccattcaataaagaagattgaaaatcattattactattattattccaattcccaacatagcaactt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
32937673 |
tgtcacagcaaaatcatcaccaggataaaaactcccattcaataaagaagattgaaaatcattattatta---------caattcccaacatagcaactt |
32937583 |
T |
|
| Q |
209 |
ccatcaggccaagtaaacacaccttgccctttgggaacaccattctcccattcaccttcgtaacgattcccattcaaccaaacaagcgttcctcttccgt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
32937582 |
ccatcaggccaagtaaacacaccttgccctttgggaacaccattctcccattcaccttcataacgattcccattcaaccaaacaagagttcctcttccgt |
32937483 |
T |
|
| Q |
309 |
taataacaccgttcttccattcaccaatatactcattcccgtttttccaaacatacctcccttttccttcttgaacattcttcttccaccaaccttcata |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32937482 |
taataacaccgttcttccattcaccaatatactcattcccgtttttccaaacatacctcccttttccttcttgaacattcttcttccaccaaccttcata |
32937383 |
T |
|
| Q |
409 |
ataatcaccgttaccataacgtttctttccgtaaccgttttttctatcggaactccatgaaccactgtaaatatctccgtcggatccagtaaacgttcca |
508 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |
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|
| T |
32937382 |
ataatcaccgttaacataacgtttctttccgtaaccgttttttctatcggaactccatgaaccactgtaaatatcaccgtcggatccggtaaaagttcca |
32937283 |
T |
|
| Q |
509 |
gaaccttccattttacctaacttaaactcgccttcgtaaatagaacctgaaggccacgagaattttccatttccggaagcttttcctcgtttccattcac |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32937282 |
gaaccttccattttacctaacttaaactcgccttcgtaaatagaacctgaaggccacgagaatttaccatttccggaagcttttcctcgtttccattcac |
32937183 |
T |
|
| Q |
609 |
cttcgtagatacaaccatcgttccatgtatattttcctgatccgtttggtgtgttgttgccggagaaagttcccatgtaagaatcaccgttgggtaaatg |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
32937182 |
cttcgtagatacaaccatcgttccatgtatattttcctgatccgtttggtgtgttgttgccggagaaagttcccatataagaatcaccgttgggtaaatg |
32937083 |
T |
|
| Q |
709 |
ctttttcgctgttcttttggttttttcgaattcgattgttatgcttgttggtgagattttccggctgctaaagtgtgaccgggtgcggccgctggtagca |
808 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
32937082 |
ctttttcgctgttcttttggttttttcgaattcgattgttatgcttgttggtgagattttccggctgctaaagtgtgaccgggtgcggccggtggtagca |
32936983 |
T |
|
| Q |
809 |
accggcggctgtgagtctgagctgct |
834 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
32936982 |
accggcggctgtgagtctgagctgct |
32936957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 325 - 634
Target Start/End: Complemental strand, 24523403 - 24523094
Alignment:
| Q |
325 |
ccattcaccaatatactcattcccgtttttccaaacatacctcccttttccttcttgaacattcttcttccaccaaccttcataataatcaccgttacca |
424 |
Q |
| |
|
||||||||||| |||||||||||| || |||||||| || | |||| || |||||||| || ||||||||| ||||| || |||||||||| | |
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|
| T |
24523403 |
ccattcaccaacatactcattcccattcttccaaacgtaacgtccttgaccatcttgaacgttacgcttccaccacccttcgtataaatcaccgttcgcg |
24523304 |
T |
|
| Q |
425 |
taacgtttctttccgtaaccgttttttctatcggaactccatgaaccactgtaaatatctccgtcggatccagtaaacgttccagaaccttccattttac |
524 |
Q |
| |
|
|||||||||| ||| | |||| |||||||||||| |||||||| |||| || |||| |||||||||||| || ||||| | ||||||||| || |
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|
| T |
24523303 |
taacgtttctgaccgaacccgtgttttctatcggagctccatgacccacgatatgtatcaccgtcggatccaacgaatgttccgaatccttccattcgac |
24523204 |
T |
|
| Q |
525 |
ctaacttaaactcgccttcgtaaatagaacctgaaggccacgagaattttccatttccggaagcttttcctcgtttccattcaccttcgtagatacaacc |
624 |
Q |
| |
|
| |||| ||||| || |||||| | | ||||||||||| || ||||| || || || |||||||| ||||||||||||||||||||||| || ||||| |
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|
| T |
24523203 |
ccgacttgaactctccctcgtaagtcgcgcctgaaggccatgaaaatttccctttccctgaagctttacctcgtttccattcaccttcgtacatgcaacc |
24523104 |
T |
|
| Q |
625 |
atcgttccat |
634 |
Q |
| |
|
||| ||||| |
|
|
| T |
24523103 |
gtcggtccat |
24523094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 24523689 - 24523634
Alignment:
| Q |
9 |
caacaatatcacaagttatatcacctttttctccatcagattcccaaatacaaatc |
64 |
Q |
| |
|
|||||||||||||||| |||||||| ||| || ||||||||||||||||||||| |
|
|
| T |
24523689 |
caacaatatcacaagtaatatcaccagcttcaccttcagattcccaaatacaaatc |
24523634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 323 - 456
Target Start/End: Original strand, 39807601 - 39807734
Alignment:
| Q |
323 |
ttccattcaccaatatactcattcccgtttttccaaacatacctcccttttccttcttgaacattcttcttccaccaaccttcataataatcaccgttac |
422 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||| |||| || ||||| | || | ||||||| |||||||| |||||| |||| |
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|
| T |
39807601 |
ttccattcaccaacatactcattcccgtttttccacacataccttccttcaccatcttgcaagttacacctccaccatccttcatacacatcaccattac |
39807700 |
T |
|
| Q |
423 |
cataacgtttctttccgtaaccgttttttctatc |
456 |
Q |
| |
|
||||||||||| ||| | || ||||||||||| |
|
|
| T |
39807701 |
tataacgtttctcaccgaacccattttttctatc |
39807734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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