View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_40 (Length: 543)
Name: NF1137_low_40
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 110 - 287
Target Start/End: Original strand, 34578837 - 34579015
Alignment:
| Q |
110 |
aaaaccct-aaatcattccaataccagaatagtaactagtcaataaccctaagcacgttcaccacggatacgatgagcaagttgaatatgcttaaccata |
208 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||| |
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| T |
34578837 |
aaaaccctgaaatcattccaataccagaatagtaactagtctataaccctaagctcgttcaccacggatacgacgagcaagttgaatatccttcaccata |
34578936 |
T |
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| Q |
209 |
acggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactacttcct |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34578937 |
acggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcct |
34579015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 110 - 287
Target Start/End: Original strand, 34584587 - 34584764
Alignment:
| Q |
110 |
aaaaccctaaatcattccaataccagaatagtaactagtcaataaccctaagcacgttcaccacggatacgatgagcaagttgaatatgcttaaccataa |
209 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||||| |
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| T |
34584587 |
aaaaccctaggtcattccaataccagaatagtaactagtctataaccctaagctcgttcaccacggatacgacgagcaagttgaatatccttcaccataa |
34584686 |
T |
|
| Q |
210 |
cggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactacttcct |
287 |
Q |
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| T |
34584687 |
cggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcct |
34584764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 111 - 287
Target Start/End: Original strand, 34571367 - 34571547
Alignment:
| Q |
111 |
aaaccctaaatcattccaataccagaatagtaactag----tcaataaccctaagcacgttcaccacggatacgatgagcaagttgaatatgcttaacca |
206 |
Q |
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|||||||||||||| ||||||| |||||| |||||| || ||| |||||||||||||||||||||||||| ||||||||||||||| |||| || |
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| T |
34571367 |
aaaccctaaatcataccaatactagaatactaactaactaatccatagccctaagcacgttcaccacggatacggcgagcaagttgaatatccttaggca |
34571466 |
T |
|
| Q |
207 |
taacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactacttcct |
287 |
Q |
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||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||| |
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| T |
34571467 |
taatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcct |
34571547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 136 - 287
Target Start/End: Original strand, 34562599 - 34562753
Alignment:
| Q |
136 |
aatagtaactagtcaataaccctaagcacg---ttcaccacggatacgatgagcaagttgaatatgcttaaccataacggtgatcctcttagcatgaatt |
232 |
Q |
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|||| |||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| |||| ||||| ||| | |||||||||||||||| |
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| T |
34562599 |
aatactaactagtcaataaccctaaccacgacgttcaccacggatacggcaagcaagttgaatatccttaggcataatggtaaccctcttagcatgaatt |
34562698 |
T |
|
| Q |
233 |
gcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactacttcct |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| || |||||| |
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| T |
34562699 |
gcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcct |
34562753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 276
Target Start/End: Complemental strand, 13576477 - 13576386
Alignment:
| Q |
185 |
gcaagttgaatatgcttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttc |
276 |
Q |
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|
||||||||||||| |||| ||||| || | ||||||||||||||| ||||| | ||| |||||||||||||||||||| | ||||||||| |
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| T |
13576477 |
gcaagttgaatatccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagataagcttc |
13576386 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 155 - 276
Target Start/End: Complemental strand, 41944103 - 41943982
Alignment:
| Q |
155 |
ccctaagcacgttcaccacggatacgatgagcaagttgaatatgcttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaa |
254 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||||||||||| | ||| ||||| || | |||||||||||||||||||||||||||||||||||||| |
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| T |
41944103 |
ccctaagcacgttcaccacgaatacggcgtgcaagttgaatgtcctttggcataattgtaaccctcttagcatgaattgcacacaaattggtatcctcaa |
41944004 |
T |
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| Q |
255 |
acaaaccaaccaaataagcttc |
276 |
Q |
| |
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|||| ||||||| ||||||||| |
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| T |
41944003 |
acaatccaaccagataagcttc |
41943982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 25865863 - 25865756
Alignment:
| Q |
151 |
ataaccctaagcacgttcaccacggatacgatgagcaagttgaatatgcttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcc |
250 |
Q |
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|||||||||||||||||||||||| |||||| ||||||| ||||||| ||| ||||| || | ||||||||||||||||||||||||||| |||||| |
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| T |
25865863 |
ataaccctaagcacgttcaccacgaatacgacgagcaagctgaatatcctttggcataatcgttaccctcttagcatgaattgcacacaaattagtatcc |
25865764 |
T |
|
| Q |
251 |
tcaaacaa |
258 |
Q |
| |
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|||||||| |
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| T |
25865763 |
tcaaacaa |
25865756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 44344110 - 44344011
Alignment:
| Q |
151 |
ataaccctaagcacgttcaccacggatacgatgagcaagttgaatatgcttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcc |
250 |
Q |
| |
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||||||||||||||||||||||||||||| || ||||||| ||| ||||| || | ||||||||||||||| |||||||||||||||||| |
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| T |
44344110 |
ataaccctaagcacgttcaccacggatac--------agctgaatatccttgggcataatcgtcaccctcttagcatgaatagcacacaaattggtatcc |
44344019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 7594101 - 7594211
Alignment:
| Q |
156 |
cctaagcacgttcaccacggatacgatgagcaagttgaatatgcttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaa |
255 |
Q |
| |
|
||||||||||||||||||| || ||| ||||||| ||||||| ||| ||||| || | ||||||||||||||||||||||| |||||| |||||||| |
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| T |
7594101 |
cctaagcacgttcaccacgaatgcgacgagcaagctgaatatcctttggcataattgtcaccctcttagcatgaattgcacacagattggtgtcctcaaa |
7594200 |
T |
|
| Q |
256 |
caaaccaacca |
266 |
Q |
| |
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||| ||||||| |
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| T |
7594201 |
caatccaacca |
7594211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 12546996 - 12547089
Alignment:
| Q |
183 |
gagcaagttgaatatgcttaaccataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttc |
276 |
Q |
| |
|
||||||||||||||| |||| ||| | || | ||||||||||||||| ||||| | ||| ||||| |||||||||||||| | ||||||||| |
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| T |
12546996 |
gagcaagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttc |
12547089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 12531589 - 12531530
Alignment:
| Q |
217 |
cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttc |
276 |
Q |
| |
|
||||||||||||||| ||||| | ||| ||||| |||||||||||||| | ||||||||| |
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|
| T |
12531589 |
cctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttc |
12531530 |
T |
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