View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_42 (Length: 533)
Name: NF1137_low_42
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 30 - 518
Target Start/End: Original strand, 23914889 - 23915377
Alignment:
| Q |
30 |
aagaatttggttcaacttttaggttggtgtgttgagaaaggtgaattgttacttgtgtatgagtttatggccaatggtagtttagataagtttcttcata |
129 |
Q |
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| T |
23914889 |
aagaatttggttcaacttttaggttggtgtgttgagaaaggtgaattgttacttgtgtatgagtttatggttaatggtagtttagataagtttcttcata |
23914988 |
T |
|
| Q |
130 |
gagaattatctcatgagtgtgatattttgttgagttgggttcaaagatttaacattgttgtagggttggcttctgttttagcttatttgcatcaagaatg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23914989 |
gagaattatctcatgagtgtgatattttgttgagttgggttcaaagatttaacattgttgtagggttggcttctgttttagcttatttgcatcaagaatg |
23915088 |
T |
|
| Q |
230 |
tgagcaaagagtgattcatagagatattaagacggcgaatatattgctagatggaaatttgaatccaaggttaggtgattttggattggcaaaacttatg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915089 |
tgagcaaagagtgattcatagagatattaagacggcaaatatattgctagatggaaatttgaatccaaggttaggtgattttggattggcaaaacttatg |
23915188 |
T |
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| Q |
330 |
gatcatgatatgagtccggtttcgacgttaaccgccggaacaatgggatacctagctcctgagtatctacaatacggtaaagcaaccgacaaaaccgatg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915189 |
gatcatgatatgagtccggtttcgacgttaaccgccggaacaatgggatacctagctcctgagtatctacaatacggtaaagcaaccgacaaaaccgatg |
23915288 |
T |
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| Q |
430 |
tttttagcttcggagtcgttgttcttgaagttgcttgtggtagaaggccaattgagaaagaaggtcaagaaatggtgaatttggttgat |
518 |
Q |
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| T |
23915289 |
tttttagcttcggagtcgttgttcttgaagttgcttgtggtagaaggccaattgagaaagaaggtcaagaaatggtgaatttggttgat |
23915377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 297 - 484
Target Start/End: Original strand, 1225309 - 1225496
Alignment:
| Q |
297 |
aggttaggtgattttggattggcaaaacttatggatcatgatatgagtccggtttcgacgttaaccgccggaacaatgggatacctagctcctgagtatc |
396 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||| |||||| ||||| || ||||| || ||||||||||||||||| || ||||| |||| |
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| T |
1225309 |
aggttaggtgattttggattggctaaactcatggatcatgataagagtcctgtttcaactttaactgctggaacaatgggataccttgcacctgaatatc |
1225408 |
T |
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| Q |
397 |
tacaatacggtaaagcaaccgacaaaaccgatgtttttagcttcggagtcgttgttcttgaagttgcttgtggtagaaggccaattga |
484 |
Q |
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| T |
1225409 |
ttcaatatggtaaagctactgataagactgatgttttcagctttggtgtggttgtgcttgaagtggcttgtgggaaaaggcctattga |
1225496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 1225249 - 1225289
Alignment:
| Q |
219 |
catcaagaatgtgagcaaagagtgattcatagagatattaa |
259 |
Q |
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| T |
1225249 |
catcaggaatgtgagcaaagagtggttcatagagatattaa |
1225289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 183 - 484
Target Start/End: Original strand, 41963760 - 41964061
Alignment:
| Q |
183 |
attgttgtagggttggcttctgttttagcttatttgcatcaagaatgtgagcaaagagtgattcatagagatattaagacggcgaatatattgctagatg |
282 |
Q |
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|||||||| || ||||||||||| || | |||| | ||||| |||||||||||||||||| |||||||||||||||| || | |||| | ||||| |||| |
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| T |
41963760 |
attgttgttggtttggcttctgtattggtttatcttcatcaggaatgtgagcaaagagtggttcatagagatattaaaactgggaatgttttgctggatg |
41963859 |
T |
|
| Q |
283 |
gaaatttgaatccaaggttaggtgattttggattggcaaaacttatggatcatgatatgagtccggtttcgacgttaaccgccggaacaatgggatacct |
382 |
Q |
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| T |
41963860 |
ggaatttcaatgctaggttaggtgattttggattggctaaactcatggatcatgataagagtcctgtttcaactttaactgctggaacaatgggatacct |
41963959 |
T |
|
| Q |
383 |
agctcctgagtatctacaatacggtaaagcaaccgacaaaaccgatgtttttagcttcggagtcgttgttcttgaagttgcttgtggtagaaggccaatt |
482 |
Q |
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|| ||||| ||||| ||||| |||||||| || || || || |||||||| ||||| || || ||||| |||||||| |||||||| | |||||| ||| |
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| T |
41963960 |
tgcacctgaatatcttcaatatggtaaagctactgataagactgatgttttcagctttggtgtggttgtgcttgaagtggcttgtgggaaaaggcctatt |
41964059 |
T |
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| Q |
483 |
ga |
484 |
Q |
| |
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|| |
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| T |
41964060 |
ga |
41964061 |
T |
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