View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_45 (Length: 528)
Name: NF1137_low_45
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_45 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 28 - 518
Target Start/End: Complemental strand, 906694 - 906204
Alignment:
| Q |
28 |
caaaacttgcaaaaatttcaccaatattctgttaagcacatactgactggaagtgcttgacatagttgtnnnnnnntggaagtaaatagtggtaaaatca |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
906694 |
caaaacttgcaaaaatttcaccaatattctgttaagcacatactgactggaagtgcttgacatagttgtaaaaaaatggaaataaatagtggtaaaatca |
906595 |
T |
|
| Q |
128 |
gcctgctttacaaaatggagcacgattggttaatcatcatcacagtgatgaaaatagcttatttgtataaatcattgatccttactagtagaaggcttac |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
906594 |
gcctgctttacaaaatggagcacgattggttaatcatcatcacagtgatgaaaatagcttatttgtataaatcattgatccttactagtagaaagcttac |
906495 |
T |
|
| Q |
228 |
tgtaaacatgtacaagacaaaaatgtatacacatgacgttcaaaagttatgtaatttcaatgctaaagaagagagtgctttcctagatgaaccatgttca |
327 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
906494 |
tgtaaacatgtacaagacaaaaatgtatacacatgccgttcaaaagttatgtaatttcaatgctaaagaagagagtgctttcctagatgaaccatgttca |
906395 |
T |
|
| Q |
328 |
cttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaactt |
427 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
906394 |
cttgttgcaacagcagcaccatcactcaattctttaattctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaactt |
906295 |
T |
|
| Q |
428 |
cctctcttttcactatcccactttcatcgtcaacctttggcctcacagccactttgagcacatctgtcaataatctcgcattcatcctttg |
518 |
Q |
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| T |
906294 |
cctctcttttcactatcccactttcatcatcaacctttggcctcacagccactttgagcacatctgtcaataatctcgcattcatcctttg |
906204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 267 - 518
Target Start/End: Original strand, 894188 - 894439
Alignment:
| Q |
267 |
tcaaaagttatgtaatttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgatt |
366 |
Q |
| |
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||||||||| || ||| || ||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| |||||||||| || ||| |
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| T |
894188 |
tcaaaagttttgcaatctcgatgctaaagaagagagtgccttcttagatgaaccattttcacttgttgcaacagcagcaccaacactcaattccttaatt |
894287 |
T |
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| Q |
367 |
ctcttttgtatctccaagctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttg |
466 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||| ||||| |
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| T |
894288 |
ctcttttgtatttccaagctttcatcaccttccatgattctctttacacagttggcaacttcttctcttttcactatcccactttcatcatcaatctttg |
894387 |
T |
|
| Q |
467 |
gcctcacagccactttgagcacatctgtcaataatctcgcattcatcctttg |
518 |
Q |
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| T |
894388 |
gcctcacagccaccttgagctcatctgtcaataatttggcattcatcctttg |
894439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 283 - 520
Target Start/End: Complemental strand, 1717 - 1480
Alignment:
| Q |
283 |
ttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctcca |
382 |
Q |
| |
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|||||||||| || |||||||||||||||||| |||||||| |||||| | | |||||||| | ||||||||||||||||| ||||| | || || | |
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| T |
1717 |
ttcaatgctagagtagagagtgctttcctagaagaaccatgctcacttagtactgtagcagcactaacactcaattctttgattttctttcgaatttcaa |
1618 |
T |
|
| Q |
383 |
agctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttggcctcacagccacttt |
482 |
Q |
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| T |
1617 |
agctttcatctccttccatgattctctttaaagctttggagacttcctctcgttttattatcccagtttcaccatcaacctttggccttactgccacttt |
1518 |
T |
|
| Q |
483 |
gagcacatctgtcaataatctcgcattcatcctttgct |
520 |
Q |
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|||||||| || | |||| | |||||||| ||||||| |
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| T |
1517 |
tagcacatcagtgagtaattttgcattcattctttgct |
1480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 283 - 520
Target Start/End: Complemental strand, 33257599 - 33257362
Alignment:
| Q |
283 |
ttcaatgctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctcca |
382 |
Q |
| |
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|||||||||| || |||||||||||||||||| |||||||| |||||| | | |||||||| | ||||||||||||||||| ||||| | || || | |
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| T |
33257599 |
ttcaatgctagagtagagagtgctttcctagaagaaccatgctcacttagtactgtagcagcactaacactcaattctttgattttctttcgaatttcaa |
33257500 |
T |
|
| Q |
383 |
agctttcatcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttggcctcacagccacttt |
482 |
Q |
| |
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|||||||||| ||||||||||||||||||| | ||| | |||||||||| ||| | ||||||| ||||| | |||||||||||||| || |||||||| |
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| T |
33257499 |
agctttcatctccttccatgattctctttaaagctttggagacttcctctcgttttattatcccagtttcaccatcaacctttggccttactgccacttt |
33257400 |
T |
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| Q |
483 |
gagcacatctgtcaataatctcgcattcatcctttgct |
520 |
Q |
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| T |
33257399 |
tagcacatcagtgagtaattttgcattcattctttgct |
33257362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 289 - 520
Target Start/End: Original strand, 8294162 - 8294393
Alignment:
| Q |
289 |
gctaaagaagagagtgctttcctagatgaaccatgttcacttgttgcaacagcagcaccatcactcaattctttgattctcttttgtatctccaagcttt |
388 |
Q |
| |
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|||| |||||| |||||||||||||| |||||||| |||||| || |||||||||| ||||||||||||||||| ||||| || || ||||||| |
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| T |
8294162 |
gctagagaagaaagtgctttcctagaagaaccatgctcacttagcacagtagcagcaccaacactcaattctttgattttctttctaatttcaaagcttt |
8294261 |
T |
|
| Q |
389 |
catcaccttccatgattctctttacacatttagcaacttcctctcttttcactatcccactttcatcgtcaacctttggcctcacagccactttgagcac |
488 |
Q |
| |
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|||| |||| ||||||||| |||| | ||| |||||||||||| ||| | |||||| ||||||| ||||||||||||||||| ||||||||||| || |
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| T |
8294262 |
catctcctttcatgattctttttatagctttggcaacttcctcttgttttataatcccagtttcatcatcaacctttggcctcactgccactttgagtac |
8294361 |
T |
|
| Q |
489 |
atctgtcaataatctcgcattcatcctttgct |
520 |
Q |
| |
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||| || | |||| | |||||||||||||||| |
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| T |
8294362 |
atcagtgagtaattttgcattcatcctttgct |
8294393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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