View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1137_low_47 (Length: 509)

Name: NF1137_low_47
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1137_low_47
NF1137_low_47
[»] chr5 (11 HSPs)
chr5 (30-410)||(17087992-17088365)
chr5 (30-116)||(38683591-38683677)
chr5 (354-403)||(39698565-39698614)
chr5 (316-403)||(19579688-19579774)
chr5 (356-403)||(21542056-21542103)
chr5 (290-382)||(14674231-14674321)
chr5 (316-403)||(37328830-37328916)
chr5 (356-403)||(21522776-21522823)
chr5 (356-403)||(21533342-21533389)
chr5 (316-399)||(21351895-21351977)
chr5 (354-382)||(33178049-33178077)
[»] chr3 (8 HSPs)
chr3 (354-403)||(14209137-14209186)
chr3 (354-399)||(1509563-1509608)
chr3 (316-393)||(14747548-14747625)
chr3 (316-382)||(55401062-55401127)
chr3 (354-388)||(10268487-10268521)
chr3 (355-397)||(17276750-17276792)
chr3 (354-403)||(14832123-14832172)
chr3 (354-403)||(34910341-34910390)
[»] chr1 (11 HSPs)
chr1 (354-408)||(15449213-15449267)
chr1 (354-403)||(47989521-47989570)
chr1 (354-403)||(25361910-25361959)
chr1 (354-403)||(31694696-31694745)
chr1 (356-403)||(6612157-6612204)
chr1 (355-393)||(2218264-2218302)
chr1 (327-382)||(51410022-51410077)
chr1 (354-403)||(44482254-44482303)
chr1 (354-382)||(14359529-14359557)
chr1 (354-382)||(22515894-22515922)
chr1 (354-382)||(22881623-22881651)
[»] scaffold0136 (1 HSPs)
scaffold0136 (354-403)||(3835-3884)
[»] chr8 (11 HSPs)
chr8 (354-403)||(2572042-2572091)
chr8 (354-403)||(15816115-15816164)
chr8 (354-390)||(8343340-8343376)
chr8 (367-403)||(27067286-27067322)
chr8 (354-388)||(22197743-22197777)
chr8 (354-403)||(22652000-22652049)
chr8 (354-399)||(24362192-24362237)
chr8 (354-399)||(25566865-25566910)
chr8 (354-382)||(8342996-8343024)
chr8 (354-382)||(20873093-20873121)
chr8 (367-403)||(24764811-24764847)
[»] chr7 (7 HSPs)
chr7 (354-403)||(24339666-24339715)
chr7 (354-403)||(2334274-2334322)
chr7 (354-399)||(9408324-9408369)
chr7 (358-403)||(11272572-11272617)
chr7 (354-398)||(18039023-18039067)
chr7 (354-399)||(21560527-21560572)
chr7 (354-399)||(26033451-26033496)
[»] chr6 (14 HSPs)
chr6 (354-403)||(16766721-16766770)
chr6 (290-380)||(17841598-17841686)
chr6 (356-403)||(21395294-21395341)
chr6 (354-403)||(9107356-9107405)
chr6 (354-402)||(9522915-9522963)
chr6 (356-404)||(16111742-16111790)
chr6 (356-395)||(12696350-12696389)
chr6 (354-392)||(31384944-31384982)
chr6 (354-403)||(5970094-5970143)
chr6 (354-403)||(8365505-8365554)
chr6 (354-403)||(8714004-8714053)
chr6 (354-403)||(33340371-33340420)
chr6 (354-403)||(35125678-35125727)
chr6 (316-393)||(17302543-17302620)
[»] scaffold0223 (1 HSPs)
scaffold0223 (354-397)||(20196-20239)
[»] scaffold0086 (1 HSPs)
scaffold0086 (354-396)||(2952-2994)
[»] scaffold0171 (1 HSPs)
scaffold0171 (354-403)||(23535-23584)
[»] scaffold0019 (1 HSPs)
scaffold0019 (354-403)||(71749-71798)
[»] chr4 (6 HSPs)
chr4 (354-399)||(4383391-4383436)
chr4 (356-400)||(51701284-51701328)
chr4 (357-395)||(3947760-3947798)
chr4 (354-392)||(27706174-27706212)
chr4 (354-382)||(6485618-6485646)
chr4 (358-406)||(30838238-30838286)
[»] chr2 (7 HSPs)
chr2 (354-403)||(30717516-30717565)
chr2 (358-399)||(4882686-4882727)
chr2 (354-403)||(34784968-34785017)
chr2 (354-403)||(37419767-37419816)
chr2 (354-406)||(15657888-15657940)
chr2 (354-398)||(23058433-23058477)
chr2 (354-394)||(33153448-33153488)
[»] scaffold0008 (1 HSPs)
scaffold0008 (355-399)||(263362-263406)
[»] scaffold0057 (1 HSPs)
scaffold0057 (357-403)||(24052-24097)
[»] scaffold0044 (1 HSPs)
scaffold0044 (354-403)||(53204-53253)
[»] scaffold0003 (1 HSPs)
scaffold0003 (354-403)||(241618-241667)
[»] scaffold0011 (1 HSPs)
scaffold0011 (354-382)||(17756-17784)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 30 - 410
Target Start/End: Original strand, 17087992 - 17088365
Alignment:
Q  30 ataggttcttcttgattttttattcgttattactcacaatcacaaatatcacttcctgttgtttaaagtttcgatttttaagatacccatgttagattgt 129  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17087992 ataggttcttcttgattttttattcgt-attactcacaatcacaaatatcacttcctgttgtttaaagtttcgatttttaagatacccattttagattgt 17088090  T
Q  130 tttcttggttcttcttgatttcacttattagattgtttgcattctatgtttt-tgggttattgattccatgtttattttttggaagctatttatattgac 228  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  17088091 tttcttggttcttcttgatttcacttgttagattgtttgcattctatgttttttgggttattgtttccatgtttattttttggaagctatttatattgac 17088190  T
Q  229 ttatgtagaagcaatcgacacttcacgtacattcatatttttgtccacaatgtccatatatctatgaagcactgatactgacagggcacactgatacacc 328  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||     
T  17088191 ttatgtagaagcaattgacatttcacgtacattcatatttttgtccacaatgtccatatatctatgaagcactgatactgacagg-------gacacact 17088283  T
Q  329 gacacatctaataatttgnnnnnnntcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggacgcgtgtc 410  Q
    ||||||||||||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  17088284 gacacatctaataatttgaaaaaaatcacataatttagtgtgattacaagtgtcactgtcgtgtcggtgtcggtcacgtgtc 17088365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 38683591 - 38683677
Alignment:
Q  30 ataggttcttcttgattttttattcgttattactcacaatcacaaatatcactt-cctgttgtttaaagtttcgatttttaagatacc 116  Q
    ||||||||||||||||| || |||  |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  38683591 ataggttcttcttgattcttgattt-ttattactcacaatcagaaatatcacttacctgttgtttaaagtttcgatttttaagatacc 38683677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 39698565 - 39698614
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  39698565 tcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggac 39698614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 403
Target Start/End: Original strand, 19579688 - 19579774
Alignment:
Q  316 acactgatacaccgacacatctaataatttgnnnnnnntcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| |||||||| |||||||||||       ||||||||||||||| |||||||||||||  ||||||||| |||||||||    
T  19579688 acactgatacgccgacacagctaataatttgagaaaa-tcacataatttagtgcaattacaagtgtcggtgtcgtgtcagtgtcggac 19579774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 403
Target Start/End: Original strand, 21542056 - 21542103
Alignment:
Q  356 acataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||| ||||||||||||||||||  |||||||||||||||||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggac 21542103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 382
Target Start/End: Original strand, 14674231 - 14674321
Alignment:
Q  290 ctatgaagcactgatactgacagggcacactgatacaccgacacatctaataatttgnnnnnnntcacataatttagtgtaattacaagtgtc 382  Q
    ||||||||||| ||||| |||| || ||||||| || |||||||| |||||||||||       |||||||||||||||||||||||||||||    
T  14674231 ctatgaagcacggatacagacacgg-acactgacacgccgacacagctaataatttgaaaaaa-tcacataatttagtgtaattacaagtgtc 14674321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 403
Target Start/End: Complemental strand, 37328916 - 37328830
Alignment:
Q  316 acactgatacaccgacacatctaataatttgnnnnnnntcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    ||||||||||||||||||| | |||||||||       ||||| |||| |||||||||||| |||||  |||||||||||||||||||    
T  37328916 acactgatacaccgacacagcaaataatttgtaaaaa-tcacaaaattcagtgtaattacatgtgtcggtgtcgtgtcggtgtcggac 37328830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 403
Target Start/End: Original strand, 21522776 - 21522823
Alignment:
Q  356 acataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||| ||||||||||||| ||||  |||||||||||||||||||    
T  21522776 acataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggac 21522823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 403
Target Start/End: Original strand, 21533342 - 21533389
Alignment:
Q  356 acataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||| ||||||||||||| ||||  |||||||||||||||||||    
T  21533342 acataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggac 21533389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 21351977 - 21351895
Alignment:
Q  316 acactgatacaccgacacatctaataatttgnnnnnnntcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtc 399  Q
    ||||||| ||||||||||| ||||||||| |       |||||||||| ||||||||||||||||||  |||| ||||||||||    
T  21351977 acactgacacaccgacacaactaataatt-ggaaaaagtcacataattcagtgtaattacaagtgtcggtgtcatgtcggtgtc 21351895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 382
Target Start/End: Original strand, 33178049 - 33178077
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtc 382  Q
    |||||||||||||||||||||||||||||    
T  33178049 tcacataatttagtgtaattacaagtgtc 33178077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 14209137 - 14209186
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  14209137 tcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggac 14209186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 1509563 - 1509608
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtc 399  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||    
T  1509563 tcacataatttagtgtaattacaagtgtcggtgtcgtttcggtgtc 1509608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 393
Target Start/End: Original strand, 14747548 - 14747625
Alignment:
Q  316 acactgatacaccgacacatctaataatttgnnnnnnntcacataatttagtgtaattacaagtgtcactgtcgtgtc 393  Q
    ||||||| || |||||||| |||||||||||       ||||||||||||||||||||||||| |||  |||||||||    
T  14747548 acactgacacgccgacacagctaataatttgaaaaaaatcacataatttagtgtaattacaagggtccgtgtcgtgtc 14747625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 55401062 - 55401127
Alignment:
Q  316 acactgatacaccgacacatctaataatttgnnnnnnntcacataatttagtgtaattacaagtgtc 382  Q
    |||||||||| |||||||| |||||||||||       |||||||||||||||||||||||||||||    
T  55401062 acactgatacgccgacacaactaataatttgaaaaaa-tcacataatttagtgtaattacaagtgtc 55401127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 388
Target Start/End: Complemental strand, 10268521 - 10268487
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtc 388  Q
    |||||||||||||||||||||||||||||| ||||    
T  10268521 tcacataatttagtgtaattacaagtgtcagtgtc 10268487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 397
Target Start/End: Original strand, 17276750 - 17276792
Alignment:
Q  355 cacataatttagtgtaattacaagtgtcactgtcgtgtcggtg 397  Q
    |||||||||| || ||||||||||||||| |||||||||||||    
T  17276750 cacataatttggtataattacaagtgtcagtgtcgtgtcggtg 17276792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 14832123 - 14832172
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||| | | ||||||||||||||||| |||||||||||| ||||||    
T  14832123 tcacataactcaatgtaattacaagtgtcagtgtcgtgtcggtatcggac 14832172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 34910341 - 34910390
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| |||||||||||||| |||  |||||| ||||||||||||    
T  34910341 tcacataattcagtgtaattacaagagtcggtgtcgtatcggtgtcggac 34910390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 15449267 - 15449213
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggacgcgtg 408  Q
    |||||||||||||||||||||||||||||  |||||| |||||||||||| ||||    
T  15449267 tcacataatttagtgtaattacaagtgtctgtgtcgtatcggtgtcggacacgtg 15449213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 47989521 - 47989570
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  47989521 tcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggac 47989570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 25361910 - 25361959
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| |||||||||| | |||||| |||||||||||||||||||    
T  25361910 tcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggac 25361959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 31694745 - 31694696
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| ||| ||||||||||||||  |||||||||||||||||||    
T  31694745 tcacataattcagtataattacaagtgtcggtgtcgtgtcggtgtcggac 31694696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 403
Target Start/End: Complemental strand, 6612204 - 6612157
Alignment:
Q  356 acataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||| ||||||||||||||||||  |||||||||| ||||||||    
T  6612204 acataattcagtgtaattacaagtgtcggtgtcgtgtcgatgtcggac 6612157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 2218264 - 2218302
Alignment:
Q  355 cacataatttagtgtaattacaagtgtcactgtcgtgtc 393  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  2218264 cacataatttagtgtaattacaagtgtcggtgtcgtgtc 2218302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 51410022 - 51410077
Alignment:
Q  327 ccgacacatctaataatttgnnnnnnntcacataatttagtgtaattacaagtgtc 382  Q
    ||||||||||||||||||||       |||||||||| ||||||||||||||||||    
T  51410022 ccgacacatctaataatttgaaaaaaatcacataattcagtgtaattacaagtgtc 51410077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 44482254 - 44482303
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| |||||||||| | |||||  |||||||||||||||||||    
T  44482254 tcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggac 44482303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 382
Target Start/End: Complemental strand, 14359557 - 14359529
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtc 382  Q
    |||||||||||||||||||||||||||||    
T  14359557 tcacataatttagtgtaattacaagtgtc 14359529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 382
Target Start/End: Complemental strand, 22515922 - 22515894
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtc 382  Q
    |||||||||||||||||||||||||||||    
T  22515922 tcacataatttagtgtaattacaagtgtc 22515894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 382
Target Start/End: Complemental strand, 22881651 - 22881623
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtc 382  Q
    |||||||||||||||||||||||||||||    
T  22881651 tcacataatttagtgtaattacaagtgtc 22881623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 3884 - 3835
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  3884 tcacataattcagtgtaattacaagtgtcagtgtcgtgttggtgtcggac 3835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 2572091 - 2572042
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  2572091 tcacataatttagtgtaattacaagtgtcggtgtcgtgtctgtgtcggac 2572042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 15816164 - 15816115
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||||||    
T  15816164 tcacataatttagtgtaattataagtgtcggtgtcgtgttggtgtcggac 15816115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 8343340 - 8343376
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgt 390  Q
    |||||||||||||||||||||||||||||| ||||||    
T  8343340 tcacataatttagtgtaattacaagtgtcagtgtcgt 8343376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 403
Target Start/End: Complemental strand, 27067322 - 27067286
Alignment:
Q  367 tgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    ||||||||||||||||| |||||||||||||||||||    
T  27067322 tgtaattacaagtgtcagtgtcgtgtcggtgtcggac 27067286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 388
Target Start/End: Complemental strand, 22197777 - 22197743
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtc 388  Q
    |||||||||||||||||||||||||||||| ||||    
T  22197777 tcacataatttagtgtaattacaagtgtcagtgtc 22197743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 22652000 - 22652049
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| | | ||||||||||||||  |||||||||||||||||||    
T  22652000 tcacataattcaatataattacaagtgtcggtgtcgtgtcggtgtcggac 22652049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 24362237 - 24362192
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtc 399  Q
    |||||||||| |||||||||| | |||||| |||||||||||||||    
T  24362237 tcacataattcagtgtaattatatgtgtcaatgtcgtgtcggtgtc 24362192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 25566865 - 25566910
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtc 399  Q
    |||||||||| ||||||||||||||||||  |||||||| ||||||    
T  25566865 tcacataattcagtgtaattacaagtgtcggtgtcgtgttggtgtc 25566910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 382
Target Start/End: Original strand, 8342996 - 8343024
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtc 382  Q
    |||||||||||||||||||||||||||||    
T  8342996 tcacataatttagtgtaattacaagtgtc 8343024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 382
Target Start/End: Original strand, 20873093 - 20873121
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtc 382  Q
    |||||||||||||||||||||||||||||    
T  20873093 tcacataatttagtgtaattacaagtgtc 20873121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 403
Target Start/End: Complemental strand, 24764847 - 24764811
Alignment:
Q  367 tgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  24764847 tgtaatcacatgtgtcactgtcgtgtcggtgtcggac 24764811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 24339666 - 24339715
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  24339666 tcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggac 24339715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 2334274 - 2334322
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  2334274 tcacataatttagtgtaattacaagtgtcggtgtcgtgtc-gtgtcggac 2334322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 9408369 - 9408324
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtc 399  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||    
T  9408369 tcacataatttagtgtaattacaagtgtcggtgtcgtatcggtgtc 9408324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 11272617 - 11272572
Alignment:
Q  358 ataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||| ||||||||||||||||||  |||||||||||||||||||    
T  11272617 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggac 11272572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 18039023 - 18039067
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgt 398  Q
    |||||||||| ||||||||||||||||||  ||||||||||||||    
T  18039023 tcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgt 18039067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 21560527 - 21560572
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtc 399  Q
    |||||||||| ||||||||||||||||||  |||||| ||||||||    
T  21560527 tcacataattcagtgtaattacaagtgtcggtgtcgtatcggtgtc 21560572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 26033496 - 26033451
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtc 399  Q
    |||||||||| ||||||||||||||||||  | |||||||||||||    
T  26033496 tcacataattcagtgtaattacaagtgtcggtctcgtgtcggtgtc 26033451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 16766721 - 16766770
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  16766721 tcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggac 16766770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 380
Target Start/End: Complemental strand, 17841686 - 17841598
Alignment:
Q  290 ctatgaagcactgatactgacagggcacactgatacaccgacacatctaataatttgnnnnnnntcacataatttagtgtaattacaagtg 380  Q
    ||||||||||||||||| |||| || ||||||| || |||||||| |||||||||||       |||||||||||||||||||||||||||    
T  17841686 ctatgaagcactgatacggacacgg-acactgacacgccgacacagctaataatttg-aaaaaatcacataatttagtgtaattacaagtg 17841598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 403
Target Start/End: Complemental strand, 21395341 - 21395294
Alignment:
Q  356 acataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||||||||||||||||||||  ||||||||| |||||||||    
T  21395341 acataatttagtgtaattacaagtgtcggtgtcgtgtcagtgtcggac 21395294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 9107405 - 9107356
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    ||||| |||| ||||||||||||||||||  |||||||||||||||||||    
T  9107405 tcacaaaattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggac 9107356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 402
Target Start/End: Original strand, 9522915 - 9522963
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcgga 402  Q
    |||||||||| ||||||||||||||||||  ||| ||||||||||||||    
T  9522915 tcacataattcagtgtaattacaagtgtcggtgttgtgtcggtgtcgga 9522963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 16111790 - 16111742
Alignment:
Q  356 acataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggacg 404  Q
    ||||||||||||||||||| | |||||| ||||||||||| ||||||||    
T  16111790 acataatttagtgtaattataggtgtcagtgtcgtgtcggagtcggacg 16111742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 12696350 - 12696389
Alignment:
Q  356 acataatttagtgtaattacaagtgtcactgtcgtgtcgg 395  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  12696350 acataattcagtgtaattacaagtgtcagtgtcgtgtcgg 12696389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 392
Target Start/End: Original strand, 31384944 - 31384982
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgt 392  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  31384944 tcacataattcagtgtaattacaagtgtcagtgtcgtgt 31384982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 5970143 - 5970094
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| ||||||||||||| |||   |||||||||||||||||||    
T  5970143 tcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtcggac 5970094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 8365554 - 8365505
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    ||||||||||  |||||||||||||||||  |||||||||||| ||||||    
T  8365554 tcacataattcggtgtaattacaagtgtcggtgtcgtgtcggtatcggac 8365505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 8714004 - 8714053
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| ||||||||||||| |||   |||||||||||||||||||    
T  8714004 tcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtcggac 8714053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 33340420 - 33340371
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    ||||||| |||| |||||||| |||||||| ||||||| |||||||||||    
T  33340420 tcacatattttactgtaattataagtgtcattgtcgtgccggtgtcggac 33340371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 35125678 - 35125727
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    ||||||| |||| |||||||| |||||||| ||||||| |||||||||||    
T  35125678 tcacatattttactgtaattataagtgtcattgtcgtgccggtgtcggac 35125727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 393
Target Start/End: Original strand, 17302543 - 17302620
Alignment:
Q  316 acactgatacaccgacacatctaataatttgnnnnnnntcacataatttagtgtaattacaagtgtcactgtcgtgtc 393  Q
    ||||||| || | |||||| |||||||||||       |||||||||| | ||||||||||||||||| |||||||||    
T  17302543 acactgacacgctgacacaactaataatttgaaaaaaatcacataattcaatgtaattacaagtgtcattgtcgtgtc 17302620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 20196 - 20239
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtg 397  Q
    |||||||||| ||||||||||||||||||| |||||||||||||    
T  20196 tcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtg 20239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 2952 - 2994
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggt 396  Q
    |||||||||||||||||||||||||| ||| ||||||||||||    
T  2952 tcacataatttagtgtaattacaagtatcagtgtcgtgtcggt 2994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 23535 - 23584
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| |||||||||| |||||||| |||||| ||||||||||||    
T  23535 tcacataattcagtgtaattataagtgtcagtgtcgtttcggtgtcggac 23584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 71749 - 71798
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    ||||| |||| ||||||||||| ||||||| |||||||||||||||||||    
T  71749 tcacacaattcagtgtaattactagtgtcagtgtcgtgtcggtgtcggac 71798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 4383391 - 4383436
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtc 399  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||||    
T  4383391 tcacataattcagtgtaattacaaatgtcagtgtcgtgtcggtgtc 4383436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 51701284 - 51701328
Alignment:
Q  356 acataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcg 400  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||    
T  51701284 acataattgagtgtaattacaagtgttagtgtcgtgtcggtgtcg 51701328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 3947798 - 3947760
Alignment:
Q  357 cataatttagtgtaattacaagtgtcactgtcgtgtcgg 395  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  3947798 cataattcagtgtaattacaagtgtcagtgtcgtgtcgg 3947760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 392
Target Start/End: Complemental strand, 27706212 - 27706174
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgt 392  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  27706212 tcacataatttagtgtaattacaagtgtgagtgtcgtgt 27706174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 382
Target Start/End: Complemental strand, 6485646 - 6485618
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtc 382  Q
    |||||||||||||||||||||||||||||    
T  6485646 tcacataatttagtgtaattacaagtgtc 6485618  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 30838238 - 30838286
Alignment:
Q  358 ataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggacgcg 406  Q
    ||||||||||||||||| |||| ||  ||||||||| ||||||||||||    
T  30838238 ataatttagtgtaattataagtatcggtgtcgtgtcagtgtcggacgcg 30838286  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 30717565 - 30717516
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| ||||||||||||||||||  |||||||||| ||||||||    
T  30717565 tcacataattcagtgtaattacaagtgtcgatgtcgtgtcgttgtcggac 30717516  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 399
Target Start/End: Complemental strand, 4882727 - 4882686
Alignment:
Q  358 ataatttagtgtaattacaagtgtcactgtcgtgtcggtgtc 399  Q
    |||||| ||||||||||||||||||  |||||||||||||||    
T  4882727 ataattcagtgtaattacaagtgtcgatgtcgtgtcggtgtc 4882686  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 34785017 - 34784968
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    ||||||||||||||||||||| | |||||  |||||||||||| ||||||    
T  34785017 tcacataatttagtgtaattatatgtgtcggtgtcgtgtcggtatcggac 34784968  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 37419767 - 37419816
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    ||||| |||| |||||||||||||||| |  |||||||||||||||||||    
T  37419767 tcacaaaattcagtgtaattacaagtgccggtgtcgtgtcggtgtcggac 37419816  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 15657888 - 15657940
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggacgcg 406  Q
    |||||||||| ||||||||||||| ||||  |||||||| | |||||||||||    
T  15657888 tcacataattcagtgtaattacaaatgtcggtgtcgtgttgatgtcggacgcg 15657940  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 23058477 - 23058433
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgt 398  Q
    |||||||||  ||||||||||||||||||  ||||||||||||||    
T  23058477 tcacataatccagtgtaattacaagtgtcggtgtcgtgtcggtgt 23058433  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 33153448 - 33153488
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcg 394  Q
    |||||||||| ||||||||||||||||||  ||||||||||    
T  33153448 tcacataattcagtgtaattacaagtgtccgtgtcgtgtcg 33153488  T

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Target: scaffold0008 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 263406 - 263362
Alignment:
Q  355 cacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtc 399  Q
    ||||||||| |||||||||| |||||||| |||||||||||||||    
T  263406 cacataattcagtgtaattataagtgtcagtgtcgtgtcggtgtc 263362  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 24052 - 24097
Alignment:
Q  357 cataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||    
T  24052 cataatttagtgtaattac-agtttcagtgtcgtgtcggtgtcggac 24097  T

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Target: scaffold0044 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 53204 - 53253
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||| |||||||||| |||||||  || ||||||||||||||||    
T  53204 tcacataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggac 53253  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 241618 - 241667
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtcactgtcgtgtcggtgtcggac 403  Q
    |||||||||||||||||||||  ||||||  |||||||| ||||||||||    
T  241618 tcacataatttagtgtaattatgagtgtcggtgtcgtgttggtgtcggac 241667  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 382
Target Start/End: Complemental strand, 17784 - 17756
Alignment:
Q  354 tcacataatttagtgtaattacaagtgtc 382  Q
    |||||||||||||||||||||||||||||    
T  17784 tcacataatttagtgtaattacaagtgtc 17756  T

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