View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_48 (Length: 507)
Name: NF1137_low_48
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 48407986 - 48407807
Alignment:
| Q |
1 |
cctagctgaattaaaagtagcagattgtatgattcatgagtataaagcttggaatgtcccattcattagttcgatttttatcatgaaactgcctccagta |
100 |
Q |
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| T |
48407986 |
cctagctgaattaaaagtagcagattgtatgattcatgagtataaagcttggaatgtcccattcattagttcgatttttatcatgaaactgcctccagtg |
48407887 |
T |
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| Q |
101 |
tagacataatgaatacgtctatgtatcattctgtgatcgaggacaatcttgtgtggacgaaagaaaataatggtgagtactcgg |
184 |
Q |
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| T |
48407886 |
taaacataatgaatatgtctatgtatcattctgtgaccgaggacaatct----tggacgaaagaaaataatggtgagtactcgg |
48407807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 358 - 478
Target Start/End: Complemental strand, 48403940 - 48403820
Alignment:
| Q |
358 |
tggaattgtgctctttgtgattccaatgatgaggatagcttaaacttattttttaaatgccccaatagttgtaatatatggagtatgtgcagctttcact |
457 |
Q |
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| T |
48403940 |
tggaattgtgctctttgtgattccaatgatgaggatagcttaaatttattttttaaatgccccaatagttgtaatatatggagtatgtgcagctttcact |
48403841 |
T |
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| Q |
458 |
cagctattgataacaccatta |
478 |
Q |
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| T |
48403840 |
cagctattgataacaccatta |
48403820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 35321558 - 35321610
Alignment:
| Q |
259 |
cttaaagttccaccaaaggtcacaaactttatatggcgggtttgtagaaattg |
311 |
Q |
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| T |
35321558 |
cttaaactcccaccaaaggttaagaacttcatatggcgggtttgtagaaattg |
35321610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 5634114 - 5634204
Alignment:
| Q |
148 |
cttgtgtggacgaaagaaaataatggtgagtactcggtttgtagtgcttataagttgtgtatgcaggatttgcttgatataaatcatttta |
238 |
Q |
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| T |
5634114 |
cttgtttggacgaaggaaaataatggtgagtattctgttagaagtgcatataaaatgtgtatgcaagaattacttgatgtcaatcatttta |
5634204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 11568571 - 11568481
Alignment:
| Q |
148 |
cttgtgtggacgaaagaaaataatggtgagtactcggtttgtagtgcttataagttgtgtatgcaggatttgcttgatataaatcatttta |
238 |
Q |
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| T |
11568571 |
cttgtttggacgaaggaaaataatggtgagtattctgttagaagtgcatataaaatgtgtatgcaagaattacttgatgtcaatcatttta |
11568481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 19111361 - 19111271
Alignment:
| Q |
148 |
cttgtgtggacgaaagaaaataatggtgagtactcggtttgtagtgcttataagttgtgtatgcaggatttgcttgatataaatcatttta |
238 |
Q |
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| T |
19111361 |
cttgtttggacgaaggaaaataatggtgagtattctgttagaagtgcatataaaatgtgtatgcaagaattacttgatgtcaatcatttta |
19111271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 33305885 - 33305833
Alignment:
| Q |
259 |
cttaaagttccaccaaaggtcacaaactttatatggcgggtttgtagaaattg |
311 |
Q |
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| T |
33305885 |
cttaaactcccaccaaaggttaagaacttcatatggcgggtttgtagaaattg |
33305833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 31636809 - 31636861
Alignment:
| Q |
259 |
cttaaagttccaccaaaggtcacaaactttatatggcgggtttgtagaaattg |
311 |
Q |
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| T |
31636809 |
cttaaactcccaccaaaggttaagaacttcatatggcgggtttgtagaaattg |
31636861 |
T |
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