View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_51 (Length: 496)
Name: NF1137_low_51
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 30 - 488
Target Start/End: Original strand, 47122348 - 47122823
Alignment:
| Q |
30 |
cattttatcaaagatatcattatagtcattaccatgttggtttgatctctacttttacataatttggt-----------------taaattagttttggg |
112 |
Q |
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| T |
47122348 |
cattttatcaaagatatcattatagtcattaccatgttggtttgatctctacttttacataatttggtacttttttaaataagattaaattagttttggg |
47122447 |
T |
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| Q |
113 |
ttc-tacaaatatagtgaattttgtttttagtctttgtatccactttgtagtccatacaaatnnnnnnntacatttttaagtccctaaacaagtgattaa |
211 |
Q |
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| T |
47122448 |
ttcctacaaatatagtgaattttgtttttaatctttgtatccattttgtagtccatacaa-tacaaaaatacatttttaagtccttaaacgagtgactaa |
47122546 |
T |
|
| Q |
212 |
aagtatattatttgtattctgtagtgtccatatacttctctgactcaaatatcatcctccggataaatttatataatcctttaacaaattgttttatctc |
311 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47122547 |
aagtatattatttgtattatgtagtgtccatatacttctctgactccaatgtcatcctccggataaatttatataatcctttaacaaattgttttatctc |
47122646 |
T |
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| Q |
312 |
aaataaaattattttcttataaaaacttaaaaatccacatcaaattgaaaattaccttgcaagcctaagtacttataatcaaaatggtcaagaaatgata |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47122647 |
aaataaaattattttcttataaaaacttaaaaatccacatcaaattgaaaattaccttgcaagcctaagtacttataatcaaaatggtcaagaaatgata |
47122746 |
T |
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| Q |
412 |
ttcacacattcatataagagacgcttttgctacaagctacatttgctaatttatctttaaaatacatgtttcatctc |
488 |
Q |
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| T |
47122747 |
ttcacacattcatataagagacgcttttgctacaagctacatttgctaatttatctttaatatacatgtttcatctc |
47122823 |
T |
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