View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_52 (Length: 495)
Name: NF1137_low_52
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 129 - 486
Target Start/End: Complemental strand, 41495645 - 41495288
Alignment:
| Q |
129 |
tcaatcatcttttgatacaattcaattggggcatccaatgctacttatttcccaatttatttagtagtcaattgcaaaaatacttatatttaatttcaat |
228 |
Q |
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| T |
41495645 |
tcaatcatcttttgatacaattcaattggggcatccaatgctacttacttcccaatttatttagtagtcaattgcaaaaatacttatatttaatttcaat |
41495546 |
T |
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| Q |
229 |
tctacattattgtcaagaacaataatgttatatatattgtgtggattatactacaaatttatttttagttaaactcaaaagcttcatcaaatgatgaaaa |
328 |
Q |
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| T |
41495545 |
tctacattattgtcaagaacaataatgttatatatattgtgtggattatactacaaatttatttttagttaaactcaaaagcttcatcaaatgatgaaaa |
41495446 |
T |
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| Q |
329 |
taatgcaaaagaaaatataaacaacgttaacgtttctgtttatgtggataagatataaagtttttacccaaacatggttaaatagtcatcaaagattcaa |
428 |
Q |
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| T |
41495445 |
taatgcaaaagaaaatataaacaacgttaacgtttctgtttatgtggataagatataaagtttttacccaaacatggttaaatagtcatcaaagattcaa |
41495346 |
T |
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| Q |
429 |
ccaaaagagaaaaaacaagagaaagggaaaattgtttggttgtggagtggagtataat |
486 |
Q |
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| T |
41495345 |
ccaaaagagaaaaaacaagagaaagggaaaattgtttggttgtggagtggagtataat |
41495288 |
T |
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