View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1137_low_53 (Length: 486)
Name: NF1137_low_53
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 176 - 474
Target Start/End: Complemental strand, 8761816 - 8761518
Alignment:
| Q |
176 |
tgaaattagtcctagctagtttctagcttgggattttatttttacaaataaacatatttaattgtcaatattttgttaattattctagtcataggtgcag |
275 |
Q |
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| T |
8761816 |
tgaaattagtcctagctagtttctagcttgggattttatttttacaaataaacatatttaattgtcaatattttgctaattattctagtcataggtgcag |
8761717 |
T |
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| Q |
276 |
ccaaagaattttttatttataatttttccacgaaaattggcctgcgacttacagcctgactcttgccaccatcagcatgctgcatacgaatattattcgt |
375 |
Q |
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| T |
8761716 |
ccaaagaattttttatttataatttttccacgaaaattggcctgcgacttacagcctgactcttgccaccatcagcatgctgcatacgaatattattcgt |
8761617 |
T |
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| Q |
376 |
ttatagtcctcttaatttatgagattattacgtatattagaaattcaaattggtccctaataatttggataagagtttctttttgttttggttaaccta |
474 |
Q |
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| T |
8761616 |
ttatagtcctcttaatttatgagactattacgtatattagaaattcaaattggtccctaataatttggataagagtttctttttgttttggttaaccta |
8761518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 8761889 - 8761813
Alignment:
| Q |
65 |
ttatagttttcaaaaaccatttctattattgtcttctatttttcgatgggatgaatatggtcaaacacgaacatgaa |
141 |
Q |
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| T |
8761889 |
ttatagttttcaaaaaccatttctattattgtcttctatttttcgatgggatgaatatggtcaaacacgaacatgaa |
8761813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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