View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1137_low_55 (Length: 477)
Name: NF1137_low_55
Description: NF1137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1137_low_55 |
 | |
|
| [»] scaffold0224 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0642 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0224 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 31 - 467
Target Start/End: Original strand, 23215 - 23650
Alignment:
| Q |
31 |
atgtcagttagtaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaagattttgctacaaacattat |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23215 |
atgtcagttagtaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaagattttcctacaaacattat |
23314 |
T |
|
| Q |
131 |
agccaaccctaaaatgaagtataaattatacttagacacaaacagagtgcaaaagataaattagacaaagatccatttaaactaatgtgctgaataatta |
230 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23315 |
agccaacc-taaaatgaagtataaattatacttggacgcaaacagagtgcacaagataaattagacaaagatccatttaaacttatgtgctgaataatta |
23413 |
T |
|
| Q |
231 |
tgaagcaagatatcaaaatcaaattagataaaactgtgagtggtgaatttctcatcatgatagacaaatgaacttctccctacaaagcatcacacacatt |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23414 |
tgaagcaagatatcaaaatcaaattagataaaactatgagtggtgaatttctcatcttgatagacaaatgaacctctccctacaaagcatcacacacatt |
23513 |
T |
|
| Q |
331 |
tcattttgtcatttccaacattacaaataatagttgtatctaaaattggcagcagaataaagcattacaaataatagttgtatctcaaattcacagagaa |
430 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23514 |
tcattttgtcattgccagcattacaaataatagttgtatctaaaattgccagcagaataaaatattacaaataatagttgtatctcaaattcatagagaa |
23613 |
T |
|
| Q |
431 |
tgatatgataccatacgataagagcatctaagaatta |
467 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
23614 |
tgatatgataccatacaataagcacatctaagaatta |
23650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 31 - 467
Target Start/End: Original strand, 42836134 - 42836569
Alignment:
| Q |
31 |
atgtcagttagtaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaagattttgctacaaacattat |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42836134 |
atgtcagttagtaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaagattttcctacaaacattat |
42836233 |
T |
|
| Q |
131 |
agccaaccctaaaatgaagtataaattatacttagacacaaacagagtgcaaaagataaattagacaaagatccatttaaactaatgtgctgaataatta |
230 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42836234 |
agccaacc-taaaatgaagtataaattatacttggacgcaaacagagtgcacaagataaattagacaaagatccatttaaacttatgtgctgaataatta |
42836332 |
T |
|
| Q |
231 |
tgaagcaagatatcaaaatcaaattagataaaactgtgagtggtgaatttctcatcatgatagacaaatgaacttctccctacaaagcatcacacacatt |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42836333 |
tgaagcaagatatcaaaatcaaattagataaaactatgagtggtgaatttctcatcttgatagacaaatgaacctctccctacaaagcatcacacacatt |
42836432 |
T |
|
| Q |
331 |
tcattttgtcatttccaacattacaaataatagttgtatctaaaattggcagcagaataaagcattacaaataatagttgtatctcaaattcacagagaa |
430 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42836433 |
tcattttgtcattgccagcattacaaataatagttgtatctaaaattgccagcagaataaaatattacaaataatagttgtatctcaaattcatagagaa |
42836532 |
T |
|
| Q |
431 |
tgatatgataccatacgataagagcatctaagaatta |
467 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
42836533 |
tgatatgataccatacaataagcacatctaagaatta |
42836569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 461
Target Start/End: Original strand, 35241507 - 35241555
Alignment:
| Q |
413 |
tctcaaattcacagagaatgatatgataccatacgataagagcatctaa |
461 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
35241507 |
tctcaaatgcacacagaatgatatgataccatacgataagcacatctaa |
35241555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 29 - 284
Target Start/End: Original strand, 42715322 - 42715576
Alignment:
| Q |
29 |
aaatgtcagttagtaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaagattttgctacaaacatt |
128 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42715322 |
aaatgtcagttagtaaactaacctctgtttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaagattttcctacaaacatt |
42715421 |
T |
|
| Q |
129 |
atagccaaccctaaaatgaagtataaattatacttagacacaaacagagtgcaaaagataaattagacaaagatccatttaaactaatgtgctgaataat |
228 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42715422 |
atagccaacc-taaaacgaagtataaattatacttggacacaaacagagtgcaaaagataaattagacaaagatccatttaaattaatgtgctgaataat |
42715520 |
T |
|
| Q |
229 |
tatgaagcaagatatcaaaatcaaattagataaaactgtgagtggtgaatttctca |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42715521 |
tatgaagcaagatatcaaaatcaaattagataaaagtgtgagtggtgaatttctca |
42715576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 3380119 - 3379977
Alignment:
| Q |
43 |
aaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaagattttgctac-aaacattatagccaacccta |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| |||| |
|
|
| T |
3380119 |
aaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaattttttcctacaaaacattatagccaa-ccta |
3380021 |
T |
|
| Q |
142 |
aaatgaagtataaattatacttagacacaaacagagtgcaaaag |
185 |
Q |
| |
|
||| ||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
3380020 |
aaaggaatgataaattgtacttagacacaaacagagtacaaaag |
3379977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 38994770 - 38994814
Alignment:
| Q |
154 |
aattatacttagacacaaacagagtgcaaaagataaattagacaa |
198 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
38994770 |
aattatatttagacacaaaaagagcgcaaaagataaattacacaa |
38994814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 34 - 394
Target Start/End: Original strand, 36931033 - 36931391
Alignment:
| Q |
34 |
tcagttagtaaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaagattttgctacaaacattatagc |
133 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
36931033 |
tcagtcagtaaactaacctctctttttcaaatctttctctgaaatactcaagtctcaatcactaaataaaaaccaatttttttcctataaacattatagc |
36931132 |
T |
|
| Q |
134 |
caaccctaaaatgaagtataaattatacttagacacaaacagagtgcaaaagataaattagacaaagatccatttaaactaatgtgctgaataattatga |
233 |
Q |
| |
|
| ||| ||||| |||| | ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||| ||| ||||||| || || ||||||| |
|
|
| T |
36931133 |
ccacc-taaaaggaaggaaaaattgtacttagatacaaagagagtacaaaagataaattagacaaagatccatt-aaattaatgtgatggatgattatga |
36931230 |
T |
|
| Q |
234 |
agcaagatatcaaaatcaaattagataaaactgtgagtggtgaatttctcatcatgatagacaaatgaacttctccctacaaagcatcacacacatttca |
333 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||| ||| |||||||| ||| |
|
|
| T |
36931231 |
agcaagatatcaaaaacaaattagataaaactgtgagtgatgaatttctcatcatgatagagaaatgaacttccctctacacagcgtcacacacgtttat |
36931330 |
T |
|
| Q |
334 |
ttttgtcatttccaacattacaaataatagttgtatctaaaattggcagcagaataaagca |
394 |
Q |
| |
|
|||||| ||| | | ||||| ||| |||||||||||||| |||||| |||||||||||||| |
|
|
| T |
36931331 |
ttttgttattgctagcattaaaaagaatagttgtatctagaattggtagcagaataaagca |
36931391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 52057 - 52199
Alignment:
| Q |
43 |
aaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaagattttgctac-aaacattatagccaacccta |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| |||| |
|
|
| T |
52057 |
aaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaattttttcctacaaaacattatagccaa-ccta |
52155 |
T |
|
| Q |
142 |
aaatgaagtataaattatacttagacacaaacagagtgcaaaag |
185 |
Q |
| |
|
||| ||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
52156 |
aaaggaatgataaattgtacttagacacaaacagagtacaaaag |
52199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 5899 - 5757
Alignment:
| Q |
43 |
aaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaagattttgctac-aaacattatagccaacccta |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||| |||| |
|
|
| T |
5899 |
aaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaattttttcctacaaaacaatatagccaa-ccta |
5801 |
T |
|
| Q |
142 |
aaatgaagtataaattatacttagacacaaacagagtgcaaaag |
185 |
Q |
| |
|
||| ||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
5800 |
aaaggaatgataaattgtacttagacacaaacagagtacaaaag |
5757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 15811 - 15669
Alignment:
| Q |
43 |
aaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaagattttgctac-aaacattatagccaacccta |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||| |||| |
|
|
| T |
15811 |
aaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaattttttcctacaaaacaatatagccaa-ccta |
15713 |
T |
|
| Q |
142 |
aaatgaagtataaattatacttagacacaaacagagtgcaaaag |
185 |
Q |
| |
|
||| ||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
15712 |
aaaggaatgataaattgtacttagacacaaacagagtacaaaag |
15669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 23170 - 23312
Alignment:
| Q |
43 |
aaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaagattttgctac-aaacattatagccaacccta |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||| |||| |
|
|
| T |
23170 |
aaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaattttttcctacaaaacaatatagccaa-ccta |
23268 |
T |
|
| Q |
142 |
aaatgaagtataaattatacttagacacaaacagagtgcaaaag |
185 |
Q |
| |
|
||| ||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
23269 |
aaaggaatgataaattgtacttagacacaaacagagtacaaaag |
23312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 44497386 - 44497244
Alignment:
| Q |
43 |
aaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatcactaaataaaaaccaaagattttgctac-aaacattatagccaacccta |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||||||| |||| |
|
|
| T |
44497386 |
aaactaacctctctttttcaaatctttctccaaaatactcaagtgtcaatctttaaataaaaaccaaattttttcctacaaaacattatagccaa-ccta |
44497288 |
T |
|
| Q |
142 |
aaatgaagtataaattatacttagacacaaacagagtgcaaaag |
185 |
Q |
| |
|
||| ||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
44497287 |
aaaggaatgataaattgtacttagacacaaacagagtacaaaag |
44497244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 467
Target Start/End: Complemental strand, 31231220 - 31231166
Alignment:
| Q |
413 |
tctcaaattcacagagaatgatatgataccatacgataagagcatctaagaatta |
467 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| |||||| ||||||| ||||| |
|
|
| T |
31231220 |
tctcaaattcacacagaatgatataataccatatgataagcacatctaataatta |
31231166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 14702131 - 14702082
Alignment:
| Q |
418 |
aattcacagagaatgatatgataccatacgataagagcatctaagaatta |
467 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||| ||||||||||||| |
|
|
| T |
14702131 |
aattcacaaagaatgatctgataccatatgataagcacatctaagaatta |
14702082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 46231073 - 46231122
Alignment:
| Q |
418 |
aattcacagagaatgatatgataccatacgataagagcatctaagaatta |
467 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||| ||||||||||||| |
|
|
| T |
46231073 |
aattcacaaagaatgatctgataccatatgataagcacatctaagaatta |
46231122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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